ViewGene
Locus Name:
GeneID:
Location:

GeneID:1755
TrivialName: PA14_22680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22680
PAO1 Ortholog Locus:PA3211
Sequence Length:1146
Protein Length:381
Start: 1973492
Stop: 1972347
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06599.1|AE004744_14 (AE004744) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 378/381 (99%), Positives = 378/381 (99%)
Sequence:
ATGACGACACAGCCGCAACCCGGCCACGTGAGCCTGGATAGCTCCACCCAGCCCGCCCGCGTCAGAGCCATA
GGTGATTGGACGCTCGCCCACTACACGGCTCTGGAGCGCGAGGTGACGCGCCTGCGCAGCGAAGTGGCGGGC
AACGCCAGCTTCGACCTGAGCCAACTGGGCGCCCTGGATACCGCCGGCGCCGCCCTGCTCGCCGAATTGCTC
GGCGCCGAGCGCCTGGCCGACCTCGCCGAGCTGGAGCCCGGCCTGCCGCGCGAGCGCCAGGCCCTGCTGAAG
ACCGTCGGCCACGCCCTGCACGACTTCTGCGAGCCGGAGAAACCCAAGCCGCCGACCACCGCCATCGAACTG
CTGGCTCGCATCGGTTGTGCCATGGAGACCTTCTGGCTGCACCTCAAGGCACTCCTCGGCTTCATCGGCCTG
ACCCTGGAGACCCTGTTCCGCAGCCTGGTCCGCCCGGCCAGTTGGCGGGTCACGCCGCTGGTGGCGAACATC
GAGAAGAGCGGCCTGGACGCGGTGCCGATCATCGCCCTGCTGACCTTCCTGGTCGGCGCGGTGATCGCCTTC
CTCGGCGCCACGGTGCTGGCCAACTTCGGCGCGACCATCTACACGGTCAACCTGGTGGTGTTCTCCTTCCTC
CGCGAGTTCGCCGTGCTGCTCACCGCGATCCTCATGGCCGGCCGCACCGCCAGCGCCTTCACCGCGCAGATC
GGTTCGATGAAGGCCAACGAGGAGATCGACGCGATCCGCGCCCTCGGCCTCAACCCCATCGAGCTGCTAGTG
CTGCCGCGGGTGCTGGCGCTGCTGGTATCGCTGCCGATGCTGACCTTCGTCGGCATGCTCTGCGGCATCGTC
GGCGGCATGACCGTCTGCGCCTGGACCCTGGACATCCCGCCGGCGATGTTCCTGTCGATCATGGAGGACGGA
ATCGGCGTACAGCATTTCCTGGTCGGTATCAGCAAGGCCCCGCTGTTCGCCTTCCTGATCGCCGTGATCGGC
TGCCTGGAAGGCTTCAAGGTCAGCGGCAGCGCCCAGTCGGTGGGCGAGCACACCACCACCAGCGTGGTCCAC
TCGATCTTCGTGGTGATCCTGCTCGACGCCCTCGCCGCGCTGTTCTTCATGGAGATGGGCTGGTGA
Translation:
MTTQPQPGHVSLDSSTQPARVRAIGDWTLAHYTALEREVTRLRSEVAGNASFDLSQLGALDTAGAALLAELL
GAERLADLAELEPGLPRERQALLKTVGHALHDFCEPEKPKPPTTAIELLARIGCAMETFWLHLKALLGFIGL
TLETLFRSLVRPASWRVTPLVANIEKSGLDAVPIIALLTFLVGAVIAFLGATVLANFGATIYTVNLVVFSFL
REFAVLLTAILMAGRTASAFTAQIGSMKANEEIDAIRALGLNPIELLVLPRVLALLVSLPMLTFVGMLCGIV
GGMTVCAWTLDIPPAMFLSIMEDGIGVQHFLVGISKAPLFAFLIAVIGCLEGFKVSGSAQSVGEHTTTSVVH
SIFVVILLDALAALFFMEMGW*
AnnotationID:1764GeneID:1755
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:31
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:yrbE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0767
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65776.1|AE016203_9 (AE016774) ABC transporter, permease protein, putative [Pseudomonas
           putida KT2440]
          Length = 377

 Score =  493 bits (1270), Expect = e-139
 Identities = 259/371 (69%), Positives = 300/371 (80%), Gaps = 3/371 (0%)

>gb|AAM38413.1| (AE012007) ABC transporter permease [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 370

 Score =  337 bits (865), Expect = 5e-92
 Identities = 196/378 (51%), Positives = 259/378 (68%), Gaps = 10/378 (2%)

