ViewGene

Locus Name:
GeneID:
Location:

GeneID:1779
TrivialName: PA14_12070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12070
PAO1 Ortholog Locus:PA4002
Sequence Length:1104
Protein Length:367
Start: 1042886
Stop: 1043989
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07389.1|AE004817_13 (AE004817) rod shape-determining protein [Pseudomonas aeruginosa PAO1]
Identities = 367/367 (100%), Positives = 367/367 (100%)
Sequence:
ATGCGCCGGCGCGCCAGCCTGTTGCAGCGCCTGCACATCGACGGGATTCTCCTGCTGCTGTTGCTGATCCTT
GGCGCCACCGGCCTGTTCGTCCTCTATTCGGCGAGCGGCAAGAGCTGGGACATGCTGATGAAGCAGGCCACC
TCGTTCGGCCTGGGACTGGGCATGATGGTGGTCATCGCCCAGATCGAGCCGCGCTTCATGGCCCGCTGGGTG
CCGCTGGGCTACCTGGTGGGGGTCGCGCTGCTGGTGGTGGTCGACGTGATCGGCCACGACGCCAAGGGGGCG
ACGCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGCTGCTGATGCCGATG
ACGGTGGCCTGGTACCTGTCCAAGCGCAACCTGCCGCCGGGGCTCAAGCACATGGTGATCAGCCTGGCGATC
ATCATCACCCCGTTCGTGCTGATCCTGAAACAGCCCGACCTCGGCACCGCCATGCTGATCCTCGCTTCCGGC
GGCTTCGTGCTGTTCGTCGGCGGCCTGCGCTGGCGCTGGATCGTCGGCGCGGTGTCGGCGGCGGTGCCGATC
GCAGTGGCGATGTGGTTCTTCATCATGCACGACTACCAGAAACAGCGGGTGCTGACCTTCCTCGACCCGGAA
AGCGACCCGCTGGGCACCGGCTGGAACATCATCCAGTCTAAGGCGGCCATCGGTTCCGGCGGGGTATTCGGC
AAGGGCTGGCTGCTGGGCACCCAGTCGCACCTGGATTTTTTGCCGGAAAGCCACACCGACTTTATCATTGCG
GTCCTCGGCGAGGAGTTCGGCCTGGTCGGCGTCTGCCTGCTGCTGGTGCTCTACCTGCTGCTGATCAGTCGT
GGCCTGGTGATCACCGCCCAGGCGCAGACGCTCTACGGCAAACTGCTGGCCGGTGGCATCACCATGACGTTT
TTCGTTTATGTCTTCGTGAATATCGGTATGGTGAGCGGGTTGTTGCCGGTGGTGGGGGTACCGCTGCCTTTC
ATTAGTTATGGCGGAACTTCGCTGGTTACCCTGTTGTCAGGGTTCGGGGTTCTGATGTCGATCCATACCCAT
CGGAAGTGGATCGCCCAGGTTTGA
Translation:
MRRRASLLQRLHIDGILLLLLLILGATGLFVLYSASGKSWDMLMKQATSFGLGLGMMVVIAQIEPRFMARWV
PLGYLVGVALLVVVDVIGHDAKGATRWINIPGVIRFQPSEFMKLLMPMTVAWYLSKRNLPPGLKHMVISLAI
IITPFVLILKQPDLGTAMLILASGGFVLFVGGLRWRWIVGAVSAAVPIAVAMWFFIMHDYQKQRVLTFLDPE
SDPLGTGWNIIQSKAAIGSGGVFGKGWLLGTQSHLDFLPESHTDFIIAVLGEEFGLVGVCLLLVLYLLLISR
GLVITAQAQTLYGKLLAGGITMTFFVYVFVNIGMVSGLLPVVGVPLPFISYGGTSLVTLLSGFGVLMSIHTH
RKWIAQV*
AnnotationID:1788GeneID:1779
AnnotatorUID: urbach
Modification Date/Time: 2004-09-13 16:04:53
Gene Name:rodA
Confidence Code:2
GeneProduct:rod shape-determining protein
Cell Localization:(4) Inner membrane protein
Synonyms:mrdB
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0772,pfam01098
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Cell Wall Biosynthesis
Homology:
gb|AAG07389.1|AE004817_13 (AE004817) rod shape-determining protein
[Pseudomonas aeruginosa PAO1]
Length = 367
Score =  726 bits (1874), Expect = 0.0
Identities = 367/367 (100%), Positives = 367/367 (100%)
Structural Features:
gnl|CDD|10640 COG0772, FtsW, Bacterial cell division membrane protein
[Cell division and chromosome partitioning]
Length = 381
Score =  297 bits (761), Expect = 4e-81
Identities = 173/362 (47%), Positives = 239/362 (66%), Gaps = 14/362 (3%)
Genomic Context:
Comment:
ReferenceID:3561
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20708
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34285
Author/Investigator(s): Asoh S, Matsuzawa H, Matsuhashi M, Ohta T.
Title: Molecular cloning and characterization of the genes (pbpA and rodA) responsible for the rod shape of Escherichia coli K-12: analysis of gene expression with transposon Tn5 mutagenesis and protein synthesis directed by constructed plasmids.
PubMed: 6300030
MedLine:
Source:
J Bacteriol. 1983 Apr;154(1):10-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6300030
ReferenceID:34286
Author/Investigator(s): Stoker NG, Pratt JM, Spratt BG.
Title: Identification of the rodA gene product of Escherichia coli.
PubMed: 6348029
MedLine:
Source:
J Bacteriol. 1983 Aug;155(2):854-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6348029
Homologs By Global Alignment
Gene ID:1779

