ViewGene

Locus Name:
GeneID:
Location:

GeneID: 177

TrivialName: PA14_60070

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_60070

PAO1 Ortholog Locus:

Sequence Length: 2424

Protein Length: 807

Start: 5348012

Stop: 5350435

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAP84136.1| (AY273869) pathogenesis related protein [Pseudomonas aeruginosa] Identities = 807/807 (100%), Positives = 807/807 (100%)

Sequence:

ATGAAGTTACAGGCATATCGGCTGCAGAACTACCGCCGGCTGCGCGATGTTGTCATCGAGCTCGATGACGAA
ATTTCTATCTTTGTCGGTGCCAACAACAGCGGGAAGACATCCGCCGTCCAAGGCCTGTACTCAATGCTTCGC
GGCGAAGTGAAGAAGTTCGAGCTCTTTGACTTCAGTGCGGCGCTGTGGGCCGAGATCGATGCGGTCGGCAGG
ACGCCCCCTGGCGATGAGGATGCGCCCAAAAGGTTACCGTCCATACTCTTGGATCTCTGGTTCCGCGTCGGT
GAAGACGACCTCGCCACTGCGATGTCGCTGCTGCCGAGCACTGAGTGGGACGGCAAGTGCGTCGGGATCCGG
GTAGCGTTCGAGCCTCGGGATGCCCACGAGCTCGTCTGGAAGTTCCATGAACTACATGAGAAGGCCAACAAC
GCAGCTGTCGCGCTTGCGGCCAAGCGCAAGGCCGCCGGGGAGCAAGCTGTGGAGGCGGGCGCGGAAGACGCG
GCTGCGGTGGTGGCCGATGCCGGCGAGTACAAGCCTTGGCCAGAAAGCCTGACGAAGTACCTCACAAAGGAA
CTGAGCAAGGAATACACCTTCCGCTACTACGTGCTCGATGAGCGGGCTTTTGTCGGCTATCAGGCAAGGGAG
GCCGACTACGAGCCGCTACCCCTAGGCAAGGAGCCGGGCGGTGCAGCCATTCTCAAGTCGCTGGTGAGGGTC
GACTTCCTGCGCGCGCAGCGGCACCTCGATGACCCAGATGCCGGTAGCTCTGATCGCGCAGAGAGCTTGTCG
CGGCGTCTGAGCAGGTTCTATCACCGCAACCTGGAGAAGCGTGGCGACGACCATGCGGCTCTCAAGGCGCTA
GATACCTCGGAGAAGGAGCTGAACTTCCACCTGAAGGAAGTCTTCAATGACACCCTCACGCGCCTGGCCAAG
CTCGGCTATCCGGGCGTCAACAATCCGGAGATCGTGATTCGGGCGGCCTTGGATCCGACCACTGTCTTGGGG
CAAGACGCCAAGGTTCACTACGTGATCCCGGGCGTAGCTTCCGCCCAACTGCCAGACAGCTACAATGGCCTG
GGGTTCAAGAATCTGGTCTACATGGTGGTTGAGCTGCTCGACTTGCACGAGCAGTGGAAAGCCGAGGATGAC
AAGCGAGCTCCGCTTCATTTGGTCTTCATTGAGGAGCCTGAGGCGCATCTGCACGCGCAGATCCAGCAGGTC
TTCATCAGGAACGTTTTGCGCCTCCTTGAGGATGCTAACGATCACGCGACTTTGTTCCACACGCAGCTCGTC
ATCACCACGCACTCCCCGCACATCCTCTATGAACGCGGATTCTCGCCCATTCGGTACTTCCGCCGCGTCAAC
GACCAGTTGGGCCATCACACGGATGTGCGCAATCTGTCGCTATTCAAAACGGGCGCGTCCGACGCTCCAGCG
CGCGAATTCCTGCAGCGGTATCTGAAGCTGACGCACTGCGATCTCTTTTTTTCCGACGCGGTGATATTGGTG
GAAGGCAACGTCGAGCGTCTGCTCCTGCCTGCAATGATCGAGTTGGTGGCCAAGCGCCTGCGTTCTTCCGCC
CTAACCATCCTTGAAGTCGGTGGTGCGTTCGCGCATCGGTTCCAGGAGCTGATCGCCTTCGTTGGGCTCACA
ACACTGGTCATCACGGATCTGGACAGCGTGACGGTCAAGACGGACGCCGAGAAGGCCGCCGCGCAAGGCGCA
GGCGCTGAGGGCGCCGTTGACGGAGATGACGAGGACGAGGACGACGACCTGAAGCCCTTCGAGCTTGAAGAC
GACGACGAAGCAGAACCGAGTGGCAAGAAGAAGTCCAAGAAGCGTGGCAGCACCTGCCATGCACACGTGGAA
GGTGCCGTCACGTCCAACCAAACCCTCATCAGCTGGATCCCGAAGAAGCGGTCGATGGCAGAGCTCTGGGAA
GTCACGGCGGAGCAAAAGACGCTGTCGCTGGCTGAGGATTCCAGCGCTGGGGTTCGGGTAGCTTACCAGACC
AAGGTTTCGGTGACGGTGGGTGCGACGACATCACAGCTCTGCGGCCGCACACTTGAGGAGGCCTTTGGTCTT
GAGAACGCGGACTGGTGCCAGGCTGAGGCAAACCGGTCGGTCGGCCTCAAGCTCAAGCGCGCACCGAGCAGC
CCTGAAGAGCTGGCTGAGAAGTTACACGATAGGGTGGTCGGCAAGAACTTCGACAAGACCCGCTTTGCGCTG
GAGGTACTCGCAAGCGGGCCGCTCAATGGCTGGAAGGTTCCCGCGTACATCGCCGAGGGCTTGGCCTGGCTC
GAAGCCAAAGTGGCCCACGAGCTTGAGGCGGATGCTGCCATCGCCACCGAGGTCGCGACTATTGAGCCGACT
ACAGCCGATGTTGTCGCTATCATTGTTGACCCGGGGCAGACGGCATGA

