ViewGene

Locus Name:
GeneID:
Location:

GeneID:1769
TrivialName: PA14_66600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66600
PAO1 Ortholog Locus:PA5038
Sequence Length:1107
Protein Length:368
Start: 5946536
Stop: 5945430
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08423.1|AE004917_2 (AE004917) 3-dehydroquinate synthase [Pseudomonas aeruginosa PAO1]
Identities = 366/368 (99%), Positives = 366/368 (99%)
Sequence:
ATGCGCACACTTCACGTCGATCTAGGCGAGCGTAGCTATCCCATTTACATCGGTGAAAACCTGCTGGGCGAC
GCCCGCTGGTTCGCGCCGCATATCGTCGGTCGCCGGGTCGCGGTGATCAGCAACGAAACGGTCGCTCCTCTC
TATCTGGAAACCCTGCTCAAGGCACTGCAAGGCCACGAGGTCACCCCTGTGGTGCTGCCCGACGGCGAGGCC
TACAAGCAGTGGGAAACCCTGCAACTGATCTTCGATGCCCTGCTGAAGGAGCGGCATGACCGCAAGACTACC
CTGATCGCCCTGGGCGGCGGCGTCATCGGTGACATGGCCGGTTTCGCCGCGGCCTGCTACCAGCGTGGGGTC
AACTTCATCCAGGTGCCGACCACCCTGTTGTCCCAGGTCGACTCCTCGGTGGGCGGCAAGACCGGGATCAAC
CATCCGTTGGGCAAGAACATGATCGGTGCGTTCTACCAGCCCCAGGCGGTGGTCATCGACACCGCGTCGCTG
AAGACGCTGCCGTCCCGCGAGCTGTCCGCCGGGCTGGCGGAGGTGATCAAGTACGGTTTCATTTGCGACGAA
CCGTTCATCACCTGGCTGGAAGAGCACATGGATGCCTTGCTGGCACTGGAGCCGACCGTTGTCACCGAGGCC
ATCGAGCGCTCTTGCGCGGCGAAGGCCCGCGTGGTGGGCGCCGACGAGCGCGAGTCGGGCGTGCGTGCCACG
CTGAACCTCGGCCATACCTTCGGTCACGCGATCGAGACCCAGCAAGGTTACGGCGTCTGGTTGCACGGCGAA
GCGGTAGGGGCGGGAACCGTGATGGCACTCGAGATGTCGCATCGGTTGGGTTGGCTGAGCGCCGCCGAGCGC
GATCGCGGTATCCGTCTGCTGCGCCGGGCTGGCCTGCCCGTGGTACCGCCGGCCGAGATGACGGCGGAAGAT
TTTATGGAACACATGGCCGTCGACAAGAAAGTGCTCGATGGCCGCCTGCGTCTGGTTTTGCTGCAAGGACTG
GGGAATGCCGTGGTCACCGGCGATTTTCCCCGTGAGATCTTGGACGCGACCCTGCGCACCGACTATCGGGCC
TTGGCCGACCAGCTTGGAGATGAATGA
Translation:
MRTLHVDLGERSYPIYIGENLLGDARWFAPHIVGRRVAVISNETVAPLYLETLLKALQGHEVTPVVLPDGEA
YKQWETLQLIFDALLKERHDRKTTLIALGGGVIGDMAGFAAACYQRGVNFIQVPTTLLSQVDSSVGGKTGIN
HPLGKNMIGAFYQPQAVVIDTASLKTLPSRELSAGLAEVIKYGFICDEPFITWLEEHMDALLALEPTVVTEA
IERSCAAKARVVGADERESGVRATLNLGHTFGHAIETQQGYGVWLHGEAVGAGTVMALEMSHRLGWLSAAER
DRGIRLLRRAGLPVVPPAEMTAEDFMEHMAVDKKVLDGRLRLVLLQGLGNAVVTGDFPREILDATLRTDYRA
LADQLGDE*
AnnotationID:1778GeneID:1769
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 10:10:43
Gene Name:aroB
Confidence Code:2
GeneProduct:3-dehydroquinate synthase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0337,pfam01761
Secondary Functional Category(ies):central intermediary metabolism
EC Number:4.6.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAO58553.1| (AE016874) 3-dehydroquinate synthase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 367

 Score =  582 bits (1499), Expect = e-165
 Identities = 284/365 (77%), Positives = 316/365 (86%)

>gb|AAN70643.1|AE016708_4 (AE016793) 3-dehydroquinate synthase [Pseudomonas putida KT2440]
          Length = 365

 Score =  577 bits (1488), Expect = e-164
 Identities = 288/365 (78%), Positives = 316/365 (86%)

>gb|AAL22348.1| (AE008860) dehydroquinate synthase [Salmonella typhimurium LT2]
          Length = 362

