ViewGene
Locus Name:
GeneID:
Location:

GeneID:1762
TrivialName: PA14_36130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36130
PAO1 Ortholog Locus:PA2209
Sequence Length:1098
Protein Length:365
Start: 3220256
Stop: 3221353
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05597.1|AE004647_6 (AE004647) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 363/365 (99%), Positives = 364/365 (99%)
Sequence:
ATGCCTTATTTTGAGTGGACGCTTATCGGTGCGCTTCGCACACTCCGCTCTACCCATAACAACAATGACAAC
CAGAGGTCCTCCATGCGTACCGCATATGCGCGCTCCGTCCCCTCCTTCCTGGCCGCTTGCGCCCTGCTCTGC
TGCACCGCCCTGCCCGCCCTGGCGGCTGCCTGGAAACCCGAAGAGAACCTGGAGATCGTCGTCGCCGGCGGT
CCCGGTGGCGGCACCGACCAACTCGCCCGCCTGGTCCAGTCGGCGATCAGCCAGAACAAGCTGCTCGAGGTC
AACACCGTGGTGCTGAACAAGGGCGGCGGCAACGGCGCCGAAGCCTTCCTCGACCTGAAGCTGGCCAAGGGC
AACGCGCACAAGCTGGTGATCGGCACCAACAATGTCTACCTGTTGCCGCTGGTGGCCCGGCTGGGCTACCAA
TGGACCGACCTGACGCCGGTGGCGGCGGTGGCCGAGGACGACTTCATCCTCTGGACCTACCAGGCGGCGCCG
TGGGCGGACGCCGCGGCGTTCCTCGCCGATCTGAAGAAGGACGCGGCAGGCATGCGCTTCGGCGGCAGCCAG
TCGAAGGACGTCGACCAGACTCTAAGCCTGCTGCTCGGCAAGCAGGTCGGCGGCAAGCTGACCTACATCCCC
TTCAAGAGCGGCAGCGAGGCGTCCATCCAGTTGGCCGGCAGGCACATCGCCGCCAACCTCAACAACCCGGCG
GAAAGCCTCAGCCAGTGGCGCGGCGGCCAGGTCCGGCCGCTCTGCGTGTTCAGCCACGAGCGCATGATCTAC
ACCGCCAAGGTCGCTGCCGAGCAGTCCTGGGCGGACATCCCCACCTGCCACGAACAGGGCCTGGGCATTGAC
CAGTACCGCTTCCCGCGCACCGTGTTCCTGCCCGGCGGAGTCAGCGACGAGCAGCGCGCCTTCTACGTCGAG
TTGATGCGCAAGGTCAGCCAGACCGCCGAGTTCAGGGACTATGTCGAACGCTCGGCGCTGGCGCCGACCTTC
CTCGCTGGCGAGGACCTGGTGAGCTACATCGAGAAGGACCGCCAGCGCGTCATCCCGCTGTTCCAGGAAGCC
GGCTGGCTTCGCCAGTAA
Translation:
MPYFEWTLIGALRTLRSTHNNNDNQRSSMRTAYARSVPSFLAACALLCCTALPALAAAWKPEENLEIVVAGG
PGGGTDQLARLVQSAISQNKLLEVNTVVLNKGGGNGAEAFLDLKLAKGNAHKLVIGTNNVYLLPLVARLGYQ
WTDLTPVAAVAEDDFILWTYQAAPWADAAAFLADLKKDAAGMRFGGSQSKDVDQTLSLLLGKQVGGKLTYIP
FKSGSEASIQLAGRHIAANLNNPAESLSQWRGGQVRPLCVFSHERMIYTAKVAAEQSWADIPTCHEQGLGID
QYRFPRTVFLPGGVSDEQRAFYVELMRKVSQTAEFRDYVERSALAPTFLAGEDLVSYIEKDRQRVIPLFQEA
GWLRQ*
AnnotationID:1771GeneID:1762
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 19:07:53
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2209
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3527




