ViewGene
Locus Name:
GeneID:
Location:

GeneID:1775
TrivialName: PA14_61820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61820
PAO1 Ortholog Locus:PA4673
Sequence Length:1101
Protein Length:366
Start: 5512690
Stop: 5513790
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08060.1|AE004881_3 (AE004881) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 366/366 (100%), Positives = 366/366 (100%)
Sequence:
ATGGGATTCAACTGCGGCATCGTCGGCCTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCCCTGACCAAA
TCCGGTATCGCGGCGGAAAACTTCCCGTTCTGCACCATCGAGCCGAACAGCGGCATCGTGCCGATGCCCGAC
GCGCGCCTGAACGCCCTGGCCGAGATCGTCAAGCCCGAGCGCGTACTGCCGACCACCATGGAATTCGTCGAC
ATCGCCGGCCTGGTGGCGGGCGCCTCCAAGGGTGAGGGCCTGGGCAACAAGTTCCTCGCCAACATCCGCGAG
ACCGACGCCATCGCCCACGTGGTGCGCTGCTTCGAAGACGACAACGTGATCCACGTGTCCAACAGCGTCGAC
CCCAAGCGCGACATCGAGATCATCGACCTCGAACTGATCTTCGCCGACCTCGACAGCTGCGAGAAGCAACTG
CAGAAAGTCGCCCGCAACGCCAAGGGCGGCGACAAGGAAGCCCTGGCCCAGAAGGCCCTGCTGGAAAAGCTC
ATCCCCCACTTCACCGAGGGCAAGCCGGCGCGTTCGCTGCTGAAGAACCTCGGTGACGAGGAGAAGCGCCTG
GTACGCAGCTTCCACCTGCTGACCAGCAAGCCGGTGATGTACATCGCCAACGTCGCCGAGGACGGCTTCGAG
AACAACCCGCACCTGGATGTGGTGAAGGCCATCGCCGAGGAAGAAGGCGCGGTGGTGGTGCCGGTGTGCAAC
AAGATCGAAGCCGAGATCGCCGAGCTGGAAGACGGCGAAGAGAAGGACATGTTCCTCGAGTCCCTCGGTCTC
GAGGAACCCGGCCTGAACCGTGTGATCCGTGCCGGCTACGGCCTGCTCAACCTGCAGACCTACTTCACCGCC
GGGGTGAAGGAAGTCCGCGCCTGGACCGTCCGCGTCGGCGCCACCGCCCCGCAGGCCGCCGGCGTGATCCAC
ACCGACTTCGAGAAAGGCTTCATCCGCGCCGAAGTGGTCGCCTACGACGACTTCATCCAGTTCAAGGGCGAA
CAGGGCGCCAAGGAAGCCGGCAAGTGGCGCCTGGAAGGCAAGGACTACATCGTCAAGGACGGCGACGTGATG
CATTTCCGCTTCAACGTGTAA
Translation:
MGFNCGIVGLPNVGKSTLFNALTKSGIAAENFPFCTIEPNSGIVPMPDARLNALAEIVKPERVLPTTMEFVD
IAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSVDPKRDIEIIDLELIFADLDSCEKQL
QKVARNAKGGDKEALAQKALLEKLIPHFTEGKPARSLLKNLGDEEKRLVRSFHLLTSKPVMYIANVAEDGFE
NNPHLDVVKAIAEEEGAVVVPVCNKIEAEIAELEDGEEKDMFLESLGLEEPGLNRVIRAGYGLLNLQTYFTA
GVKEVRAWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQFKGEQGAKEAGKWRLEGKDYIVKDGDVM
HFRFNV*
AnnotationID:1784GeneID:1775
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 07:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative GTP-binding protein
Cell Localization:()
Synonyms:ychF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0012
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66344.1|AE016263_1 (AE016776) GTP-binding protein, putative [Pseudomonas putida
           KT2440]
          Length = 366

 Score =  697 bits (1798), Expect = 0.0
 Identities = 346/366 (94%), Positives = 359/366 (98%)

>gb|AAO54630.1| (AE016859) GTP-binding protein YchF [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 366

 Score =  662 bits (1709), Expect = 0.0
 Identities = 326/366 (89%), Positives = 352/366 (96%)

>gb|AAN80126.1|AE016759_400 (AE016759) Probable GTP-binding protein ychF [Escherichia coli
           CFT073]
          Length = 363

