ViewGene

Locus Name:
GeneID:
Location:

GeneID:1774
TrivialName: PA14_29270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29270
PAO1 Ortholog Locus:PA2695
Sequence Length:1104
Protein Length:367
Start: 2532804
Stop: 2533907
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06083.1|AE004697_8 (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 366/367 (99%), Positives = 366/367 (99%)
Sequence:
ATGAAAGCAGTACGCCAGGGTCGCGGCGTAACGGGGTTGCTCATGCTCCTGGCGCTGGCCGGGTGCAGTTCG
CGGTCGGCGGAGCCGCCGCCGCCCAACCCCGACGAAGTACGGGCGAAGATCGTCCGCCTGATGCCGGCCACG
GTGCGCGATCGCCAAGGGTGGGCCAGCGATATCTACGCGGCCTTTTCCGCCCAGCAGATCTACCCCAGCGAC
GAGAATCTTTGTGCGGTGCTGGCGGTGACCGAGCAGGAGTCCACCTACCAGGTCGACCCGCCGGTGGCCGGC
CTGGGCAGGATCGCCACCCGCGAGGTCGAGCGTCGTGCCGGCAAGCTGCACGTGCCGGCGTTCCTGGTCAGC
TCGGCGCTGAATATCAAGTCGCCCGATGGCCGCACCTACAGCCAGCGCCTGGCCGCGGCGCGCACGGAGAAG
GAACTGAGCGAGACATTCGACGATTTCATCGCCATCGTGCCCATGGGCGGCAAGCTGTTCGGCGGCTTCAAC
CCGGTACACACCGGCGGGCCGATGCAGGTCAGCATCGCTTTCGCCGAGCAGCACGCGGACGGCTATCCCTAT
CCGCTGGACGGCAGCATCCGCCGCGAGGTGTTCAGCCGACGCGGCGGCATGTATTTCGGCATCGCCCACCTG
CTTGGCTATCCGGCGGACTACCCGGCGCCGCTGTACCGCTTCGCCGACTTCAACGCCGGCTGGTATGCCAGT
CGCAACGCCGCGTTCCAGAGCGCGGTGAGTCGCGTCTCGGGGATTCCGCTGGCGCTGGATGGCGATCTGATC
CGCTACGGCACGCGCACGCCGGGCTCCACCGAACTGGCCGTGCGCAGCCTCGGCAAGCGCCTGGACATGAGC
GACGCGGCGATCCGCCGGGCGCTGGAGCAGGGCGACAGCCCGGAGTTCGCCGACAGCGCGCTGTACCGCAAG
GTCTTCGCCCTGGCTGAAAGCGCCACCGGCAAGACGCTGCCCCGCGCCGTGCTGCCGGGGATCGCCCTGGAG
AGCCCGAAGATCACCCGCAAGCTGACCACCGCCTGGTTCGCTAAGCGCGTCGACGAACGCTACCAGCGCTGC
ATGGCGCGCGTGCGGAAACGCTGA
Translation:
MKAVRQGRGVTGLLMLLALAGCSSRSAEPPPPNPDEVRAKIVRLMPATVRDRQGWASDIYAAFSAQQIYPSD
ENLCAVLAVTEQESTYQVDPPVAGLGRIATREVERRAGKLHVPAFLVSSALNIKSPDGRTYSQRLAAARTEK
ELSETFDDFIAIVPMGGKLFGGFNPVHTGGPMQVSIAFAEQHADGYPYPLDGSIRREVFSRRGGMYFGIAHL
LGYPADYPAPLYRFADFNAGWYASRNAAFQSAVSRVSGIPLALDGDLIRYGTRTPGSTELAVRSLGKRLDMS
DAAIRRALEQGDSPEFADSALYRKVFALAESATGKTLPRAVLPGIALESPKITRKLTTAWFAKRVDERYQRC
MARVRKR*
AnnotationID:1783GeneID:1774
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:40
Gene Name:
Confidence Code:3
GeneProduct:putative outer membrane lipoprotein
Cell Localization:()
Synonyms:yaiW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAL19331.1| (AE008713) putative outer membrane lipoprotein [Salmonella
           typhimurium LT2]
          Length = 364