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20674




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32547




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1762_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1762
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3117
                           PA2209_tr
                           translation of PA2209
                           365
                           99.45
                           99.72
                           0
                           1883.0
     

     
     
96240
                           gb|AAG05597.1|AE004647_6
                           (AE004647) hypothetical protein PA2209 [Pseudomonas aeruginosa PAO1]
                           365
                           99.45
                           99.72
                           0
                           1883.0
     

     
     
96241
                           dbj|BAC49636.1|
                           (AP005951) blr4371 [Bradyrhizobium japonicum USDA 110]
                           366
                           43.44
                           63.38
                           37
                           828.0
     

     
     
96242
                           dbj|BAC51299.1|
                           (AP005957) bll6034 [Bradyrhizobium japonicum USDA 110]
                           365
                           41.91
                           61.09
                           37
                           783.0
     

     
     
96243
                           emb|CAC49863.1|
                           (AL603647) conserved hypothetical exported protein [Sinorhizobium meliloti]
                           365
                           41.64
                           59.72
                           37
                           773.0
     

     






      

          
GC ORFID: 44764How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2209Glimmer Score: 

          
Start: 1733660Stop: 1732563

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2209 translation of PA2209Homolog Bit Score 729.0

          
Other Homologs:  t_PA2209 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTTATTTTGAGTGGACGCTTATCGGTGCGCTTCGCACACTCCGCTCTACCCATAACAACAATGACAAC 
CAGAGGTCCTCCATGCGTACCGCATATGCGCGCTCCGTCCCCTCCTTCCTGGCCGCTTGCGCCCTGCTCTGC 
TGCACCGCCCTGCCCGCCCTGGCGGCTGCCTGGAAACCCGAAGAGAACCTGGAGATCGTCGTCGCCGGCGGT 
CCCGGTGGCGGCACCGACCAACTCGCCCGCCTGGTCCAGTCGGCGATCAGCCAGAACAAGCTGCTCGAGGTC 
AACACCGTGGTGCTGAACAAGGGCGGCGGCAACGGCGCCGAAGCCTTCCTCGACCTGAAGCTGGCCAAGGGC 
AACGCGCACAAGCTGGTGATCGGCACCAACAATGTCTACCTGTTGCCGCTGGTGGCCCGGCTGGGCTACCAA 
TGGACCGACCTGACGCCGGTGGCGGCGGTGGCCGAGGACGACTTCATCCTCTGGACCTACCAGGCGGCGCCG 
TGGGCGGACGCCGCGGCGTTCCTCGCCGATCTGAAGAAGGACGCGGCAGGCATGCGCTTCGGCGGCAGCCAG 
TCGAAGGACGTCGACCAGACTCTAAGCCTGCTGCTCGGCAAGCAGGTCGGCGGCAAGCTGACCTACATCCCC 
TTCAAGAGCGGCAGCGAGGCGTCCATCCAGTTGGCCGGCAGGCACATCGCCGCCAACCTCAACAACCCGGCG 
GAAAGCCTCAGCCAGTGGCGCGGCGGCCAGGTCCGGCCGCTCTGCGTGTTCAGCCACGAGCGCATGATCTAC 
ACCGCCAAGGTCGCTGCCGAGCAGTCCTGGGCGGACATCCCCACCTGCCACGAACAGGGCCTGGGCATTGAC 
CAGTACCGCTTCCCGCGCACCGTGTTCCTGCCCGGCGGAGTCAGCGACGAGCAGCGCGCCTTCTACGTCGAG 
TTGATGCGCAAGGTCAGCCAGACCGCCGAGTTCAGGGACTATGTCGAACGCTCGGCGCTGGCGCCGACCTTC 
CTCGCTGGCGAGGACCTGGTGAGCTACATCGAGAAGGACCGCCAGCGCGTCATCCCGCTGTTCCAGGAAGCC 
GGCTGGCTTCGCCAGTAA