ViewGene
Locus Name:
GeneID:
Location:

GeneID:1776
TrivialName: PA14_29690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29690
PAO1 Ortholog Locus:PA2660
Sequence Length:1083
Protein Length:360
Start: 2573058
Stop: 2571976
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06048.1|AE004695_1 (AE004695) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 359/360 (99%), Positives = 360/360 (100%)
Sequence:
ATGCCAGCCATCCAGATCAAGTCCCCCGCACTGACCCTCAAGGCCGGTCGCCGCGCCCTCGCCCGCATCCGC
GAGCGCGGACTGCAGCCGGCCGACGTCGGCATCGTCCCCGGTGCCGCCGGCGGGCCAAAGGCGCTGGGCATC
CAGGGACTGGACCTGGCGATCTTCGGCGAGTGGCTGCCGCGCGCCCCGCGCGAACGCTCGCTGATCGGCGCC
TCCATCGGTTCCTGGCGCTTCGCCAGCGCCTGCCTGCCCGACGCCGTGGCCGGCCTCACCCGCCTCGGCGAG
CTGTACACCCGGCAGCGTTTTCCCAAAGGCGTGAGCATCGCCGAAGTCTCGCGCAAGTGCGCGGCGATGCTC
GACGACCTGCTCGCCGGCCAGGACGCGCGGATCCTCGACAACCCGCTGTACCGCCTCAACGTGGTGGTGGTG
AAGAGCCACGGGCGCCTCGCCCACGACCACAAGGCCAGCCTCGGCCTGGGGCTGTCCTCGGTGATCCGCGAC
AACCTGATCGGCCGCCGCCACCTGCACCGCCACTTCGAACGGGTGATCCTGCATGACGCCCGCCAGGCGCCG
CCGCTGGCCGCGCTGACCGACTTCCCGTCGCGCTACCTGCACCTGGACGGCGGCAACCTGCGCCAGGCGCTG
CTCGCCTCCGGCTCGATCCCGATGGTCATGGAAGGCGTCCGCAACCTGCCTGGCGCCGGCCCCGGCACCTAC
CGCGACGGCGGCCTGCTCGACTACCATCTCGACCTGCCCTACGAGGACCGCGGCGTGGTGCTCTACCCGCAC
TTCACCGACAAGGTGATCCCCGGCTGGTTCGACAAGGGCTTGCCCTGGCGCCGTGGCGACGCCGGGCGCCTG
CAGGACGTGCTGCTGCTGGCGCCGTCGCGCGAGTAcctGGCGCGCctgCCGCACGCCAAGCTGCCGGACCGC
AAGGACTTCACCCGCTACCTCGGCGACGACGACGGCCGCGAGCGCTACTGGCGCCAGGCGATGGCGGAAAGC
CGCAGGCTCGGCGACGAATTCCTCGAACTGGTCGACGGCGGCCGGCTCGGCGAACGCCTGCAAGCGCTGGAC
TGA
Translation:
MPAIQIKSPALTLKAGRRALARIRERGLQPADVGIVPGAAGGPKALGIQGLDLAIFGEWLPRAPRERSLIGA
SIGSWRFASACLPDAVAGLTRLGELYTRQRFPKGVSIAEVSRKCAAMLDDLLAGQDARILDNPLYRLNVVVV
KSHGRLAHDHKASLGLGLSSVIRDNLIGRRHLHRHFERVILHDARQAPPLAALTDFPSRYLHLDGGNLRQAL
LASGSIPMVMEGVRNLPGAGPGTYRDGGLLDYHLDLPYEDRGVVLYPHFTDKVIPGWFDKGLPWRRGDAGRL
QDVLLLAPSREYLARLPHAKLPDRKDFTRYLGDDDGRERYWRQAMAESRRLGDEFLELVDGGRLGERLQALD
*
AnnotationID:1785GeneID:1776
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 17:05:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2660
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3555




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20702




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1776
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3140
                           PA2660_tr
                           translation of PA2660
                           360
                           99.72
                           99.99
                           0
                           1873.0
     

     
     
97688
                           gb|AAG06048.1|AE004695_1
                           (AE004695) hypothetical protein PA2660 [Pseudomonas aeruginosa PAO1]
                           360
                           99.72
                           99.99
                           0
                           1873.0
     

     
     
97689
                           gb|AAN67957.1|AE016428_5
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           360
                           72.77
                           83.05
                           1
                           1389.0
     

     
     
97690
                           gb|AAQ59675.1|
                           (AE016917) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           371
                           47.97
                           63.34
                           25
                           834.0
     

     






      

          
GC ORFID: 44778How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2660Glimmer Score: 

          
Start: 2380868Stop: 2381950

          
Length: 1083


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2660 translation of PA2660Homolog Bit Score 726.0

          
Other Homologs:  t_PA2660 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAGCCATCCAGATCAAGTCCCCCGCACTGACCCTCAAGGCCGGTCGCCGCGCCCTCGCCCGCATCCGC 
GAGCGCGGACTGCAGCCGGCCGACGTCGGCATCGTCCCCGGTGCCGCCGGCGGGCCAAAGGCGCTGGGCATC 
CAGGGACTGGACCTGGCGATCTTCGGCGAGTGGCTGCCGCGCGCCCCGCGCGAACGCTCGCTGATCGGCGCC 
TCCATCGGTTCCTGGCGCTTCGCCAGCGCCTGCCTGCCCGACGCCGTGGCCGGCCTCACCCGCCTCGGCGAG 
CTGTACACCCGGCAGCGTTTTCCCAAAGGCGTGAGCATCGCCGAAGTCTCGCGCAAGTGCGCGGCGATGCTC 
GACGACCTGCTCGCCGGCCAGGACGCGCGGATCCTCGACAACCCGCTGTACCGCCTCAACGTGGTGGTGGTG 
AAGAGCCACGGGCGCCTCGCCCACGACCACAAGGCCAGCCTCGGCCTGGGGCTGTCCTCGGTGATCCGCGAC 
AACCTGATCGGCCGCCGCCACCTGCACCGCCACTTCGAACGGGTGATCCTGCATGACGCCCGCCAGGCGCCG 
CCGCTGGCCGCGCTGACCGACTTCCCGTCGCGCTACCTGCACCTGGACGGCGGCAACCTGCGCCAGGCGCTG 
CTCGCCTCCGGCTCGATCCCGATGGTCATGGAAGGCGTCCGCAACCTGCCTGGCGCCGGCCCCGGCACCTAC 
CGCGACGGCGGCCTGCTCGACTACCATCTCGACCTGCCCTACGAGGACCGCGGCGTGGTGCTCTACCCGCAC 
TTCACCGACAAGGTGATCCCCGGCTGGTTCGACAAGGGCTTGCCCTGGCGCCGTGGCGACGCCGGGCGCCTG 
CAGGACGTGCTGCTGCTGGCGCCGTCGCGCGAGTAcctGGCGCGCctgCCGCACGCCAAGCTGCCGGACCGC 
AAGGACTTCACCCGCTACCTCGGCGACGACGACGGCCGCGAGCGCTACTGGCGCCAGGCGATGGCGGAAAGC 
CGCAGGCTCGGCGACGAATTCCTCGAACTGGTCGACGGCGGCCGGCTCGGCGAACGCCTGCAAGCGCTGGAC 
TGA