ViewGene
Locus Name:
GeneID:
Location:

GeneID:1767
TrivialName: PA14_20380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20380
PAO1 Ortholog Locus:PA3378
Sequence Length:1101
Protein Length:366
Start: 1752884
Stop: 1753984
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06766.1|AE004759_13 (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 366/366 (100%), Positives = 366/366 (100%)
Sequence:
ATGTACGTAGCCGTCAAGGGTGGCGAGAAGGCCATCGACAACGCCCATCGCCTGCTGGCGCGCAAGCGCCGC
GGCGATACCGCGCTGCCGGAGCTGTCGGTGGAGCAGATCCGCCAGCAGATGCCACTGGCCGTGTCGCGGGTG
ATGACCGAAGGTTCGCTGTACGACGAGCAACTGGCGGCACTGGCGATCAAGCAGGCGGCCGGCGACCTGATG
GAAGCGATCTTCCTCCTCCGCGCCTACCGCACCACGCTGCCGCGCTTCGCCGCCAGCCTGCCGCTGGATACC
GCCGGGATGCGCCTGCAACGGCGGATCTCGGCGACCTACAAGGACCTGCCGGGCGGGCAACTGCTCGGTCCG
ACCTTCGACTATACCCATCGCCTGCTCGACTTCAGCCTGCTCGCCGAGGGCGACTACCCCGGCCCCGAAGTG
GAGCGGGGCGCGTCCCTGGAGCCTTGTCCGCGCGTGCTCGGCCTGCTCGACCGGGAAGGCCTGATGACGCCG
GAGTACGAACTGCCCGGCGCGGTGCCGGATATCACCCGCGAGCCGCTCGACTTCCCCACCGGCCGCGCCCAG
CGCCTGCAGGCCCTGGCCCGCGGCGACGAGGGCTTCCTTCTCGCCCTGGGCTATTCGACCCAGCGCGGCTAC
GGCCGCAACCATCCGTTTGCCGGGGAGATCCGCATCGGCGCCTGCGAGGTCTGGCTGGAGCCCGAGGAACTC
GGCTTCGCGGTGCCGGTGGGCGAGATCGAGGTCACCGAGTGCGAGATGGTCAACCAGTTCGTCGGTTCCCGC
GAGGAGCTGCCGCAATTCACCCGTGGCTACGGCCTGGCCTTCGGCTACGCCGAGCGCAAGGCGATGGGCATG
GCCCTGGTCGACCGCGCCCTGCGCGCCGAGGAATACGGCGAGGAGGTGGTGTCGCCGGCGCAGCAGGAAGAG
TTCGTCCTGATGCACTGCGACAACGTCGAGGCCGGTGGCTTCGTCTCGCACCTGAAGCTGCCGCACTACGTC
GATTTCCAGTCCGAGCTGGAGCTGATTCGCAAGCTGCGTCGTCCCGGCGTCGCCGAATCCGCGCAACCCACT
GTCCAGGAGAAGCGCGCATGA
Translation:
MYVAVKGGEKAIDNAHRLLARKRRGDTALPELSVEQIRQQMPLAVSRVMTEGSLYDEQLAALAIKQAAGDLM
EAIFLLRAYRTTLPRFAASLPLDTAGMRLQRRISATYKDLPGGQLLGPTFDYTHRLLDFSLLAEGDYPGPEV
ERGASLEPCPRVLGLLDREGLMTPEYELPGAVPDITREPLDFPTGRAQRLQALARGDEGFLLALGYSTQRGY
GRNHPFAGEIRIGACEVWLEPEELGFAVPVGEIEVTECEMVNQFVGSREELPQFTRGYGLAFGYAERKAMGM
ALVDRALRAEEYGEEVVSPAQQEEFVLMHCDNVEAGGFVSHLKLPHYVDFQSELELIRKLRRPGVAESAQPT
VQEKRA*
AnnotationID:1776GeneID:1767
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:04
Gene Name:phnI
Confidence Code:3
GeneProduct:putative phosphonate metabolism protein
Cell Localization:()
Synonyms:PA3378
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative phosphonate metabolism protein
Functional Category Confidence Code:5
COGs:pfam05861,COG3626
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56066.1| (AE016865) phosphonate metabolism protein PhnI [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 359

 Score =  578 bits (1490), Expect = e-164
 Identities = 283/350 (80%), Positives = 319/350 (91%)

>gb|AAN83529.1|AE016771_40 (AE016771) PhnI protein [Escherichia coli CFT073]
          Length = 356

 Score =  457 bits (1175), Expect = e-128
 Identities = 236/350 (67%), Positives = 270/350 (77%), Gaps = 1/350 (0%)

