ViewGene
Locus Name:
GeneID:
Location:

GeneID:1758
TrivialName: PA14_57650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57650
PAO1 Ortholog Locus:PA4438
Sequence Length:1095
Protein Length:364
Start: 5135482
Stop: 5134388
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07826.1|AE004858_4 (AE004858) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 364/364 (100%), Positives = 364/364 (100%)
Sequence:
ATGACGCCCCTCGAGCGCTACCAGGCCGATCTCCAACGCCCCGATTTCTTCCACGATGCCGCACAGGCGAAT
GCCGTGAAGCATCTGCAACGCCTCTACGATGACCTGGTCGCCGCCGACCACGCCAAGCCCGGCCTGTTCGGC
AAGCTGCTCGGCAGGAAGTCCGGCGGGCCGGTGAAGGGCCTGTATTTCTGGGGCGGCGTCGGCCGTGGCAAG
ACCTACCTGGTGGACACTTTCTTCGAGTCGCTGCCGTTCGAGCAGAAGGTGCGCACGCACTTCCACCGCTTC
ATGAAGCGGGTACACGAAGAACTGAAGACCCTCAAGGGCGAGAAGAACCCGCTGACCATCATCGGCAAGCGC
TTCGCCGACGAGGCGCGGGTGATCTGCTTCGACGAGTTCTTCGTCTCCGACATCACCGATGCGATGATCCTC
GCCACCCTGCTGGAAGAGCTGTTCAAGAACGGCGTGAGCCTGGTGGCGACCTCCAACATCGTGCCGGACGGC
CTGTACAAGGACGGCCTGCAACGCGCCCGTTTCCTGCCGGCGATCGCCCTGCTCAAGGAGCATACCGAGATC
GTCAACGTCGATAGCGGCGTCGACTATCGCCTGCGCGCGCTGGAGCAGGCCGAGCTGTTCCACTGGCCGCTC
AGCGAACAGGTCGAGGAGGAGATGGCGCGCAGCTTCAAGGCCCTGACCCCGGACTGCGCCAAGGCCCAGCGC
GACGAGGCGCTGATGATCGAGAACCGCGAGATCCGCGCGCGCCTGACCTGCGACGACGTGGCCTGGTTCGAA
TTCCGTGAGCTGTGCGACGGCCCGCGCAGCCAGAACGACTACATCGAGCTGGCGAAGATTTTCCACGCCGTG
CTGATCTCCAACGTCGAGCAGATGGGCGTCACCAAGGACGACATGGCGCGGCGTTTCATCAACCTGGTGGAT
GAGTTCTACGACCGCAGCGTCAAGCTGATCATCTCCGCCGAGGTCGAGCTAAAGGATCTCTACAGCGGCGGC
CGGCTGGAGTTCGAATTCCAGCGCACCCTCAGTCGTCTGCTGGAAATGCAGTCCCACGAATACCTGACGCGT
CCGCACCGGCCCTGA
Translation:
MTPLERYQADLQRPDFFHDAAQANAVKHLQRLYDDLVAADHAKPGLFGKLLGRKSGGPVKGLYFWGGVGRGK
TYLVDTFFESLPFEQKVRTHFHRFMKRVHEELKTLKGEKNPLTIIGKRFADEARVICFDEFFVSDITDAMIL
ATLLEELFKNGVSLVATSNIVPDGLYKDGLQRARFLPAIALLKEHTEIVNVDSGVDYRLRALEQAELFHWPL
SEQVEEEMARSFKALTPDCAKAQRDEALMIENREIRARLTCDDVAWFEFRELCDGPRSQNDYIELAKIFHAV
LISNVEQMGVTKDDMARRFINLVDEFYDRSVKLIISAEVELKDLYSGGRLEFEFQRTLSRLLEMQSHEYLTR
PHRP*
AnnotationID:1767GeneID:1758
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 21:09:02
Gene Name:
Confidence Code:3
GeneProduct:putative ATPase
Cell Localization:()
Synonyms:PA4438
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03969,COG1485, KOG2383
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57877.1| (AE016871) ATPase, putative [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 364

 Score =  621 bits (1602), Expect = e-177
 Identities = 302/364 (82%), Positives = 336/364 (92%)

>gb|AAO09116.1|AE016799_14 (AE016799) Predicted ATPase [Vibrio vulnificus CMCP6]
          Length = 367

 Score =  388 bits (997), Expect = e-107
 Identities = 208/367 (56%), Positives = 263/367 (71%), Gaps = 7/367 (1%)