Translation:

MKLQAYRLQNYRRLRDVVIELDDEISIFVGANNSGKTSAVQGLYSMLRGEVKKFELFDFSAALWAEIDAVGR
TPPGDEDAPKRLPSILLDLWFRVGEDDLATAMSLLPSTEWDGKCVGIRVAFEPRDAHELVWKFHELHEKANN
AAVALAAKRKAAGEQAVEAGAEDAAAVVADAGEYKPWPESLTKYLTKELSKEYTFRYYVLDERAFVGYQARE
ADYEPLPLGKEPGGAAILKSLVRVDFLRAQRHLDDPDAGSSDRAESLSRRLSRFYHRNLEKRGDDHAALKAL
DTSEKELNFHLKEVFNDTLTRLAKLGYPGVNNPEIVIRAALDPTTVLGQDAKVHYVIPGVASAQLPDSYNGL
GFKNLVYMVVELLDLHEQWKAEDDKRAPLHLVFIEEPEAHLHAQIQQVFIRNVLRLLEDANDHATLFHTQLV
ITTHSPHILYERGFSPIRYFRRVNDQLGHHTDVRNLSLFKTGASDAPAREFLQRYLKLTHCDLFFSDAVILV
EGNVERLLLPAMIELVAKRLRSSALTILEVGGAFAHRFQELIAFVGLTTLVITDLDSVTVKTDAEKAAAQGA
GAEGAVDGDDEDEDDDLKPFELEDDDEAEPSGKKKSKKRGSTCHAHVEGAVTSNQTLISWIPKKRSMAELWE
VTAEQKTLSLAEDSSAGVRVAYQTKVSVTVGATTSQLCGRTLEEAFGLENADWCQAEANRSVGLKLKRAPSS
PEELAEKLHDRVVGKNFDKTRFALEVLASGPLNGWKVPAYIAEGLAWLEAKVAHELEADAAIATEVATIEPT
TADVVAIIVDPGQTA*

AnnotationID:187 GeneID:177

AnnotatorUID: diggins

Modification Date/Time: 2006-01-25 06:06:06

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:357

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17065

Author/Investigator(s):

Title: CDD research

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: NCBI CD-177.htm

URL:

ReferenceID:17499

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:177

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

20840 gb|AAP84136.1| (AY273869) pathogenesis related protein [Pseudomonas aeruginosa] 807 99.99 99.99 0 4132.0

