ViewGene

Locus Name:
GeneID:
Location:

GeneID:1760
TrivialName: PA14_12710
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12710
PAO1 Ortholog Locus:PA3954
Sequence Length:1095
Protein Length:364
Start: 1090856
Stop: 1089762
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07341.1|AE004813_8 (AE004813) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 363/364 (99%), Positives = 363/364 (99%)
Sequence:
ATGAGCCAAGAGCAACAGCCGATCCACTTCGCCTACTGGGTCCCCAACGTCAGCGGCGGCCTGGTGGTGAGC
AAGATCGAGCAGCGCACCAGCTGGGACATCGACTACAACCGCAAGCTGGCCCAGTTGGCGGAACGCAACGGC
TTCGACTACGCCCTCTCGCAGATCCGCTTCACCGCCGGCTACGGCGCCGAGTACCAGCACGAGTCGGTGGCC
ATCAGCCACGCCCTGCTGGCGGCCACCGAGAAGCTCAAGGTGATCGCGGCGATCCTGCCTGGCCCCTGGCAT
CCTGCGGTCGTGGCCAAGCAACTGGCGACGATCGACCAACTGACCAATGGCCGGGTCGCGGTGAACATCGTC
AGCGGCTGGTTCAAGGGAGAGTTCACCGGCATCGGCGAACCCTGGCTGGAGCACGACGAACGCTATCGGCGC
TCCGAAGAGTTCATCCGCGTGCTGAAAGGCATCTGGACCGAGGAAAACTTCACCTTCAAGGGCGATTTCTAT
CGTTTCCACGACTACACCCTGAAACCCAAGCCGATCCAGCAGCCGCACCCGGAAATCTTCCAGGGCGGCAGC
TCGCGGGCGGCGCGGGACATGGCCTCGCGCGTGTCCGACTGGTACTTCACCAACGGCAACAGCATCGACGGC
ATCCGCGCCCAGGTCGAGGACATCCGCGCCAAGGCGGCGGCCAACGGCCATTCGGTCAAGGTCGGAGTGAAC
GCCTTCATCATTGCCCGCGACACCGAGGAGGAAGCGCGGGCGGTGCTCGACGAGATCATCGCCAAGGCCGAC
TACGAGGCGGTGAACGCCTTCGGCGACGCGGTGAAACAGGCCGGCAAGGCCTCGCCGGAGGGCGATGGCAAC
TGGGCCAAATCCACCTTCGAAGACCTGGTGCAATACAACGACGGCTTCAAGACCAACCTGATCGGCACGCCA
CGGCAGATCGCCGAACGCATCGTCGCGCTGAAGGCGGCCGGGGTCGACCTGGTGCTGTCGGCCTTCCTGCAC
TTCCACGAAGAAGTGGAGTATTTCGGCAAGCACGTGTTGCCGCTGGTCCGCGAACTGGAGCAGGCCCAGGCC
CGCGAAGCGGCCTGA
Translation:
MSQEQQPIHFAYWVPNVSGGLVVSKIEQRTSWDIDYNRKLAQLAERNGFDYALSQIRFTAGYGAEYQHESVA
ISHALLAATEKLKVIAAILPGPWHPAVVAKQLATIDQLTNGRVAVNIVSGWFKGEFTGIGEPWLEHDERYRR
SEEFIRVLKGIWTEENFTFKGDFYRFHDYTLKPKPIQQPHPEIFQGGSSRAARDMASRVSDWYFTNGNSIDG
IRAQVEDIRAKAAANGHSVKVGVNAFIIARDTEEEARAVLDEIIAKADYEAVNAFGDAVKQAGKASPEGDGN
WAKSTFEDLVQYNDGFKTNLIGTPRQIAERIVALKAAGVDLVLSAFLHFHEEVEYFGKHVLPLVRELEQAQA
REAA*
AnnotationID:1769GeneID:1760
AnnotatorUID: urbach
Modification Date/Time: 2004-05-21 14:02:38
Gene Name:
Confidence Code:3
GeneProduct:possible Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase
Cell Localization:()
Synonyms:PA3954
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2141, pfam00296
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|11849 COG2141, COG2141, Coenzyme F420-dependent N5,N10-methylene
tetrahydromethanopterin reductase and related
flavin-dependent oxidoreductases [Energy production and conversion]
Length = 336
Score =  215 bits (547), Expect = 2e-56
Identities
Genomic Context:
Comment:
ReferenceID:3523
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20670
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1760

