ViewGene
Locus Name:
GeneID:
Location:

GeneID:1763
TrivialName: PA14_34370
AnnotatorUID: danlee
Modification Date/Time:2006-06-27 18:06:21
LocusName:PA14_34370
PAO1 Ortholog Locus:PA2341
Sequence Length:1113
Protein Length:370
Start: 3059291
Stop: 3058179
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05729.1|AE004660_5 (AE004660) probable ATP-binding component of ABC maltose/mannitol transporter [Pseudomonas aeruginosa PAO1]
Identities = 369/370 (99%), Positives = 369/370 (99%)
Sequence:
atggctgatctcaagatccgcaacctgcagaaaggcttcgacggccaggccatcatcaagggcatcgacctc
gacgtccgcgaccgcgagttcgtggtcttcgtcggcccctccggctgcggcaagtcgaccctgctgcgcctg
atcgccggcctcgaagaggccagcggcggcagcatcgccctcgacggcacggacatcaccgacaccccgccg
gcgaaacgcgacctggcgatggtcttccagacctacgcgctgtacccgcacatgacggtgcgcaggaacctc
tccttcgccctcgacctggccggcgtcgacaagcgcgaggtcgccgccaaggtcgacgccgccgcacgcatc
ctcgaactgcaagcgctgctggagcgcaagccgcgccagctctccggcggccagcggcagcgagtggcgatc
ggccgggcgatcgtgcgcaacccgaagatattcctcttcgacgaaccgctgtccaacctcgacgccgccctg
cgcgtgcagatgcgcctggaactggcgcggctgcaccaggaactggcggcgaccatgatctacgtgacccac
gaccaggtcgaggcgatgaccctggcggacaaggtcgtggtgctcaacggcggacgcgtcgagcaggtcggc
tcgccgctggagctttaccaccatccggccaacctgttcgtcgccggcttcctcggcacgccgaagatgggc
ttcctgcgcggccatctcagccgcaatcagggcgagcgctgcgaggtcgccctcgaatgcggcgcgcgcgtc
ggcctgccgctatgcgccggcgagctggccaccggcagcccggtgaccctcggtatccgcccggaacacctg
aacatcgcccgcccgggccatgccttccagggcctgctgcgggtcgccgccgacgtcagcgagcgcctgggc
agcgacagcttctgccatgtccgcgccgactcgggggaaatgctcaccctgcgcgtgcgcggcgatttcgca
ccggactacggcgcccccctggagctgggcttcgatccggcgcactgccatctgttcgacagcaacggccag
gccctcgacaaacgactgcaacaggcggcctga
Translation:
MADLKIRNLQKGFDGQAIIKGIDLDVRDREFVVFVGPSGCGKSTLLRLIAGLEEASGGSIALDGTDITDTPP
AKRDLAMVFQTYALYPHMTVRRNLSFALDLAGVDKREVAAKVDAAARILELQALLERKPRQLSGGQRQRVAI
GRAIVRNPKIFLFDEPLSNLDAALRVQMRLELARLHQELAATMIYVTHDQVEAMTLADKVVVLNGGRVEQVG
SPLELYHHPANLFVAGFLGTPKMGFLRGHLSRNQGERCEVALECGARVGLPLCAGELATGSPVTLGIRPEHL
NIARPGHAFQGLLRVAADVSERLGSDSFCHVRADSGEMLTLRVRGDFAPDYGAPLELGFDPAHCHLFDSNGQ
ALDKRLQQAA*
AnnotationID:1772GeneID:1763
AnnotatorUID: danlee
Modification Date/Time: 2005-09-26 15:03:15
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC maltose/mannitol transporter
Cell Localization:()
Synonyms:PA2341, mtlk
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:sorbitol/mannitol transport ATP-binding transport protein
Functional Category Confidence Code:5
COGs:COG3839,COG3842,COG1118
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC04471.1| (AF007800) MtlK [Pseudomonas fluorescens]
          Length = 367

 Score =  545 bits (1405), Expect = e-154
 Identities = 280/370 (75%), Positives = 312/370 (84%), Gaps = 3/370 (0%)

>dbj|BAC48489.1| (AP005946) ABC transporter ATP-binding protein [Bradyrhizobium
           japonicum USDA 110]
          Length = 335

 Score =  392 bits (1008), Expect = e-108
 Identities = 210/363 (57%), Positives = 254/363 (69%), Gaps = 31/363 (8%)

>gb|AAL43581.1| (AE009206) ABC transporter, nucleotide binding/ATPase protein
           [maltose/maltodextrin] [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 370

 Score =  369 bits (947), Expect = e-101
 Identities = 194/366 (53%), Positives = 248/366 (67%), Gaps = 5/366 (1%)








 
Structural Features:
COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues, 100.0% aligned
Score =  431 bits (1109), Expect = 8e-122
Identities = 187/358 (52%), Positives = 242/358 (67%), Gaps = 20/358 (5%)

COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  98.9% aligned
Score =  316 bits (810), Expect = 3e-87
Identities = 151/357 (42%), Positives = 204/357 (57%), Gaps = 11/357 (3%)

COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component 
[Inorganic ion transport and metabolism]
CD-Length = 345 residues,  83.5% aligned
Score =  238 bits (608), Expect = 1e-63
Identities = 127/299 (42%), Positives = 175/299 (58%), Gaps = 16/299 (5%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3529




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20676




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32457




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1763_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1763
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3118
                           PA2341_tr
                           translation of PA2341
                           370
                           99.72
                           99.72
                           0
                           1881.0
     

     
     
96244
                           gb|AAG05729.1|AE004660_5
                           (AE004660) probable ATP-binding component of ABC maltose/mannitol transporter [Pseudomonas aeruginosa PAO1]
                           370
                           99.72
                           99.72
                           0
                           1881.0
     

     
     
96245
                           gb|AAC04471.1|
                           (AF007800) MtlK [Pseudomonas fluorescens]
                           370
                           75.67
                           84.32
                           3
                           1408.0
     

     
     
96246
                           dbj|BAC48489.1|
                           (AP005946) ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]
                           371
                           56.60
                           68.46
                           37
                           1024.0
     

     
     
96249
                           emb|CAC48405.1|
                           (AL603642) probable lactose transport ATP-binding protein [Sinorhizobium meliloti]
                           372
                           54.56
                           71.50
                           16
                           997.0
     

     






      

          
GC ORFID: 44765How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2341Glimmer Score: 

          
Start: 1894625Stop: 1895737

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2341 translation of PA2341Homolog Bit Score 729.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3068 (ORF: BLASTX 540.0), psyr_15may02_Scaffold3_revised_gene4722 (ORF: BLASTX 347.0), psyr_15may02_Scaffold3_revised_gene4421 (ORF: BLASTX 320.0), t_PA3187 (ORF: BLASTX 309.0), psyr_15may02_Scaffold4_revised_gene5887 (ORF: BLASTX 276.0), psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 263.0), t_PA0603 (ORF: BLASTX 255.0), t_PA0206 (ORF: BLASTX 233.0), t_PA3607 (ORF: BLASTX 232.0), psyr_15may02_Scaffold7_revised_gene6963 (ORF: BLASTX 229.0), t_PA0326 (ORF: BLASTX 219.0), t_PA2341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGATCTCAAGATCCGCAACCTGCAGAAAGGCTTCGACGGCCAGGCCATCATCAAGGGCATCGACCTC 
GACGTCCGCGACCGCGAGTTCGTGGTCTTCGTCGGCCCCTCCGGCTGCGGCAAGTCGACCCTGCTGCGCCTG 
ATCGCCGGCCTCGAAGAGGCCAGCGGCGGCAGCATCGCCCTCGACGGCACGGACATCACCGACACCCCGCCG 
GCGAAACGCGACCTGGCGATGGTCTTCCAGACCTACGCGCTGTACCCGCACATGACGGTGCGCAGGAACCTC 
TCCTTCGCCCTCGACCTGGCCGGCGTCGACAAGCGCGAGGTCGCCGCCAAGGTCGACGCCGCCGCACGCATC 
CTCGAACTGCAAGCGCTGCTGGAGCGCAAGCCGCGCCAGCTCTCCGGCGGCCAGCGGCAGCGAGTGGCGATC 
GGCCGGGCGATCGTGCGCAACCCGAAGATATTCCTCTTCGACGAACCGCTGTCCAACCTCGACGCCGCCCTG 
CGCGTGCAGATGCGCCTGGAACTGGCGCGGCTGCACCAGGAACTGGCGGCGACCATGATCTACGTGACCCAC 
GACCAGGTCGAGGCGATGACCCTGGCGGACAAGGTCGTGGTGCTCAACGGCGGACGCGTCGAGCAGGTCGGC 
TCGCCGCTGGAGCTTTACCACCATCCGGCCAACCTGTTCGTCGCCGGCTTCCTCGGCACGCCGAAGATGGGC 
TTCCTGCGCGGCCATCTCAGCCGCAATCAGGGCGAGCGCTGCGAGGTCGCCCTCGAATGCGGCGCGCGCGTC 
GGCCTGCCGCTATGCGCCGGCGAGCTGGCCACCGGCAGCCCGGTGACCCTCGGTATCCGCCCGGAACACCTG 
AACATCGCCCGCCCGGGCCATGCCTTCCAGGGCCTGCTGCGGGTCGCCGCCGACGTCAGCGAGCGCCTGGGC 
AGCGACAGCTTCTGCCATGTCCGCGCCGACTCGGGGGAAATGCTCACCCTGCGCGTGCGCGGCGATTTCGCA 
CCGGACTACGGCGCCCCCCTGGAGCTGGGCTTCGATCCGGCGCACTGCCATCTGTTCGACAGCAACGGCCAG 
GCCCTCGACAAACGACTGCAACAGGCGGCCTGA