GC ORFID: `43179`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_RL009`	Glimmer Score:
Start: `4611691`	Stop: `4614114`
Length: `2424`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_RL009 807 Homolog: PA1939 / Pathogenicity-related / P.aeruginosa / PA01 (AAG05327) translation of RL009`	Homolog Bit Score `1596.0`
Other Homologs: `t_RL009 (ORF: GLIMMER)`
GC ORF Sequence
ATGAAGTTACAGGCATATCGGCTGCAGAACTACCGCCGGCTGCGCGATGTTGTCATCGAGCTCGATGACGAA ATTTCTATCTTTGTCGGTGCCAACAACAGCGGGAAGACATCCGCCGTCCAAGGCCTGTACTCAATGCTTCGC GGCGAAGTGAAGAAGTTCGAGCTCTTTGACTTCAGTGCGGCGCTGTGGGCCGAGATCGATGCGGTCGGCAGG ACGCCCCCTGGCGATGAGGATGCGCCCAAAAGGTTACCGTCCATACTCTTGGATCTCTGGTTCCGCGTCGGT GAAGACGACCTCGCCACTGCGATGTCGCTGCTGCCGAGCACTGAGTGGGACGGCAAGTGCGTCGGGATCCGG GTAGCGTTCGAGCCTCGGGATGCCCACGAGCTCGTCTGGAAGTTCCATGAACTACATGAGAAGGCCAACAAC GCAGCTGTCGCGCTTGCGGCCAAGCGCAAGGCCGCCGGGGAGCAAGCTGTGGAGGCGGGCGCGGAAGACGCG GCTGCGGTGGTGGCCGATGCCGGCGAGTACAAGCCTTGGCCAGAAAGCCTGACGAAGTACCTCACAAAGGAA CTGAGCAAGGAATACACCTTCCGCTACTACGTGCTCGATGAGCGGGCTTTTGTCGGCTATCAGGCAAGGGAG GCCGACTACGAGCCGCTACCCCTAGGCAAGGAGCCGGGCGGTGCAGCCATTCTCAAGTCGCTGGTGAGGGTC GACTTCCTGCGCGCGCAGCGGCACCTCGATGACCCAGATGCCGGTAGCTCTGATCGCGCAGAGAGCTTGTCG CGGCGTCTGAGCAGGTTCTATCACCGCAACCTGGAGAAGCGTGGCGACGACCATGCGGCTCTCAAGGCGCTA GATACCTCGGAGAAGGAGCTGAACTTCCACCTGAAGGAAGTCTTCAATGACACCCTCACGCGCCTGGCCAAG CTCGGCTATCCGGGCGTCAACAATCCGGAGATCGTGATTCGGGCGGCCTTGGATCCGACCACTGTCTTGGGG CAAGACGCCAAGGTTCACTACGTGATCCCGGGCGTAGCTTCCGCCCAACTGCCAGACAGCTACAATGGCCTG GGGTTCAAGAATCTGGTCTACATGGTGGTTGAGCTGCTCGACTTGCACGAGCAGTGGAAAGCCGAGGATGAC AAGCGAGCTCCGCTTCATTTGGTCTTCATTGAGGAGCCTGAGGCGCATCTGCACGCGCAGATCCAGCAGGTC TTCATCAGGAACGTTTTGCGCCTCCTTGAGGATGCTAACGATCACGCGACTTTGTTCCACACGCAGCTCGTC ATCACCACGCACTCCCCGCACATCCTCTATGAACGCGGATTCTCGCCCATTCGGTACTTCCGCCGCGTCAAC GACCAGTTGGGCCATCACACGGATGTGCGCAATCTGTCGCTATTCAAAACGGGCGCGTCCGACGCTCCAGCG CGCGAATTCCTGCAGCGGTATCTGAAGCTGACGCACTGCGATCTCTTTTTTTCCGACGCGGTGATATTGGTG GAAGGCAACGTCGAGCGTCTGCTCCTGCCTGCAATGATCGAGTTGGTGGCCAAGCGCCTGCGTTCTTCCGCC CTAACCATCCTTGAAGTCGGTGGTGCGTTCGCGCATCGGTTCCAGGAGCTGATCGCCTTCGTTGGGCTCACA ACACTGGTCATCACGGATCTGGACAGCGTGACGGTCAAGACGGACGCCGAGAAGGCCGCCGCGCAAGGCGCA GGCGCTGAGGGCGCCGTTGACGGAGATGACGAGGACGAGGACGACGACCTGAAGCCCTTCGAGCTTGAAGAC GACGACGAAGCAGAACCGAGTGGCAAGAAGAAGTCCAAGAAGCGTGGCAGCACCTGCCATGCACACGTGGAA GGTGCCGTCACGTCCAACCAAACCCTCATCAGCTGGATCCCGAAGAAGCGGTCGATGGCAGAGCTCTGGGAA GTCACGGCGGAGCAAAAGACGCTGTCGCTGGCTGAGGATTCCAGCGCTGGGGTTCGGGTAGCTTACCAGACC AAGGTTTCGGTGACGGTGGGTGCGACGACATCACAGCTCTGCGGCCGCACACTTGAGGAGGCCTTTGGTCTT GAGAACGCGGACTGGTGCCAGGCTGAGGCAAACCGGTCGGTCGGCCTCAAGCTCAAGCGCGCACCGAGCAGC CCTGAAGAGCTGGCTGAGAAGTTACACGATAGGGTGGTCGGCAAGAACTTCGACAAGACCCGCTTTGCGCTG GAGGTACTCGCAAGCGGGCCGCTCAATGGCTGGAAGGTTCCCGCGTACATCGCCGAGGGCTTGGCCTGGCTC GAAGCCAAAGTGGCCCACGAGCTTGAGGCGGATGCTGCCATCGCCACCGAGGTCGCGACTATTGAGCCGACT ACAGCCGATGTTGTCGCTATCATTGTTGACCCGGGGCAGACGGCATGA