ViewGene
Locus Name:
GeneID:
Location:

GeneID:1778
TrivialName: PA14_15270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15270
PAO1 Ortholog Locus:PA3773
Sequence Length:1158
Protein Length:385
Start: 1295408
Stop: 1294251
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07160.1|AE004796_5 (AE004796) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 379/385 (98%), Positives = 382/385 (99%)
Sequence:
ATGAACGCTTCCGACAAGACCCTCGCCAGCGCCTCTCCGGCGTCCGGCAACCTCGCGCTGCTCGCGGCCATC
GTGGTGTTCGCCGCGATCACCCCGACCATCCTGATGACCGCCCCCGCCGTCGCCGCGCAACTGGCGGCCCAG
TGGCAACTGAGCCCGGCGCGGGTCGGCGACCTGTTCTCGGTGGAGCTGGGCGCCATGAGCCTGGCGACGCTG
CCGGCCTTCCATTGGCTGAAACGCGTCGATTGGCGCCACGCGGCGCTGCTCGCCGGCCTGCTGTTCATCGCC
GCCAACCTGGCCTCGGCGTTGGCCGGCAGCTACCCGCTGCTGCTCGCCCTGCGTTTCTGCAGCGCCCTCGCC
GGCGGCTCGCTGATGATCCTCTGCCTGTCCAGCGCCGCCAGCACCGCCACCCCGAGCCGGGTCTACGGGCTC
TGGGTGATGGGCCAACTGGTGGTCGGCGCCGTCGGCCTGGCACTGCTGCCGGCGCTGTTCGAACGCTTCGGC
CTGGCCGCCTGCTACCTGTTGCTGGCCGGCCTGATGGGCCTCGCCCTGCCGTTGTCGCGGGCCTTCCCCAGT
GGTAGCCCGCCAGCGGAAGCCCGCGCCAGTACCGGCGCGATTCACTCGCGACTGCGGGTCGGGCTGGGCATC
CTCGCCGTGCTCACCTTCTATATCAGCCTCAGCGGCATCTGGACCTTCATCGGCGCCATCGCCGAAGGCGCG
GGGATCGGTGCCGGCGCCAGCGGCGAGGTACTCGCCGTCGCCACCCTGATGGGCATCGCCGGGGCGGCCTGC
GCCTCCTTCATCGGCAACCGCCTGCCGCGCGACCTGATGCTGCTCGGCGGCTACCTGGCGATGGCCGCGGCG
ATCCTCCTGCTGATCGGCCAGCCACCGCTGGCGCGCTTCGCCCTGGCCGCGCTGCTGTTCAAGTTCACCTGG
ACCTTCGCCCTGCCGTTCATCCTCGCCTGCCTCGCCGATCTGGACCGCTCCGGCCGCCTGATGAACGCCTCC
AACCTGGTCATCGGCGGCGGGCTGGCCATCGGCCCGGCGCTGGCCGGACGACTCATCGAAAGCAGCGGCGGT
TTCCTCCCGCTGCTGCCGATCGCCGCCGGCCTGGCCGGCCTCTCGCTGCTACTGGCCCTGGCCTGCCGGCCA
CGCTGA
Translation:
MNASDKTLASASPASGNLALLAAIVVFAAITPTILMTAPAVAAQLAAQWQLSPARVGDLFSVELGAMSLATL
PAFHWLKRVDWRHAALLAGLLFIAANLASALAGSYPLLLALRFCSALAGGSLMILCLSSAASTATPSRVYGL
WVMGQLVVGAVGLALLPALFERFGLAACYLLLAGLMGLALPLSRAFPSGSPPAEARASTGAIHSRLRVGLGI
LAVLTFYISLSGIWTFIGAIAEGAGIGAGASGEVLAVATLMGIAGAACASFIGNRLPRDLMLLGGYLAMAAA
ILLLIGQPPLARFALAALLFKFTWTFALPFILACLADLDRSGRLMNASNLVIGGGLAIGPALAGRLIESSGG
FLPLLPIAAGLAGLSLLLALACRPR*
AnnotationID:1787GeneID:1778
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 17:05:27
Gene Name:
Confidence Code:3
GeneProduct:putative permease
Cell Localization:()
Synonyms:PA3773
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2814
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB53809.1| (AP003013) probable MFS transporter [Mesorhizobium loti]
          Length = 353