 
Structural Features:
pfam03969, AFG1_ATPase, AFG1-like ATPase. 
CD-Length = 360 residues, 100.0% aligned
Score =  508 bits (1309), Expect = 9e-145
Identities = 212/362 (58%), Positives = 253/362 (69%), Gaps = 3/362 (0%)

COG1485, Predicted ATPase
CD-Length = 367 residues,  97.8% aligned
Score =  495 bits (1275), Expect = 8e-141
Identities = 202/363 (55%), Positives = 241/363 (66%), Gaps = 4/363 (1%)

KOG2383, Predicted ATPase
CD-Length = 467 residues,  83.5% aligned
Score =  288 bits (738), Expect = 2e-78
Identities = 146/392 (37%), Positives = 201/392 (51%), Gaps = 49/392 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3519




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20666




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31477




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1758_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1758
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3113
                           PA4438_tr
                           translation of PA4438
                           364
                           99.99
                           99.99
                           0
                           1886.0
     

     
     
96148
                           gb|AAG07826.1|AE004858_4
                           (AE004858) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           364
                           99.99
                           99.99
                           0
                           1886.0
     

     
     
96149
                           gb|AAO57877.1|
                           (AE016871) ATPase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           364
                           82.96
                           92.30
                           0
                           1602.0
     

     
     
96150
                           gb|AAN66936.1|AE016322_3
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           364
                           81.04
                           90.93
                           0
                           1581.0
     

     
     
96151
                           gb|AAN56916.1|AE015826_1
                           (AE015826) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           373
                           58.71
                           73.19
                           12
                           1111.0
     

     






      

          
GC ORFID: 44760How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4438Glimmer Score: 

          
Start: 4399161Stop: 4398067

          
Length: 1095


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4438 translation of PA4438Homolog Bit Score 731.0

          
Other Homologs:  psyr_15may02_Scaffold12_revised_gene2028 (ORF: BLASTX 619.0), t_PA4438 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCCCTCGAGCGCTACCAGGCCGATCTCCAACGCCCCGATTTCTTCCACGATGCCGCACAGGCGAAT 
GCCGTGAAGCATCTGCAACGCCTCTACGATGACCTGGTCGCCGCCGACCACGCCAAGCCCGGCCTGTTCGGC 
AAGCTGCTCGGCAGGAAGTCCGGCGGGCCGGTGAAGGGCCTGTATTTCTGGGGCGGCGTCGGCCGTGGCAAG 
ACCTACCTGGTGGACACTTTCTTCGAGTCGCTGCCGTTCGAGCAGAAGGTGCGCACGCACTTCCACCGCTTC 
ATGAAGCGGGTACACGAAGAACTGAAGACCCTCAAGGGCGAGAAGAACCCGCTGACCATCATCGGCAAGCGC 
TTCGCCGACGAGGCGCGGGTGATCTGCTTCGACGAGTTCTTCGTCTCCGACATCACCGATGCGATGATCCTC 
GCCACCCTGCTGGAAGAGCTGTTCAAGAACGGCGTGAGCCTGGTGGCGACCTCCAACATCGTGCCGGACGGC 
CTGTACAAGGACGGCCTGCAACGCGCCCGTTTCCTGCCGGCGATCGCCCTGCTCAAGGAGCATACCGAGATC 
GTCAACGTCGATAGCGGCGTCGACTATCGCCTGCGCGCGCTGGAGCAGGCCGAGCTGTTCCACTGGCCGCTC 
AGCGAACAGGTCGAGGAGGAGATGGCGCGCAGCTTCAAGGCCCTGACCCCGGACTGCGCCAAGGCCCAGCGC 
GACGAGGCGCTGATGATCGAGAACCGCGAGATCCGCGCGCGCCTGACCTGCGACGACGTGGCCTGGTTCGAA 
TTCCGTGAGCTGTGCGACGGCCCGCGCAGCCAGAACGACTACATCGAGCTGGCGAAGATTTTCCACGCCGTG 
CTGATCTCCAACGTCGAGCAGATGGGCGTCACCAAGGACGACATGGCGCGGCGTTTCATCAACCTGGTGGAT 
GAGTTCTACGACCGCAGCGTCAAGCTGATCATCTCCGCCGAGGTCGAGCTAAAGGATCTCTACAGCGGCGGC 
CGGCTGGAGTTCGAATTCCAGCGCACCCTCAGTCGTCTGCTGGAAATGCAGTCCCACGAATACCTGACGCGT 
CCGCACCGGCCCTGA