ViewGene
Locus Name:
GeneID:
Location:

GeneID:1756
TrivialName: PA14_18860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18860
PAO1 Ortholog Locus:PA3515
Sequence Length:1074
Protein Length:357
Start: 1626303
Stop: 1627376
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06903.1|AE004772_1 (AE004772) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/357 (100%), Positives = 357/357 (100%)
Sequence:
ATGACAAAGGCTAACGAGATCGAAACCGCGAAGGTCAAGCAGTTTTCAGCGCGGATCATGGAGGACTACGGC
AATACCCTGCGCGGCGCGATGCTCTACATCGGCGACCGCCTGGGGCTGTTCAAGGCGCTCGCCCATGGCCAA
TGGGTGACCCTGGAAGAGCTGGCGCAGCAGACCGGCTACACCACCCGCTACCTGCGCGAATGGCTGGGCAGC
ATGGTCACCGGCAACTACCTGGCCTACGATCCGCAGAGCAGGAGCTATCGGTTGCCGGCCGAGTTCGTCCCG
GTGCTCGCCGACGAGGACTCGCCTTATTTCGCCGGCGGGATCATCCAGTTGAGCGTGCCCTTCGTGAGCATG
GCGCCGAAGATCATCGAGGCCTTCCGCTGCGGCGGCGGTTGCCCCGAGGAATCCTTCCCGCTGGAAACCTGG
GAAGGCATGGAGCGCATGACCATGCCCTGGTACAAGCACTTCCTCGTGCAGCACTGGATTCCTTCGCTGGAT
GGCGTCAAGGAAAAGCTCCAGGCGGGTGGCAGCGTGCTCGATTTCGGCTGCGGCAGCGGGCTGGCCGCGATC
ATGATGGCCAAGGCGTTCCCCGAAGCCCAGGTCTATGGCTGTGACTTCCACGCGCCGTCCATCGAACGCGCG
CGGGCGAACGCCGAGGCTGCGGGGGTCGGCGACCGGGTGCGCTTCGAGGTCAGCGATTCCGATGCGCTGGCG
GGCAAGAAGTTCGACTTCGTCACGACCTTCGTGGTCATCCACGACGCGACCGACCCGCAGCAGATGATGAAG
GACCTGCGCGAGTCGACCGCCGACGATGGGACCTACCTGATGGTGGAACTCAACCTGTCGCAGGAACTGCAC
GAGAACATGAACCTGTTCGGTCGCGTGATGTACCCGCAGAGCACGCTGTATTGCATGACCTGTTCGCTGTCC
CACGGCGGCGAGGGCCTCGGCGCCTTCATGGGCGAGGACCGCGCGCGGCAGATGGCCGAGGCCGCCGGCTTC
AGTCGCTTCCGCAAGGTGCCTTCGGAGTGGCCGCCGCTGCCGGCGCTGTTCGAACTGCGACCCTGA
Translation:
MTKANEIETAKVKQFSARIMEDYGNTLRGAMLYIGDRLGLFKALAHGQWVTLEELAQQTGYTTRYLREWLGS
MVTGNYLAYDPQSRSYRLPAEFVPVLADEDSPYFAGGIIQLSVPFVSMAPKIIEAFRCGGGCPEESFPLETW
EGMERMTMPWYKHFLVQHWIPSLDGVKEKLQAGGSVLDFGCGSGLAAIMMAKAFPEAQVYGCDFHAPSIERA
RANAEAAGVGDRVRFEVSDSDALAGKKFDFVTTFVVIHDATDPQQMMKDLRESTADDGTYLMVELNLSQELH
ENMNLFGRVMYPQSTLYCMTCSLSHGGEGLGAFMGEDRARQMAEAAGFSRFRKVPSEWPPLPALFELRP*
AnnotationID:1765GeneID:1756
AnnotatorUID: diggins
Modification Date/Time: 2005-04-19 13:01:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3515
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3515




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20662




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32049




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1756_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1756
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3110
                           PA3515_tr
                           translation of PA3515
                           357
                           99.99
                           99.99
                           0
                           1888.0
     

     
     
96135
                           gb|AAG06903.1|AE004772_1
                           (AE004772) hypothetical protein PA3515 [Pseudomonas aeruginosa PAO1]
                           357
                           99.99
                           99.99
                           0
                           1888.0
     

     






      

          
GC ORFID: 44758How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3515Glimmer Score: 

          
Start: 3327631Stop: 3326558

          
Length: 1074


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3515 translation of PA3515Homolog Bit Score 731.0

          
Other Homologs:  t_PA3515 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAAAGGCTAACGAGATCGAAACCGCGAAGGTCAAGCAGTTTTCAGCGCGGATCATGGAGGACTACGGC 
AATACCCTGCGCGGCGCGATGCTCTACATCGGCGACCGCCTGGGGCTGTTCAAGGCGCTCGCCCATGGCCAA 
TGGGTGACCCTGGAAGAGCTGGCGCAGCAGACCGGCTACACCACCCGCTACCTGCGCGAATGGCTGGGCAGC 
ATGGTCACCGGCAACTACCTGGCCTACGATCCGCAGAGCAGGAGCTATCGGTTGCCGGCCGAGTTCGTCCCG 
GTGCTCGCCGACGAGGACTCGCCTTATTTCGCCGGCGGGATCATCCAGTTGAGCGTGCCCTTCGTGAGCATG 
GCGCCGAAGATCATCGAGGCCTTCCGCTGCGGCGGCGGTTGCCCCGAGGAATCCTTCCCGCTGGAAACCTGG 
GAAGGCATGGAGCGCATGACCATGCCCTGGTACAAGCACTTCCTCGTGCAGCACTGGATTCCTTCGCTGGAT 
GGCGTCAAGGAAAAGCTCCAGGCGGGTGGCAGCGTGCTCGATTTCGGCTGCGGCAGCGGGCTGGCCGCGATC 
ATGATGGCCAAGGCGTTCCCCGAAGCCCAGGTCTATGGCTGTGACTTCCACGCGCCGTCCATCGAACGCGCG 
CGGGCGAACGCCGAGGCTGCGGGGGTCGGCGACCGGGTGCGCTTCGAGGTCAGCGATTCCGATGCGCTGGCG 
GGCAAGAAGTTCGACTTCGTCACGACCTTCGTGGTCATCCACGACGCGACCGACCCGCAGCAGATGATGAAG 
GACCTGCGCGAGTCGACCGCCGACGATGGGACCTACCTGATGGTGGAACTCAACCTGTCGCAGGAACTGCAC 
GAGAACATGAACCTGTTCGGTCGCGTGATGTACCCGCAGAGCACGCTGTATTGCATGACCTGTTCGCTGTCC 
CACGGCGGCGAGGGCCTCGGCGCCTTCATGGGCGAGGACCGCGCGCGGCAGATGGCCGAGGCCGCCGGCTTC 
AGTCGCTTCCGCAAGGTGCCTTCGGAGTGGCCGCCGCTGCCGGCGCTGTTCGAACTGCGACCCTGA