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3143 PA4002_tr translation of PA4002 367 99.99 99.99 0 1874.0
97717 gb|AAG07389.1|AE004817_13 (AE004817) rod shape-determining protein [Pseudomonas aeruginosa PAO1] 367 99.99 99.99 0 1874.0
97718 gb|AAD32231.1|AF147448_2 (AF147448) rod-shape-determining protein [Pseudomonas aeruginosa] 367 99.99 99.99 0 1874.0
97719 gb|AAN70375.1|AE016679_7 (AE016792) rod-shape-determining protein RodA [Pseudomonas putida KT2440] 374 83.15 91.17 7 1650.0
97720 gb|AAO58253.1| (AE016873) rod-shape-determining protein RodA [Pseudomonas syringae pv. tomato str. DC3000] 381 79.79 89.23 14 1619.0
GC ORFID: 44781How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4002Glimmer Score:
Start: 3911052Stop: 3909949
Length: 1104
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4002 translation of PA4002Homolog Bit Score 726.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5327 (ORF: BLASTX 649.0), t_PA4002 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCGGCGCGCCAGCCTGTTGCAGCGCCTGCACATCGACGGGATTCTCCTGCTGCTGTTGCTGATCCTT
GGCGCCACCGGCCTGTTCGTCCTCTATTCGGCGAGCGGCAAGAGCTGGGACATGCTGATGAAGCAGGCCACC
TCGTTCGGCCTGGGACTGGGCATGATGGTGGTCATCGCCCAGATCGAGCCGCGCTTCATGGCCCGCTGGGTG
CCGCTGGGCTACCTGGTGGGGGTCGCGCTGCTGGTGGTGGTCGACGTGATCGGCCACGACGCCAAGGGGGCG
ACGCGCTGGATCAACATCCCCGGGGTGATCCGCTTCCAGCCCTCGGAGTTCATGAAGCTGCTGATGCCGATG
ACGGTGGCCTGGTACCTGTCCAAGCGCAACCTGCCGCCGGGGCTCAAGCACATGGTGATCAGCCTGGCGATC
ATCATCACCCCGTTCGTGCTGATCCTGAAACAGCCCGACCTCGGCACCGCCATGCTGATCCTCGCTTCCGGC
GGCTTCGTGCTGTTCGTCGGCGGCCTGCGCTGGCGCTGGATCGTCGGCGCGGTGTCGGCGGCGGTGCCGATC
GCAGTGGCGATGTGGTTCTTCATCATGCACGACTACCAGAAACAGCGGGTGCTGACCTTCCTCGACCCGGAA
AGCGACCCGCTGGGCACCGGCTGGAACATCATCCAGTCTAAGGCGGCCATCGGTTCCGGCGGGGTATTCGGC
AAGGGCTGGCTGCTGGGCACCCAGTCGCACCTGGATTTTTTGCCGGAAAGCCACACCGACTTTATCATTGCG
GTCCTCGGCGAGGAGTTCGGCCTGGTCGGCGTCTGCCTGCTGCTGGTGCTCTACCTGCTGCTGATCAGTCGT
GGCCTGGTGATCACCGCCCAGGCGCAGACGCTCTACGGCAAACTGCTGGCCGGTGGCATCACCATGACGTTT
TTCGTTTATGTCTTCGTGAATATCGGTATGGTGAGCGGGTTGTTGCCGGTGGTGGGGGTACCGCTGCCTTTC
ATTAGTTATGGCGGAACTTCGCTGGTTACCCTGTTGTCAGGGTTCGGGGTTCTGATGTCGATCCATACCCAT
CGGAAGTGGATCGCCCAGGTTTGA