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3115 PA3954_tr translation of PA3954 364 99.72 99.72 0 1885.0
96195 gb|AAG07341.1|AE004813_8 (AE004813) hypothetical protein PA3954 [Pseudomonas aeruginosa PAO1] 364 99.72 99.72 0 1885.0
96196 gb|AAO56094.1| (AE016865) bacterial luciferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 368 84.78 90.76 6 1646.0
96197 gb|AAN68373.1|AE016470_2 (AE016784) sulfonate monooxygenase MsuD, putative [Pseudomonas putida KT2440] 366 84.15 90.16 5 1633.0
96198 gb|AAL46212.1| (AE008973) monooxygenase [Agrobacterium tumefaciens str. C58 (U. Washington)] 368 76.08 85.86 5 1490.0
GC ORFID: 44762How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3954Glimmer Score:
Start: 3863082Stop: 3864176
Length: 1095
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3954 translation of PA3954Homolog Bit Score 730.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene1245 (ORF: BLASTX 637.0), t_PA3954 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCCAAGAGCAACAGCCGATCCACTTCGCCTACTGGGTCCCCAACGTCAGCGGCGGCCTGGTGGTGAGC
AAGATCGAGCAGCGCACCAGCTGGGACATCGACTACAACCGCAAGCTGGCCCAGTTGGCGGAACGCAACGGC
TTCGACTACGCCCTCTCGCAGATCCGCTTCACCGCCGGCTACGGCGCCGAGTACCAGCACGAGTCGGTGGCC
ATCAGCCACGCCCTGCTGGCGGCCACCGAGAAGCTCAAGGTGATCGCGGCGATCCTGCCTGGCCCCTGGCAT
CCTGCGGTCGTGGCCAAGCAACTGGCGACGATCGACCAACTGACCAATGGCCGGGTCGCGGTGAACATCGTC
AGCGGCTGGTTCAAGGGAGAGTTCACCGGCATCGGCGAACCCTGGCTGGAGCACGACGAACGCTATCGGCGC
TCCGAAGAGTTCATCCGCGTGCTGAAAGGCATCTGGACCGAGGAAAACTTCACCTTCAAGGGCGATTTCTAT
CGTTTCCACGACTACACCCTGAAACCCAAGCCGATCCAGCAGCCGCACCCGGAAATCTTCCAGGGCGGCAGC
TCGCGGGCGGCGCGGGACATGGCCTCGCGCGTGTCCGACTGGTACTTCACCAACGGCAACAGCATCGACGGC
ATCCGCGCCCAGGTCGAGGACATCCGCGCCAAGGCGGCGGCCAACGGCCATTCGGTCAAGGTCGGAGTGAAC
GCCTTCATCATTGCCCGCGACACCGAGGAGGAAGCGCGGGCGGTGCTCGACGAGATCATCGCCAAGGCCGAC
TACGAGGCGGTGAACGCCTTCGGCGACGCGGTGAAACAGGCCGGCAAGGCCTCGCCGGAGGGCGATGGCAAC
TGGGCCAAATCCACCTTCGAAGACCTGGTGCAATACAACGACGGCTTCAAGACCAACCTGATCGGCACGCCA
CGGCAGATCGCCGAACGCATCGTCGCGCTGAAGGCGGCCGGGGTCGACCTGGTGCTGTCGGCCTTCCTGCAC
TTCCACGAAGAAGTGGAGTATTTCGGCAAGCACGTGTTGCCGCTGGTCCGCGAACTGGAGCAGGCCCAGGCC
CGCGAAGCGGCCTGA