ViewGene
Locus Name:
GeneID:
Location:

GeneID:1773
TrivialName: PA14_50660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50660
PAO1 Ortholog Locus:PA1061
Sequence Length:1098
Protein Length:365
Start: 4501084
Stop: 4499987
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04450.1|AE004538_2 (AE004538) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 361/365 (98%), Positives = 362/365 (99%)
Sequence:
ATGACCGTCGACCAACGCCAATGGGCCCGTGAGGCGATCCGCATCATCGAAGCGGATTTCCAGCGCAGCGCC
GATACCCATTTGATCCCTCTGGAGACTCCCGGCCTGCCTGGCGTCGAACTGTACTTCAAGGACGAGTCCAGC
CACCCCACCGGCAGCCTCAAGCATCGCCTGGCGCGCTCGCTGTTCCTCTATGCGCTGTGCAACGGCTGGCTC
GGGCCGGCCGCGCCGGTGATCGAGGCATCAAGCGGCTCCACGGCGATTTCCGAAGCCTATTTCGCACGCCTG
CTGGGCCTGCCCTTCATCGCCGTGATGCCGGCCAGCACCTCGAAGGAAAAGATCGCCCAGATCGCCTTCTAC
GGCGGCCAGAGCCACCTGGTGGAGGACCCCACCCAGATCTACGCCGAGTCCGAACGCCTGGCGCGGGAGAGC
GGTGGCCATTTCATGGACCAGTTCACCTATGCCGAGCGCGCCACCGACTGGCGGGCGAACAACAACATCGCC
GAGTCGATCTTCCAGCAGATGCGCCACGAGCCGTACCCGACCCCGACCTGGCTGATCTCCAGCCCCGGTACC
GGCGGCACCCTGGCGACCCTCGGCCGCTACGTGCGCTATCGCCAGCACTGCACCCGGGTACTCTGCGCCGAC
GCCGAGCGTTCGGTGTTCTTCGACGCCTATGTCAGCGGCGACCGTGGCCTGACCCTGGATTGCGGTTCGCGG
ATCGAGGGCATCGGCCGGCCGCGGGTCGAGGCGTCCTTCCTGCCGGAAGTGATCGACGCGATGGTCAAGGTG
CCGGACGCCTGGTCGCTGGCGGCCATGCATTACCTGGCCCGGCGCCTGGGGCGGCGGGTCGGCGGCTCCAGC
GGAACCAACCTGATCGGCGCCCTGGTGGCCGCACGGCAAATGGTCGCGGCCGGCGAGAAGGGGTCGCTGGTG
GCGATTCTCTGCGATGGCGGCGAACGCTATGCGACCACCTATTATGATCCGGTCTGGCTGGCCAGGCAGGGC
TATGCGCTGGAACCCCTGGTCGAGGCGCTGGCTGCCTGCGTCGAGCGCGGCGTGGCGTTGCCCGACGGGCTG
CTGGTGGTTGGACTTTGA
Translation:
MTVDQRQWAREAIRIIEADFQRSADTHLIPLETPGLPGVELYFKDESSHPTGSLKHRLARSLFLYALCNGWL
GPAAPVIEASSGSTAISEAYFARLLGLPFIAVMPASTSKEKIAQIAFYGGQSHLVEDPTQIYAESERLARES
GGHFMDQFTYAERATDWRANNNIAESIFQQMRHEPYPTPTWLISSPGTGGTLATLGRYVRYRQHCTRVLCAD
AERSVFFDAYVSGDRGLTLDCGSRIEGIGRPRVEASFLPEVIDAMVKVPDAWSLAAMHYLARRLGRRVGGSS
GTNLIGALVAARQMVAAGEKGSLVAILCDGGERYATTYYDPVWLARQGYALEPLVEALAACVERGVALPDGL
LVVGL*
AnnotationID:1782GeneID:1773
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:04
Gene Name:
Confidence Code:3
GeneProduct:putative cysteine synthase
Cell Localization:()
Synonyms:PA1061
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0031, pfam00291
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0031, CysK, Cysteine synthase. Score: 280, 2e-76
pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Score: 155, 1e-38