>gb|AAM84315.1|AE013674_11 (AE013674) phosphonate metabolism protein [Yersinia pestis KIM]
          Length = 394

 Score =  452 bits (1163), Expect = e-126
 Identities = 235/357 (65%), Positives = 269/357 (75%)






 
Structural Features:
pfam05861, PhnI, Bacterial phosphonate metabolism protein (PhnI). 
CD-Length = 355 residues, 100.0% aligned
Score =  578 bits (1492), Expect = 3e-166
Identities = 265/356 (74%), Positives = 294/356 (82%), Gaps = 2/356 (0%)

COG3626, PhnI, Uncharacterized enzyme of phosphonate metabolism 
[Inorganic ion transport and metabolism]
CD-Length = 367 residues, 100.0% aligned
Score =  604 bits (1558), Expect = 6e-174
Identities = 278/367 (75%), Positives = 303/367 (82%), Gaps = 1/367 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3537




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20684




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32184




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1767_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1767
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3131
                           PA3378_tr
                           translation of PA3378
                           366
                           99.99
                           99.99
                           0
                           1880.0
     

     
     
97021
                           gb|AAG06766.1|AE004759_13
                           (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           366
                           99.99
                           99.99
                           0
                           1880.0
     

     
     
97022
                           gb|AAO56066.1|
                           (AE016865) phosphonate metabolism protein PhnI [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           77.92
                           87.73
                           9
                           1490.0
     

     
     
97023
                           dbj|BAC46488.1|
                           (AP005939) phosphonate metabolism protein [Bradyrhizobium japonicum USDA 110]
                           369
                           66.66
                           79.13
                           5
                           1235.0
     

     
     
97026
                           gb|AAA24347.1|
                           (J05260) phnI protein [Escherichia coli]
                           368
                           66.03
                           74.72
                           16
                           1177.0
     

     






      

          
GC ORFID: 44769How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3378Glimmer Score: 

          
Start: 3201048Stop: 3199948

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3378 translation of PA3378Homolog Bit Score 728.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1222 (ORF: BLASTX 578.0), t_PA3378 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACGTAGCCGTCAAGGGTGGCGAGAAGGCCATCGACAACGCCCATCGCCTGCTGGCGCGCAAGCGCCGC 
GGCGATACCGCGCTGCCGGAGCTGTCGGTGGAGCAGATCCGCCAGCAGATGCCACTGGCCGTGTCGCGGGTG 
ATGACCGAAGGTTCGCTGTACGACGAGCAACTGGCGGCACTGGCGATCAAGCAGGCGGCCGGCGACCTGATG 
GAAGCGATCTTCCTCCTCCGCGCCTACCGCACCACGCTGCCGCGCTTCGCCGCCAGCCTGCCGCTGGATACC 
GCCGGGATGCGCCTGCAACGGCGGATCTCGGCGACCTACAAGGACCTGCCGGGCGGGCAACTGCTCGGTCCG 
ACCTTCGACTATACCCATCGCCTGCTCGACTTCAGCCTGCTCGCCGAGGGCGACTACCCCGGCCCCGAAGTG 
GAGCGGGGCGCGTCCCTGGAGCCTTGTCCGCGCGTGCTCGGCCTGCTCGACCGGGAAGGCCTGATGACGCCG 
GAGTACGAACTGCCCGGCGCGGTGCCGGATATCACCCGCGAGCCGCTCGACTTCCCCACCGGCCGCGCCCAG 
CGCCTGCAGGCCCTGGCCCGCGGCGACGAGGGCTTCCTTCTCGCCCTGGGCTATTCGACCCAGCGCGGCTAC 
GGCCGCAACCATCCGTTTGCCGGGGAGATCCGCATCGGCGCCTGCGAGGTCTGGCTGGAGCCCGAGGAACTC 
GGCTTCGCGGTGCCGGTGGGCGAGATCGAGGTCACCGAGTGCGAGATGGTCAACCAGTTCGTCGGTTCCCGC 
GAGGAGCTGCCGCAATTCACCCGTGGCTACGGCCTGGCCTTCGGCTACGCCGAGCGCAAGGCGATGGGCATG 
GCCCTGGTCGACCGCGCCCTGCGCGCCGAGGAATACGGCGAGGAGGTGGTGTCGCCGGCGCAGCAGGAAGAG 
TTCGTCCTGATGCACTGCGACAACGTCGAGGCCGGTGGCTTCGTCTCGCACCTGAAGCTGCCGCACTACGTC 
GATTTCCAGTCCGAGCTGGAGCTGATTCGCAAGCTGCGTCGTCCCGGCGTCGCCGAATCCGCGCAACCCACT 
GTCCAGGAGAAGCGCGCATGA