 Score =  404 bits (1039), Expect = e-112
 Identities = 212/352 (60%), Positives = 250/352 (71%), Gaps = 2/352 (0%)
Structural Features:
COG0337, AroB, 3-dehydroquinate synthetase [Amino acid transport and metabolism]
CD-Length = 360 residues, 100.0% aligned
Score =  497 bits (1282), Expect = 7e-142
Identities = 225/362 (62%), Positives = 266/362 (73%), Gaps = 4/362 (1%)

pfam01761, DHQ_synthase, 3-dehydroquinate synthase. 
CD-Length = 340 residues,  99.7% aligned
Score =  411 bits (1059), Expect = 5e-116
Identities = 181/340 (53%), Positives = 208/340 (61%), Gaps = 2/340 (0%)
Genomic Context:
Comment:
ReferenceID:3541
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20688
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35007
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1769_cdd.html
URL:
ReferenceID:35852
Author/Investigator(s): Han MA, Lee HS, Cheon CI, Min KH, Lee MS.
Title: Cloning and analysis of the aroB gene encoding dehydroquinate synthase from Corynebacterium glutamicum.
PubMed: 10907426
MedLine:
Source:
Can J Microbiol. 1999 Oct;45(10):885-90.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10907426
ReferenceID:35853
Author/Investigator(s): Barten R, Meyer TF.
Title: Cloning and characterisation of the Neisseria gonorrhoeae aroB gene.
PubMed: 9613570
MedLine:
Source:
Mol Gen Genet. 1998 Apr;258(1-2):34-44.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9613570
ReferenceID:35854
Author/Investigator(s): Bereswill S, Fassbinder F, Volzing C, Haas R, Reuter K, Ficner R, Kist M.
Title: Cloning and functional characterization of the genes encoding 3-dehydroquinate synthase (aroB) and tRNA-guanine transglycosylase (tgt) from Helicobacter pylori.
PubMed: 9403840
MedLine:
Source:
Med Microbiol Immunol (Berl). 1997 Oct;186(2-3):125-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9403840
Homologs By Global Alignment
Gene ID:1769

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3133 PA5038_tr translation of PA5038 368 99.45 99.45 0 1880.0
97057 gb|AAG08423.1|AE004917_2 (AE004917) 3-dehydroquinate synthase [Pseudomonas aeruginosa PAO1] 368 99.45 99.45 0 1880.0
97059 gb|AAN70643.1|AE016708_4 (AE016793) 3-dehydroquinate synthase [Pseudomonas putida KT2440] 368 78.26 85.86 3 1488.0
97058 gb|AAO58553.1| (AE016874) 3-dehydroquinate synthase [Pseudomonas syringae pv. tomato str. DC3000] 368 77.17 85.86 1 1496.0
97063 emb|CAD08128.1| (AL627281) 3-dehydroquinate synthase [Salmonella enterica subsp. enterica serovar Typhi] 370 57.56 68.64 10 1037.0
GC ORFID: 44771How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5038Glimmer Score:
Start: 5210219Stop: 5209113
Length: 1107
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5038 translation of PA5038Homolog Bit Score 728.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3296 (ORF: BLASTX 579.0), t_PA5038 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCACACTTCACGTCGATCTAGGCGAGCGTAGCTATCCCATTTACATCGGTGAAAACCTGCTGGGCGAC
GCCCGCTGGTTCGCGCCGCATATCGTCGGTCGCCGGGTCGCGGTGATCAGCAACGAAACGGTCGCTCCTCTC
TATCTGGAAACCCTGCTCAAGGCACTGCAAGGCCACGAGGTCACCCCTGTGGTGCTGCCCGACGGCGAGGCC
TACAAGCAGTGGGAAACCCTGCAACTGATCTTCGATGCCCTGCTGAAGGAGCGGCATGACCGCAAGACTACC
CTGATCGCCCTGGGCGGCGGCGTCATCGGTGACATGGCCGGTTTCGCCGCGGCCTGCTACCAGCGTGGGGTC
AACTTCATCCAGGTGCCGACCACCCTGTTGTCCCAGGTCGACTCCTCGGTGGGCGGCAAGACCGGGATCAAC
CATCCGTTGGGCAAGAACATGATCGGTGCGTTCTACCAGCCCCAGGCGGTGGTCATCGACACCGCGTCGCTG
AAGACGCTGCCGTCCCGCGAGCTGTCCGCCGGGCTGGCGGAGGTGATCAAGTACGGTTTCATTTGCGACGAA
CCGTTCATCACCTGGCTGGAAGAGCACATGGATGCCTTGCTGGCACTGGAGCCGACCGTTGTCACCGAGGCC
ATCGAGCGCTCTTGCGCGGCGAAGGCCCGCGTGGTGGGCGCCGACGAGCGCGAGTCGGGCGTGCGTGCCACG
CTGAACCTCGGCCATACCTTCGGTCACGCGATCGAGACCCAGCAAGGTTACGGCGTCTGGTTGCACGGCGAA
GCGGTAGGGGCGGGAACCGTGATGGCACTCGAGATGTCGCATCGGTTGGGTTGGCTGAGCGCCGCCGAGCGC
GATCGCGGTATCCGTCTGCTGCGCCGGGCTGGCCTGCCCGTGGTACCGCCGGCCGAGATGACGGCGGAAGAT
TTTATGGAACACATGGCCGTCGACAAGAAAGTGCTCGATGGCCGCCTGCGTCTGGTTTTGCTGCAAGGACTG
GGGAATGCCGTGGTCACCGGCGATTTTCCCCGTGAGATCTTGGACGCGACCCTGCGCACCGACTATCGGGCC
TTGGCCGACCAGCTTGGAGATGAATGA