   
Genomic Context:






   
Comment:


















    ReferenceID:3549




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20696




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1773
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3137
                           PA1061_tr
                           translation of PA1061
                           365
                           98.90
                           99.17
                           0
                           1877.0
     

     
     
97507
                           gb|AAG04450.1|AE004538_2
                           (AE004538) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           365
                           98.90
                           99.17
                           0
                           1877.0
     

     
     
97508
                           gb|AAM39895.1|
                           (AE012156) cysteine synthase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           371
                           65.49
                           76.54
                           10
                           1232.0
     

     
     
97509
                           gb|AAM38471.1|
                           (AE012013) cysteine synthase [Xanthomonas axonopodis pv. citri str. 306]
                           376
                           64.89
                           74.46
                           14
                           1232.0
     

     
     
97511
                           gb|AAO27997.1|
                           (AE012553) cysteine synthase [Xylella fastidiosa Temecula1]
                           373
                           63.53
                           74.26
                           13
                           1211.0
     

     






      

          
GC ORFID: 44775How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1061Glimmer Score: 

          
Start: 452824Stop: 453921

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1061 translation of PA1061Homolog Bit Score 727.0

          
Other Homologs:  t_PA1061 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGTCGACCAACGCCAATGGGCCCGTGAGGCGATCCGCATCATCGAAGCGGATTTCCAGCGCAGCGCC 
GATACCCATTTGATCCCTCTGGAGACTCCCGGCCTGCCTGGCGTCGAACTGTACTTCAAGGACGAGTCCAGC 
CACCCCACCGGCAGCCTCAAGCATCGCCTGGCGCGCTCGCTGTTCCTCTATGCGCTGTGCAACGGCTGGCTC 
GGGCCGGCCGCGCCGGTGATCGAGGCATCAAGCGGCTCCACGGCGATTTCCGAAGCCTATTTCGCACGCCTG 
CTGGGCCTGCCCTTCATCGCCGTGATGCCGGCCAGCACCTCGAAGGAAAAGATCGCCCAGATCGCCTTCTAC 
GGCGGCCAGAGCCACCTGGTGGAGGACCCCACCCAGATCTACGCCGAGTCCGAACGCCTGGCGCGGGAGAGC 
GGTGGCCATTTCATGGACCAGTTCACCTATGCCGAGCGCGCCACCGACTGGCGGGCGAACAACAACATCGCC 
GAGTCGATCTTCCAGCAGATGCGCCACGAGCCGTACCCGACCCCGACCTGGCTGATCTCCAGCCCCGGTACC 
GGCGGCACCCTGGCGACCCTCGGCCGCTACGTGCGCTATCGCCAGCACTGCACCCGGGTACTCTGCGCCGAC 
GCCGAGCGTTCGGTGTTCTTCGACGCCTATGTCAGCGGCGACCGTGGCCTGACCCTGGATTGCGGTTCGCGG 
ATCGAGGGCATCGGCCGGCCGCGGGTCGAGGCGTCCTTCCTGCCGGAAGTGATCGACGCGATGGTCAAGGTG 
CCGGACGCCTGGTCGCTGGCGGCCATGCATTACCTGGCCCGGCGCCTGGGGCGGCGGGTCGGCGGCTCCAGC 
GGAACCAACCTGATCGGCGCCCTGGTGGCCGCACGGCAAATGGTCGCGGCCGGCGAGAAGGGGTCGCTGGTG 
GCGATTCTCTGCGATGGCGGCGAACGCTATGCGACCACCTATTATGATCCGGTCTGGCTGGCCAGGCAGGGC 
TATGCGCTGGAACCCCTGGTCGAGGCGCTGGCTGCCTGCGTCGAGCGCGGCGTGGCGTTGCCCGACGGGCTG 
CTGGTGGTTGGACTTTGA