ViewGene
Locus Name:
GeneID:
Location:

GeneID:1772
TrivialName: PA14_08520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08520
PAO1 Ortholog Locus:PA0666
Sequence Length:1092
Protein Length:363
Start: 729716
Stop: 728625
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04055.1|AE004501_7 (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 359/363 (98%), Positives = 360/363 (99%)
Sequence:
GTGCCGCGCTACCTGGGGTTGATGTCCGGAACCAGCCTGGACGGCATGGACATCGTCCTGATCGAGCAAGGT
GATCGCACCACCTTGCTCGCTTCCCATTACCTACCCATGCCGGCCGGGCTGCGCGAAGACATCCTCGCCCTG
TGCGTCCCCGGTCCCGATGAAATCGCCCGCGCCGCCGAAGTCGAGCAACGCTGGGTCGCCCTTGCAGCACAG
GGCGTGCGCGAACTGCTGCTCCAGCAGCAGATGAGCCCCGACGAAGTCCGTGCTATCGGCAGTCACGGTCAA
ACCATCCGACATGAACCCACTCGCCACTTCACGGTGCAGATCGGCAACCCCGCCCTGCTGGCGGAGCTGACC
GGCATCGATGTCGTCGCCGACTTCCGCCGCCGCGACGTCGCAGCCGGCGGCCAGGGCGCCCCGCTGGTACCG
GCCTTCCATCAGGCGCTGTTTGGCGATGATGACGCCTCCAGGGCGGTCCTGAACATCGGTGGCTTCAGCAAC
GTTTCGCTGCTCAGCCCCGGAAAGCCGGTACGCGGCTTCGACTGCGGCCCGGGCAACGTGCTGATGGACGCC
TGGATTCATCACCAACGCGGCGAACATTTCGACCGGGACGGTGCGTGGGCCGCCAGCGGCCAGATGAACCAC
GCACTGCTGGCAAGCCTGCTGGCGGATGAGTTCTTCGCCGCGCGTGGCCCCAAGAGCACCGGGCGCGAGCGC
TTCAACCTGTCCTGGCTGCAGGAGCACCTGGCTCGTCACCCTGCCTTGCCGGCAGCGGATATCCAGGCAACC
CTGCTGGAGCTGAGCGCGCGCAGCATCAGCGAATCGCTGCTGGACGCCCAGCCGGACTGCGAAGAGGTGCTG
GTATGCGGCGGCGGCGCCTTCAATACGGCGCTGATGAAGCGCCTGGCCATGCTGATGCCCGAAGCTCGGGTC
GCCAGTACCGACGAATACGGCATTCCCCCTGCCTGGATGGAGGGCATGGCATTCGCCTGGCTAGCCCATCGG
TTTCTCGAGCGCCTGCCCGGCAACTGCCCTGATGTGACCGGTGCGCTCGGTCCCAGAACTCTGGGCGCGCTG
TATCCCGCCTGA
Translation:
MPRYLGLMSGTSLDGMDIVLIEQGDRTTLLASHYLPMPAGLREDILALCVPGPDEIARAAEVEQRWVALAAQ
GVRELLLQQQMSPDEVRAIGSHGQTIRHEPTRHFTVQIGNPALLAELTGIDVVADFRRRDVAAGGQGAPLVP
AFHQALFGDDDASRAVLNIGGFSNVSLLSPGKPVRGFDCGPGNVLMDAWIHHQRGEHFDRDGAWAASGQMNH
ALLASLLADEFFAARGPKSTGRERFNLSWLQEHLARHPALPAADIQATLLELSARSISESLLDAQPDCEEVL
VCGGGAFNTALMKRLAMLMPEARVASTDEYGIPPAWMEGMAFAWLAHRFLERLPGNCPDVTGALGPRTLGAL
YPA*
AnnotationID:1781GeneID:1772
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:09
Gene Name:
Confidence Code:3
GeneProduct:putative chaperone
Cell Localization:()
Synonyms:PA0666
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2377
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2377, Predicted molecular chaperone distantly related 
to HSP70-fold metalloproteases 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 371 residues,  98.9% aligned
Score =  439 bits (1130), Expect = 2e-124
Identities = 202/367 (55%), Positives = 248/367 (67%), Gaps = 4/367 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:14423