 Score =  531 bits (1369), Expect = e-150
 Identities = 265/366 (72%), Positives = 306/366 (83%), Gaps = 3/366 (0%)






 
Structural Features:
COG0012, Predicted_GTPase, Predicted GTPase, probable translation factor 
[Translation, ribosomal structure and biogenesis]
CD-Length = 372 residues, 100.0% aligned
Score =  533 bits (1375), Expect = 1e-152
Identities = 230/372 (61%), Positives = 275/372 (73%), Gaps = 6/372 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3553




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20700




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37610




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1775_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1775
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3139
                           PA4673_tr
                           translation of PA4673
                           366
                           99.99
                           99.99
                           0
                           1877.0
     

     
     
97544
                           gb|AAG08060.1|AE004881_3
                           (AE004881) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           366
                           99.99
                           99.99
                           0
                           1877.0
     

     
     
97545
                           gb|AAN66344.1|AE016263_1
                           (AE016776) GTP-binding protein, putative [Pseudomonas putida KT2440]
                           366
                           94.53
                           98.08
                           0
                           1798.0
     

     
     
97546
                           gb|AAO54630.1|
                           (AE016859) GTP-binding protein YchF [Pseudomonas syringae pv. tomato str. DC3000]
                           366
                           89.07
                           96.17
                           0
                           1709.0
     

     
     
97547
                           gb|AAK81938.1|AF292566_22
                           (AF292566) putative GTP-binding protein [Pseudomonas fluorescens]
                           366
                           88.25
                           95.08
                           0
                           1689.0
     

     






      

          
GC ORFID: 44777How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4673Glimmer Score: 

          
Start: 4776370Stop: 4777470

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4673 translation of PA4673Homolog Bit Score 727.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5098 (ORF: BLASTX 664.0), t_PA4673 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGATTCAACTGCGGCATCGTCGGCCTGCCCAACGTCGGCAAGTCCACCCTGTTCAACGCCCTGACCAAA 
TCCGGTATCGCGGCGGAAAACTTCCCGTTCTGCACCATCGAGCCGAACAGCGGCATCGTGCCGATGCCCGAC 
GCGCGCCTGAACGCCCTGGCCGAGATCGTCAAGCCCGAGCGCGTACTGCCGACCACCATGGAATTCGTCGAC 
ATCGCCGGCCTGGTGGCGGGCGCCTCCAAGGGTGAGGGCCTGGGCAACAAGTTCCTCGCCAACATCCGCGAG 
ACCGACGCCATCGCCCACGTGGTGCGCTGCTTCGAAGACGACAACGTGATCCACGTGTCCAACAGCGTCGAC 
CCCAAGCGCGACATCGAGATCATCGACCTCGAACTGATCTTCGCCGACCTCGACAGCTGCGAGAAGCAACTG 
CAGAAAGTCGCCCGCAACGCCAAGGGCGGCGACAAGGAAGCCCTGGCCCAGAAGGCCCTGCTGGAAAAGCTC 
ATCCCCCACTTCACCGAGGGCAAGCCGGCGCGTTCGCTGCTGAAGAACCTCGGTGACGAGGAGAAGCGCCTG 
GTACGCAGCTTCCACCTGCTGACCAGCAAGCCGGTGATGTACATCGCCAACGTCGCCGAGGACGGCTTCGAG 
AACAACCCGCACCTGGATGTGGTGAAGGCCATCGCCGAGGAAGAAGGCGCGGTGGTGGTGCCGGTGTGCAAC 
AAGATCGAAGCCGAGATCGCCGAGCTGGAAGACGGCGAAGAGAAGGACATGTTCCTCGAGTCCCTCGGTCTC 
GAGGAACCCGGCCTGAACCGTGTGATCCGTGCCGGCTACGGCCTGCTCAACCTGCAGACCTACTTCACCGCC 
GGGGTGAAGGAAGTCCGCGCCTGGACCGTCCGCGTCGGCGCCACCGCCCCGCAGGCCGCCGGCGTGATCCAC 
ACCGACTTCGAGAAAGGCTTCATCCGCGCCGAAGTGGTCGCCTACGACGACTTCATCCAGTTCAAGGGCGAA 
CAGGGCGCCAAGGAAGCCGGCAAGTGGCGCCTGGAAGGCAAGGACTACATCGTCAAGGACGGCGACGTGATG 
CATTTCCGCTTCAACGTGTAA