 Score = 92.4 bits (228), Expect = 4e-18
 Identities = 92/334 (27%), Positives = 159/334 (47%), Gaps = 16/334 (4%)

>gb|AAM39074.1| (AE012076) transmembrane protein [Xanthomonas axonopodis pv. citri
           str. 306]
          Length = 368

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 92/339 (27%), Positives = 149/339 (43%), Gaps = 29/339 (8%)






 
Structural Features:
COG2814, AraJ, Arabinose efflux permease 
[Carbohydrate transport and metabolism]
CD-Length = 394 residues,  97.5% aligned
Score = 61.4 bits (149), Expect = 4e-10
Identities = 97/387 (25%), Positives = 149/387 (38%), Gaps = 13/387 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20706




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31782




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1778_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1778
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3142
                           PA3773_tr
                           translation of PA3773
                           385
                           98.44
                           99.22
                           0
                           1873.0
     

     
     
97716
                           gb|AAG07160.1|AE004796_5
                           (AE004796) hypothetical protein PA3773 [Pseudomonas aeruginosa PAO1]
                           385
                           98.44
                           99.22
                           0
                           1873.0
     

     






      

          
GC ORFID: 44780How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3773Glimmer Score: 

          
Start: 3658529Stop: 3659686

          
Length: 1158


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3773 translation of PA3773Homolog Bit Score 726.0

          
Other Homologs:  t_PA3773 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGCTTCCGACAAGACCCTCGCCAGCGCCTCTCCGGCGTCCGGCAACCTCGCGCTGCTCGCGGCCATC 
GTGGTGTTCGCCGCGATCACCCCGACCATCCTGATGACCGCCCCCGCCGTCGCCGCGCAACTGGCGGCCCAG 
TGGCAACTGAGCCCGGCGCGGGTCGGCGACCTGTTCTCGGTGGAGCTGGGCGCCATGAGCCTGGCGACGCTG 
CCGGCCTTCCATTGGCTGAAACGCGTCGATTGGCGCCACGCGGCGCTGCTCGCCGGCCTGCTGTTCATCGCC 
GCCAACCTGGCCTCGGCGTTGGCCGGCAGCTACCCGCTGCTGCTCGCCCTGCGTTTCTGCAGCGCCCTCGCC 
GGCGGCTCGCTGATGATCCTCTGCCTGTCCAGCGCCGCCAGCACCGCCACCCCGAGCCGGGTCTACGGGCTC 
TGGGTGATGGGCCAACTGGTGGTCGGCGCCGTCGGCCTGGCACTGCTGCCGGCGCTGTTCGAACGCTTCGGC 
CTGGCCGCCTGCTACCTGTTGCTGGCCGGCCTGATGGGCCTCGCCCTGCCGTTGTCGCGGGCCTTCCCCAGT 
GGTAGCCCGCCAGCGGAAGCCCGCGCCAGTACCGGCGCGATTCACTCGCGACTGCGGGTCGGGCTGGGCATC 
CTCGCCGTGCTCACCTTCTATATCAGCCTCAGCGGCATCTGGACCTTCATCGGCGCCATCGCCGAAGGCGCG 
GGGATCGGTGCCGGCGCCAGCGGCGAGGTACTCGCCGTCGCCACCCTGATGGGCATCGCCGGGGCGGCCTGC 
GCCTCCTTCATCGGCAACCGCCTGCCGCGCGACCTGATGCTGCTCGGCGGCTACCTGGCGATGGCCGCGGCG 
ATCCTCCTGCTGATCGGCCAGCCACCGCTGGCGCGCTTCGCCCTGGCCGCGCTGCTGTTCAAGTTCACCTGG 
ACCTTCGCCCTGCCGTTCATCCTCGCCTGCCTCGCCGATCTGGACCGCTCCGGCCGCCTGATGAACGCCTCC 
AACCTGGTCATCGGCGGCGGGCTGGCCATCGGCCCGGCGCTGGCCGGACGACTCATCGAAAGCAGCGGCGGT 
TTCCTCCCGCTGCTGCCGATCGCCGCCGGCCTGGCCGGCCTCTCGCTGCTACTGGCCCTGGCCTGCCGGCCA 
CGCTGA