ViewGene

Locus Name:
GeneID:
Location:

GeneID:1771
TrivialName: PA14_67970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67970
PAO1 Ortholog Locus:PA5145
Sequence Length:1107
Protein Length:368
Start: 6064672
Stop: 6065778
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08530.1|AE004927_8 (AE004927) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 364/368 (98%), Positives = 365/368 (99%)
Sequence:
ATGAACGACGTCGACGTACTGGTAGTCGGCGCCGGCGCCCTCGGCCTGGCCTGCGCCGCGCGCCTGGCCGAA
GCCGGCCACGGCGTACTGGTGGCGGAGCGCGAACGGCTGGTCGGTAGCCACACCTCCAGTCGCAATTCCGAA
GTGATCCACGCCGGCCTCTACTACCCGCCCGGCTCGCTCAAGGCCGATCTCTGCCTGGAAGGCCGCGAACGC
CTGTACGCCTGGTGCGCCCGCCACGGCGTCGGCCACCGGCGCATCGGCAAGCTGCTGGTGGCGGTGGAGGAA
AACGAGCGCGAGAAGCTCCAGGCCCTGGCGGCCAACGCCCGCGCCTGCGGGGTCGACGACCTGATGCCGCTG
GACGGCACCACGCTGCGCGCGCTGGAGCCCCAGGTCCGCGGGGTCGCCGCCCTGCTCTCGCCGAGCACGGGA
ATCATCGACAGCCACGCCTACCTGCAATCGCTGCAGGCCGTCGCCGAGCGCCACGGCGCACAACTGGCGCTG
GACACCCGGGTCGACCGCCTGGAGCGCCACGCCGGCGGCTGGCGCGCCGAAGGACAGAGCGTCGGCGAAGCG
TTCCGGTTGCGCGCGGGCTGGGTGGTCAATGCCGGCGGCCTGTTCGCCCAGGCGCTGGCGCAACGCACCGAA
GGCCTCGATCCGCGCCTGGTGCCGGCGCTGCACCTGTGCCAGGGGCGCTATTTCTCCTACAGCGGCCGCTCG
CCGTTCCGCCACcTGGTCTACCCGATGCCCGAGGCGCGCACCGCCGGGCTCGGCATCCACGCCACCCTCGAC
CTCGGTGGCCAGTTGCGCTTCGGTCCCGACGTGAATTACGTGGACAACCTCGACTACCGCGTCGACGAATCC
CTCCGCCCCACCTTCGCCCAGGCCATCTCGCGCTACTTCCCCGGCATCGATCCTCGGCGCCTGGCCGCCGGC
TACGCCGGCATCCGGCCCAAGCTCGGTGGGCCGGGGGAACCCGCCGCCGACTTCATCATCCAAACCCCTGCC
GAACACGACCTGCCCGGCCTGGTCAACCTGTTCGGCATCGAGTCGCCCGGCCTCACCGCCAGCCTGGCGCTC
GCCGAACGGGTCGCCCGCGCACTCTGA
Translation:
MNDVDVLVVGAGALGLACAARLAEAGHGVLVAERERLVGSHTSSRNSEVIHAGLYYPPGSLKADLCLEGRER
LYAWCARHGVGHRRIGKLLVAVEENEREKLQALAANARACGVDDLMPLDGTTLRALEPQVRGVAALLSPSTG
IIDSHAYLQSLQAVAERHGAQLALDTRVDRLERHAGGWRAEGQSVGEAFRLRAGWVVNAGGLFAQALAQRTE
GLDPRLVPALHLCQGRYFSYSGRSPFRHLVYPMPEARTAGLGIHATLDLGGQLRFGPDVNYVDNLDYRVDES
LRPTFAQAISRYFPGIDPRRLAAGYAGIRPKLGGPGEPAADFIIQTPAEHDLPGLVNLFGIESPGLTASLAL
AERVARAL*
AnnotationID:1780GeneID:1771
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 13:01:46
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase
Cell Localization:()
Synonyms:PA5145
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative exported protein
Functional Category Confidence Code:5
COGs:COG0579
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAE34407.1| (BX640449) putative conserved exported protein [Bordetella
           bronchiseptica]
          Length = 369

 Score =  349 bits (896), Expect = 1e-95
 Identities = 185/367 (50%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