>gb|AAO28427.1| (AE012555) ABC transporter permease [Xylella fastidiosa Temecula1]
          Length = 372

 Score =  310 bits (794), Expect = 9e-84
 Identities = 174/375 (46%), Positives = 252/375 (67%), Gaps = 14/375 (3%)








 
Structural Features:
COG0767, Ttg2B, ABC-type transport system involved in resistance 
to organic solvents, permease component 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 267 residues, 100.0% aligned
Score =  253 bits (648), Expect = 3e-68
Identities = 112/272 (41%), Positives = 156/272 (57%), Gaps = 5/272 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20660




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32334




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1755_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1755
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3109
                           PA3211_tr
                           translation of PA3211
                           381
                           99.21
                           99.21
                           0
                           1888.0
     

     
     
96127
                           gb|AAG06599.1|AE004744_14
                           (AE004744) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           381
                           99.21
                           99.21
                           0
                           1888.0
     

     
     
96128
                           gb|AAN65776.1|AE016203_9
                           (AE016774) ABC transporter, permease protein, putative [Pseudomonas putida KT2440]
                           381
                           68.50
                           79.26
                           4
                           1272.0
     

     
     
96130
                           gb|AAM39951.1|
                           (AE012161) ABC transporter permease [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           381
                           51.70
                           68.24
                           11
                           870.0
     

     
     
96129
                           gb|AAM38413.1|
                           (AE012007) ABC transporter permease [Xanthomonas axonopodis pv. citri str. 306]
                           385
                           50.90
                           67.27
                           19
                           878.0
     

     






      

          
GC ORFID: 44757How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3211Glimmer Score: 

          
Start: 2980439Stop: 2981584

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3211 translation of PA3211Homolog Bit Score 731.0

          
Other Homologs:  t_PA3211 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACACAGCCGCAACCCGGCCACGTGAGCCTGGATAGCTCCACCCAGCCCGCCCGCGTCAGAGCCATA 
GGTGATTGGACGCTCGCCCACTACACGGCTCTGGAGCGCGAGGTGACGCGCCTGCGCAGCGAAGTGGCGGGC 
AACGCCAGCTTCGACCTGAGCCAACTGGGCGCCCTGGATACCGCCGGCGCCGCCCTGCTCGCCGAATTGCTC 
GGCGCCGAGCGCCTGGCCGACCTCGCCGAGCTGGAGCCCGGCCTGCCGCGCGAGCGCCAGGCCCTGCTGAAG 
ACCGTCGGCCACGCCCTGCACGACTTCTGCGAGCCGGAGAAACCCAAGCCGCCGACCACCGCCATCGAACTG 
CTGGCTCGCATCGGTTGTGCCATGGAGACCTTCTGGCTGCACCTCAAGGCACTCCTCGGCTTCATCGGCCTG 
ACCCTGGAGACCCTGTTCCGCAGCCTGGTCCGCCCGGCCAGTTGGCGGGTCACGCCGCTGGTGGCGAACATC 
GAGAAGAGCGGCCTGGACGCGGTGCCGATCATCGCCCTGCTGACCTTCCTGGTCGGCGCGGTGATCGCCTTC 
CTCGGCGCCACGGTGCTGGCCAACTTCGGCGCGACCATCTACACGGTCAACCTGGTGGTGTTCTCCTTCCTC 
CGCGAGTTCGCCGTGCTGCTCACCGCGATCCTCATGGCCGGCCGCACCGCCAGCGCCTTCACCGCGCAGATC 
GGTTCGATGAAGGCCAACGAGGAGATCGACGCGATCCGCGCCCTCGGCCTCAACCCCATCGAGCTGCTAGTG 
CTGCCGCGGGTGCTGGCGCTGCTGGTATCGCTGCCGATGCTGACCTTCGTCGGCATGCTCTGCGGCATCGTC 
GGCGGCATGACCGTCTGCGCCTGGACCCTGGACATCCCGCCGGCGATGTTCCTGTCGATCATGGAGGACGGA 
ATCGGCGTACAGCATTTCCTGGTCGGTATCAGCAAGGCCCCGCTGTTCGCCTTCCTGATCGCCGTGATCGGC 
TGCCTGGAAGGCTTCAAGGTCAGCGGCAGCGCCCAGTCGGTGGGCGAGCACACCACCACCAGCGTGGTCCAC 
TCGATCTTCGTGGTGATCCTGCTCGACGCCCTCGCCGCGCTGTTCTTCATGGAGATGGGCTGGTGA