ViewGene
Locus Name:
GeneID:
Location:

GeneID:1759
TrivialName: PA14_31820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31820
PAO1 Ortholog Locus:PA2531
Sequence Length:1125
Protein Length:374
Start: 2768843
Stop: 2767719
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05919.1|AE004681_1 (AE004681) probable aminotransferase [Pseudomonas aeruginosa PAO1]
Identities = 369/374 (98%), Positives = 372/374 (99%)
Sequence:
ATGCCCGCTTTGAGTCGTCGTTCGTTCGTGACCCTGACCGCCCTGGCCTCCAGCAGCATCCTGCTGAGCCCG
CGAGCCTTCGCCGGGAGCGGCGCGACAAGCGCCGCCGGGAAGCCGCAAGAGACCTTCCTGGATTTCAACGAA
AGCCCCTACGGCCCCTCCGCCAAGGCCAGGGCCGCCATGCAGCAGGCGGCCGCGCTCTGCGGCCGCTACGAC
TACGACGCGCAGGACGCCCTGGTCGGCCTGTTCGCCAAACAGAACGGCATCCCCGCCGAATCCGTGCATGCC
TACTGCGGCTCGCGCCAGCCGCTGCAATACGCCGTCGCGGCGTTCACCGGCAAGGAGCGCAGCCTGGTCATG
GCCGATCCCTCCTACGACTCCGTGCTCGGCGCCGCCCAGGCCCAGGGGGCGAAGGTCGCTGCCGTGCCGCTG
GACGCCGAGGCGGCCCACGACATCGAGCGCATGCTCGCCGCCGCGCAACGCGACGCCGGGCTGATCTATATC
TGCAACCCGAACAACCCGACCGGCACCCTCACCCCGCACGAGCGGATCGTCAGGGCGATCGAACGCAAGCCC
GAGCGCAGCGTGGTGCTGGTCGACGAGGCGTATATCCATTTTTCCGACGCACCCAGCGTCGTTGGCCTGGCC
GTCCAGCGCCAGGATGTGCTGGTCCTGCGTACCTTCTCGAAACTCTACGGGATGGCCGGCGCCCGGCTCGGC
CTGGCCATCGGGCATCCGCAGCTGCTGGCGCGGCTGGAGCGCTTCGGCGGCCACAACGTGGTGCCCTCGCCG
ACCGCCCACGCCGGGCTGGAAAGCCTGCGTGACGACGATCTGGTGCCACGGCGCAAGCAGCAGAACGCAGAG
GTCCGCGAGCGCACCATCGCCTGGCTGCGCCAGCAGGGCTTCCGCTGCACCGCCTCGCAGTCCAACTGTTTC
ATGGTGGATATGCGCCGTCCCGCCGAGCTGGTCATCGCCGAACTGGAGAAACAGCGGGTGCACGTCGGCCGC
CCGTGGGCCTCCTGGCCCAACTGGGTCCGCGTGACGGTAGGCAGCGAGGAAGAGATGCAGGCGTTCCGGAGC
GCCTTCGCCAGCGTCAGCCGGCGCCACCAGGTCGCCATGCGCTAG
Translation:
MPALSRRSFVTLTALASSSILLSPRAFAGSGATSAAGKPQETFLDFNESPYGPSAKARAAMQQAAALCGRYD
YDAQDALVGLFAKQNGIPAESVHAYCGSRQPLQYAVAAFTGKERSLVMADPSYDSVLGAAQAQGAKVAAVPL
DAEAAHDIERMLAAAQRDAGLIYICNPNNPTGTLTPHERIVRAIERKPERSVVLVDEAYIHFSDAPSVVGLA
VQRQDVLVLRTFSKLYGMAGARLGLAIGHPQLLARLERFGGHNVVPSPTAHAGLESLRDDDLVPRRKQQNAE
VRERTIAWLRQQGFRCTASQSNCFMVDMRRPAELVIAELEKQRVHVGRPWASWPNWVRVTVGSEEEMQAFRS
AFASVSRRHQVAMR*
AnnotationID:1768GeneID:1759
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 10:10:07
Gene Name:
Confidence Code:3
GeneProduct:putative aminotransferase
Cell Localization:()
Synonyms:hisC
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:putative histidinol-phosphate aminotransferase
Functional Category Confidence Code:5
COGs:COG0079,COG0436
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM40864.1| (AE012257) aminotransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 420

 Score =  315 bits (806), Expect = 4e-85
 Identities = 176/372 (47%), Positives = 230/372 (61%), Gaps = 10/372 (2%)

>gb|AAK23055.1| (AE005784) histidinol-phosphate aminotransferase, putative
           [Caulobacter crescentus CB15]
          Length = 409

 Score =  297 bits (760), Expect = 8e-80
 Identities = 168/380 (44%), Positives = 232/380 (61%), Gaps = 18/380 (4%)