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20694




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34617




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1772_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1772
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3136
                           PA0666_tr
                           translation of PA0666
                           363
                           98.89
                           99.17
                           0
                           1878.0
     

     
     
97469
                           gb|AAG04055.1|AE004501_7
                           (AE004501) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           363
                           98.62
                           99.17
                           0
                           1875.0
     

     
     
97470
                           gb|AAN66064.1|AE016235_3
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           363
                           66.66
                           76.58
                           0
                           1248.0
     

     
     
97471
                           gb|AAO54148.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           363
                           61.98
                           75.75
                           7
                           1180.0
     

     
     
97472
                           emb|CAE34715.1|
                           (BX640450) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           383
                           51.43
                           64.22
                           25
                           912.0
     

     






      

          
GC ORFID: 44774How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0666Glimmer Score: 

          
Start: 6531059Stop: 6529968

          
Length: 1092


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0666 translation of PA0666Homolog Bit Score 728.0

          
Other Homologs:  psyr_15may02_Scaffold14_revised_gene2393 (ORF: BLASTX 472.0), t_PA0666 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCCGCGCTACCTGGGGTTGATGTCCGGAACCAGCCTGGACGGCATGGACATCGTCCTGATCGAGCAAGGT 
GATCGCACCACCTTGCTCGCTTCCCATTACCTACCCATGCCGGCCGGGCTGCGCGAAGACATCCTCGCCCTG 
TGCGTCCCCGGTCCCGATGAAATCGCCCGCGCCGCCGAAGTCGAGCAACGCTGGGTCGCCCTTGCAGCACAG 
GGCGTGCGCGAACTGCTGCTCCAGCAGCAGATGAGCCCCGACGAAGTCCGTGCTATCGGCAGTCACGGTCAA 
ACCATCCGACATGAACCCACTCGCCACTTCACGGTGCAGATCGGCAACCCCGCCCTGCTGGCGGAGCTGACC 
GGCATCGATGTCGTCGCCGACTTCCGCCGCCGCGACGTCGCAGCCGGCGGCCAGGGCGCCCCGCTGGTACCG 
GCCTTCCATCAGGCGCTGTTTGGCGATGATGACGCCTCCAGGGCGGTCCTGAACATCGGTGGCTTCAGCAAC 
GTTTCGCTGCTCAGCCCCGGAAAGCCGGTACGCGGCTTCGACTGCGGCCCGGGCAACGTGCTGATGGACGCC 
TGGATTCATCACCAACGCGGCGAACATTTCGACCGGGACGGTGCGTGGGCCGCCAGCGGCCAGATGAACCAC 
GCACTGCTGGCAAGCCTGCTGGCGGATGAGTTCTTCGCCGCGCGTGGCCCCAAGAGCACCGGGCGCGAGCGC 
TTCAACCTGTCCTGGCTGCAGGAGCACCTGGCTCGTCACCCTGCCTTGCCGGCAGCGGATATCCAGGCAACC 
CTGCTGGAGCTGAGCGCGCGCAGCATCAGCGAATCGCTGCTGGACGCCCAGCCGGACTGCGAAGAGGTGCTG 
GTATGCGGCGGCGGCGCCTTCAATACGGCGCTGATGAAGCGCCTGGCCATGCTGATGCCCGAAGCTCGGGTC 
GCCAGTACCGACGAATACGGCATTCCCCCTGCCTGGATGGAGGGCATGGCATTCGCCTGGCTAGCCCATCGG 
TTTCTCGAGCGCCTGCCCGGCAACTGCCCTGATGTGACCGGTGCGCTCGGTCCCAGAACTCTGGGCGCGCTG 
TATCCCGCCTGA