>emb|CAE43520.1| (BX640420) putative conserved exported protein [Bordetella
           pertussis]
          Length = 369

 Score =  348 bits (894), Expect = 2e-95
 Identities = 185/367 (50%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

>emb|CAE38893.1| (BX640434) putative conserved exported protein [Bordetella
           parapertussis]
          Length = 369

 Score =  347 bits (889), Expect = 9e-95
 Identities = 183/367 (49%), Positives = 236/367 (64%), Gaps = 4/367 (1%)

Structural Features:
COG0579, COG0579, Predicted dehydrogenase 
CD-Length = 429 residues,  86.7% aligned
Score =  348 bits (895), Expect = 5e-97
Identities = 145/376 (38%), Positives = 193/376 (51%), Gaps = 12/376 (3%)
Genomic Context:
Comment:
ReferenceID:3545
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20692
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34924
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1771_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1771

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3135 PA5145_tr translation of PA5145 368 98.91 99.18 0 1879.0
97456 gb|AAG08530.1|AE004927_8 (AE004927) hypothetical protein PA5145 [Pseudomonas aeruginosa PAO1] 368 98.91 99.18 0 1879.0
97457 dbj|BAB51347.1| (AP003004) hypothetical protein [Mesorhizobium loti] 372 52.95 65.32 6 948.0
97460 gb|AAQ57814.1| (AE016910) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472] 375 52.53 64.53 18 909.0
97458 gb|AAL43715.1| (AE009221) dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)] 380 50.26 62.10 25 925.0
GC ORFID: 44773How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5145Glimmer Score:
Start: 5328357Stop: 5329463
Length: 1107
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5145 translation of PA5145Homolog Bit Score 728.0
Other Homologs: t_PA5145 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGACGTCGACGTACTGGTAGTCGGCGCCGGCGCCCTCGGCCTGGCCTGCGCCGCGCGCCTGGCCGAA
GCCGGCCACGGCGTACTGGTGGCGGAGCGCGAACGGCTGGTCGGTAGCCACACCTCCAGTCGCAATTCCGAA
GTGATCCACGCCGGCCTCTACTACCCGCCCGGCTCGCTCAAGGCCGATCTCTGCCTGGAAGGCCGCGAACGC
CTGTACGCCTGGTGCGCCCGCCACGGCGTCGGCCACCGGCGCATCGGCAAGCTGCTGGTGGCGGTGGAGGAA
AACGAGCGCGAGAAGCTCCAGGCCCTGGCGGCCAACGCCCGCGCCTGCGGGGTCGACGACCTGATGCCGCTG
GACGGCACCACGCTGCGCGCGCTGGAGCCCCAGGTCCGCGGGGTCGCCGCCCTGCTCTCGCCGAGCACGGGA
ATCATCGACAGCCACGCCTACCTGCAATCGCTGCAGGCCGTCGCCGAGCGCCACGGCGCACAACTGGCGCTG
GACACCCGGGTCGACCGCCTGGAGCGCCACGCCGGCGGCTGGCGCGCCGAAGGACAGAGCGTCGGCGAAGCG
TTCCGGTTGCGCGCGGGCTGGGTGGTCAATGCCGGCGGCCTGTTCGCCCAGGCGCTGGCGCAACGCACCGAA
GGCCTCGATCCGCGCCTGGTGCCGGCGCTGCACCTGTGCCAGGGGCGCTATTTCTCCTACAGCGGCCGCTCG
CCGTTCCGCCACcTGGTCTACCCGATGCCCGAGGCGCGCACCGCCGGGCTCGGCATCCACGCCACCCTCGAC
CTCGGTGGCCAGTTGCGCTTCGGTCCCGACGTGAATTACGTGGACAACCTCGACTACCGCGTCGACGAATCC
CTCCGCCCCACCTTCGCCCAGGCCATCTCGCGCTACTTCCCCGGCATCGATCCTCGGCGCCTGGCCGCCGGC
TACGCCGGCATCCGGCCCAAGCTCGGTGGGCCGGGGGAACCCGCCGCCGACTTCATCATCCAAACCCCTGCC
GAACACGACCTGCCCGGCCTGGTCAACCTGTTCGGCATCGAGTCGCCCGGCCTCACCGCCAGCCTGGCGCTC
GCCGAACGGGTCGCCCGCGCACTCTGA