>gb|AAM38266.1| (AE011988) histidinol-phosphate aminotransferase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 400

 Score =  289 bits (739), Expect = 2e-77
 Identities = 167/371 (45%), Positives = 228/371 (61%), Gaps = 10/371 (2%)








 
Structural Features:
COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase 
and cobyric acid decarboxylase 
[Amino acid transport and metabolism]
CD-Length = 356 residues,  96.6% aligned
Score =  264 bits (677), Expect = 9e-72
Identities = 116/346 (33%), Positives = 177/346 (51%), Gaps = 7/346 (2%)

COG0436, COG0436, Aspartate/tyrosine/aromatic aminotransferase 
[Amino acid transport and metabolism]
CD-Length = 393 residues,  88.3% aligned
Score =  117 bits (294), Expect = 2e-27
Identities = 83/347 (23%), Positives = 146/347 (42%), Gaps = 34/347 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3521




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20668




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33091




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1759_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1759
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3114
                           PA2531_tr
                           translation of PA2531
                           374
                           98.66
                           99.46
                           0
                           1885.0
     

     
     
96187
                           gb|AAG05919.1|AE004681_1
                           (AE004681) probable aminotransferase [Pseudomonas aeruginosa PAO1]
                           374
                           98.66
                           99.46
                           0
                           1885.0
     

     
     
96188
                           gb|AAK73354.1|AF389866_1
                           (AF389866) periplasmic aminotransferase [Pseudomonas aeruginosa]
                           374
                           98.66
                           99.46
                           0
                           1885.0
     

     
     
96193
                           gb|AAM36494.1|
                           (AE011794) aminotransferase [Xanthomonas axonopodis pv. citri str. 306]
                           389
                           42.67
                           58.86
                           30
                           749.0
     

     
     
96194
                           gb|AAL65284.1|
                           (AY271621) QbsB [Pseudomonas fluorescens]
                           378
                           42.32
                           56.61
                           19
                           728.0
     

     






      

          
GC ORFID: 44761How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2531Glimmer Score: 

          
Start: 2185083Stop: 2186207

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2531 translation of PA2531Homolog Bit Score 730.0

          
Other Homologs:  t_PA2531 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGCTTTGAGTCGTCGTTCGTTCGTGACCCTGACCGCCCTGGCCTCCAGCAGCATCCTGCTGAGCCCG 
CGAGCCTTCGCCGGGAGCGGCGCGACAAGCGCCGCCGGGAAGCCGCAAGAGACCTTCCTGGATTTCAACGAA 
AGCCCCTACGGCCCCTCCGCCAAGGCCAGGGCCGCCATGCAGCAGGCGGCCGCGCTCTGCGGCCGCTACGAC 
TACGACGCGCAGGACGCCCTGGTCGGCCTGTTCGCCAAACAGAACGGCATCCCCGCCGAATCCGTGCATGCC 
TACTGCGGCTCGCGCCAGCCGCTGCAATACGCCGTCGCGGCGTTCACCGGCAAGGAGCGCAGCCTGGTCATG 
GCCGATCCCTCCTACGACTCCGTGCTCGGCGCCGCCCAGGCCCAGGGGGCGAAGGTCGCTGCCGTGCCGCTG 
GACGCCGAGGCGGCCCACGACATCGAGCGCATGCTCGCCGCCGCGCAACGCGACGCCGGGCTGATCTATATC 
TGCAACCCGAACAACCCGACCGGCACCCTCACCCCGCACGAGCGGATCGTCAGGGCGATCGAACGCAAGCCC 
GAGCGCAGCGTGGTGCTGGTCGACGAGGCGTATATCCATTTTTCCGACGCACCCAGCGTCGTTGGCCTGGCC 
GTCCAGCGCCAGGATGTGCTGGTCCTGCGTACCTTCTCGAAACTCTACGGGATGGCCGGCGCCCGGCTCGGC 
CTGGCCATCGGGCATCCGCAGCTGCTGGCGCGGCTGGAGCGCTTCGGCGGCCACAACGTGGTGCCCTCGCCG 
ACCGCCCACGCCGGGCTGGAAAGCCTGCGTGACGACGATCTGGTGCCACGGCGCAAGCAGCAGAACGCAGAG 
GTCCGCGAGCGCACCATCGCCTGGCTGCGCCAGCAGGGCTTCCGCTGCACCGCCTCGCAGTCCAACTGTTTC 
ATGGTGGATATGCGCCGTCCCGCCGAGCTGGTCATCGCCGAACTGGAGAAACAGCGGGTGCACGTCGGCCGC 
CCGTGGGCCTCCTGGCCCAACTGGGTCCGCGTGACGGTAGGCAGCGAGGAAGAGATGCAGGCGTTCCGGAGC 
GCCTTCGCCAGCGTCAGCCGGCGCCACCAGGTCGCCATGCGCTAG