 Score =  448 bits (1153), Expect = e-125
 Identities = 220/352 (62%), Positives = 275/352 (78%), Gaps = 2/352 (0%)

>gb|AAO70075.1| (AE016842) putative lipoprotein [Salmonella enterica subsp.
           enterica serovar Typhi Ty2]
          Length = 364

 Score =  446 bits (1148), Expect = e-125
 Identities = 219/352 (62%), Positives = 275/352 (78%), Gaps = 2/352 (0%)

Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:3551
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20698
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1774

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3138 PA2695_tr translation of PA2695 367 99.72 99.72 0 1877.0
97527 gb|AAG06083.1|AE004697_8 (AE004697) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 367 99.72 99.72 0 1877.0
97528 gb|AAO55996.1| (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 370 63.51 77.83 15 1226.0
97529 gb|AAN69399.1|AE016576_9 (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440] 367 60.76 73.84 17 1166.0
97532 gb|AAB18101.1| (U73857) hypothetical protein [Escherichia coli] 369 60.70 75.88 7 1158.0
GC ORFID: 44776How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2695Glimmer Score:
Start: 2421122Stop: 2420019
Length: 1104
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2695 translation of PA2695Homolog Bit Score 727.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1260 (ORF: BLASTX 479.0), t_PA2695 (ORF: GLIMMER)
GC ORF Sequence
ATGAAAGCAGTACGCCAGGGTCGCGGCGTAACGGGGTTGCTCATGCTCCTGGCGCTGGCCGGGTGCAGTTCG
CGGTCGGCGGAGCCGCCGCCGCCCAACCCCGACGAAGTACGGGCGAAGATCGTCCGCCTGATGCCGGCCACG
GTGCGCGATCGCCAAGGGTGGGCCAGCGATATCTACGCGGCCTTTTCCGCCCAGCAGATCTACCCCAGCGAC
GAGAATCTTTGTGCGGTGCTGGCGGTGACCGAGCAGGAGTCCACCTACCAGGTCGACCCGCCGGTGGCCGGC
CTGGGCAGGATCGCCACCCGCGAGGTCGAGCGTCGTGCCGGCAAGCTGCACGTGCCGGCGTTCCTGGTCAGC
TCGGCGCTGAATATCAAGTCGCCCGATGGCCGCACCTACAGCCAGCGCCTGGCCGCGGCGCGCACGGAGAAG
GAACTGAGCGAGACATTCGACGATTTCATCGCCATCGTGCCCATGGGCGGCAAGCTGTTCGGCGGCTTCAAC
CCGGTACACACCGGCGGGCCGATGCAGGTCAGCATCGCTTTCGCCGAGCAGCACGCGGACGGCTATCCCTAT
CCGCTGGACGGCAGCATCCGCCGCGAGGTGTTCAGCCGACGCGGCGGCATGTATTTCGGCATCGCCCACCTG
CTTGGCTATCCGGCGGACTACCCGGCGCCGCTGTACCGCTTCGCCGACTTCAACGCCGGCTGGTATGCCAGT
CGCAACGCCGCGTTCCAGAGCGCGGTGAGTCGCGTCTCGGGGATTCCGCTGGCGCTGGATGGCGATCTGATC
CGCTACGGCACGCGCACGCCGGGCTCCACCGAACTGGCCGTGCGCAGCCTCGGCAAGCGCCTGGACATGAGC
GACGCGGCGATCCGCCGGGCGCTGGAGCAGGGCGACAGCCCGGAGTTCGCCGACAGCGCGCTGTACCGCAAG
GTCTTCGCCCTGGCTGAAAGCGCCACCGGCAAGACGCTGCCCCGCGCCGTGCTGCCGGGGATCGCCCTGGAG
AGCCCGAAGATCACCCGCAAGCTGACCACCGCCTGGTTCGCTAAGCGCGTCGACGAACGCTACCAGCGCTGC
ATGGCGCGCGTGCGGAAACGCTGA