ViewGene
Locus Name:
GeneID:
Location:

GeneID:1752
TrivialName: PA14_07860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07860
PAO1 Ortholog Locus:PA0603
Sequence Length:1110
Protein Length:369
Start: 677604
Stop: 678713
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03992.1|AE004496_8 (AE004496) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 369/369 (100%), Positives = 369/369 (100%)
Sequence:
ATGGCCGAGACTCAAGGCGGCGATGTACTGGTCAGCTTCCGTGGCGTGCAGAAGAGCTACGACGGCGAGACC
CTCATCGTGAAGGATCTCAACCTGGACATTCGCAAGGGCGAATTCCTCACCCTGCTCGGCCCCTCCGGGTCC
GGCAAGACCACCAGCCTGATGATGCTGGCCGGTTTCGAAACCCCCACCGCCGGCGAAATCCTCCTGGCCGGT
CGCTCGATCAACAATGTCCCTCCGCACAAGCGCGACATCGGCATGGTGTTCCAGAACTATGCGCTGTTCCCG
CACATGACCGTGGCCGAGAACCTGGCCTTTCCCCTCAGCGTCCGCGGCATGAGCAAGACCGACGTGAAGGAA
AGGGTCAAGCGCGCGTTGTCGATGGTCCAGCTCGACGCCTTCGCCGGGCGTTATCCGGCGCAACTTTCCGGT
GGCCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGGTCTTCGAGCCGCAACTGGTGCTGATGGACGAGCCC
CTGGGAGCGCTGGACAAGCAACTTCGCGAGCACATGCAGATGGAAATCAAGCATCTGCACCAGCGCCTCGGC
GTCACCGTGGTCTACGTCACCCACGACCAGGGCGAGGCGCTGACCATGTCCGACCGGGTGGCGGTGTTCCAC
CAGGGCGAAATCCAGCAGATCGAGCCGCCGCGCAATCTCTACGAGCAGCCGCGCAACACCTTCGTGGCCAAC
TTCATCGGTGAGAACAACCGTCTATCCGGGCAGCTTCTCAGTTGCGACGGCGAGCGCTGCGTGGTCGGACTG
CCGCGCGGCGAGAAGGTCGAGGCGCTGGCGGTCAACGTCGGCCAGCCGGGCGAGCCGGTGACCTTGTCGATC
CGCCCCGAGCGGGTGCGCCTGAACGGTGCCAGCGAGTCTTGCGTCAACCGTTTCTCCGGCCGCGTGGCCGAG
TTCGTCTACCTGGGCGACCACGTGCGTGTGCGCCTGGAGGTCTGCGGCCGCGACGACTTCTTCGTCAAGCAG
CCGATCGCCGAGCTGGACCCGACGCTGAGCGTCGGTGATGTGGTTCCGCTGGGCTGGCAGGTCGAGCATGTG
AGGGCGCTCGACCCTCTGCCGGCGGCGTGA
Translation:
MAETQGGDVLVSFRGVQKSYDGETLIVKDLNLDIRKGEFLTLLGPSGSGKTTSLMMLAGFETPTAGEILLAG
RSINNVPPHKRDIGMVFQNYALFPHMTVAENLAFPLSVRGMSKTDVKERVKRALSMVQLDAFAGRYPAQLSG
GQQQRVALARALVFEPQLVLMDEPLGALDKQLREHMQMEIKHLHQRLGVTVVYVTHDQGEALTMSDRVAVFH
QGEIQQIEPPRNLYEQPRNTFVANFIGENNRLSGQLLSCDGERCVVGLPRGEKVEALAVNVGQPGEPVTLSI
RPERVRLNGASESCVNRFSGRVAEFVYLGDHVRVRLEVCGRDDFFVKQPIAELDPTLSVGDVVPLGWQVEHV
RALDPLPAA*
AnnotationID:1761GeneID:1752
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 12:12:17
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA0603
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative polyamine ABC transporter, ATP-binding protein
Functional Category Confidence Code:5
COGs:COG3842,COG3839,cd00267
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54104.1| (AE016857) polyamine ABC transporter, ATP-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 374

 Score =  655 bits (1690), Expect = 0.0
 Identities = 327/359 (91%), Positives = 343/359 (95%)

>gb|AAN66041.1|AE016233_7 (AE016775) polyamine ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 374

 Score =  648 bits (1671), Expect = 0.0
 Identities = 323/363 (88%), Positives = 340/363 (93%)

>gb|AAM84959.1|AE013742_1 (AE013742) ATP hydrolase of ABC transporter [Yersinia pestis KIM]
          Length = 371

 Score =  427 bits (1098), Expect = e-119
 Identities = 215/354 (60%), Positives = 267/354 (75%), Gaps = 1/354 (0%)








 
Structural Features:
COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components 
[Amino acid transport and metabolism]
CD-Length = 352 residues,  98.9% aligned
Score =  396 bits (1018), Expect = 3e-111
Identities = 176/357 (49%), Positives = 223/357 (62%), Gaps = 10/357 (2%)

COG3839, MalK, ABC-type sugar transport systems, ATPase components 
[Carbohydrate transport and metabolism]
CD-Length = 338 residues,  98.8% aligned
Score =  334 bits (859), Expect = 6e-93
Identities = 154/357 (43%), Positives = 209/357 (58%), Gaps = 25/357 (7%)

cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter nucleotide-binding domain
CD-Length = 217 residues, 100.0% aligned
Score =  225 bits (574), Expect = 8e-60
Identities = 92/219 (42%), Positives = 137/219 (62%), Gaps = 5/219 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3507




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20654




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33897




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1752_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1752
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3074
                           PA0603_tr
                           translation of PA0603
                           369
                           99.99
                           99.99
                           0
                           1890.0
     

     
     
94648
                           gb|AAG03992.1|AE004496_8
                           (AE004496) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           369
                           99.99
                           99.99
                           0
                           1890.0
     

     
     
94649
                           gb|AAO54104.1|
                           (AE016857) polyamine ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           374
                           87.96
                           92.51
                           5
                           1686.0
     

     
     
94650
                           gb|AAN66041.1|AE016233_7
                           (AE016775) polyamine ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           374
                           86.89
                           91.97
                           5
                           1671.0
     

     
     
94653
                           dbj|BAC51909.1|
                           (AP005959) ABC transporter ATP-binding protein [Bradyrhizobium japonicum USDA 110]
                           377
                           59.94
                           72.94
                           16
                           1093.0
     

     






      

          
GC ORFID: 44754How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0603Glimmer Score: 

          
Start: 6478947Stop: 6480056

          
Length: 1110


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0603 translation of PA0603Homolog Bit Score 732.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2134 (ORF: BLASTX 652.0), psyr_15may02_Scaffold7_revised_gene6963 (ORF: BLASTX 305.0), t_PA3607 (ORF: BLASTX 303.0), t_PA0206 (ORF: BLASTX 295.0), t_PA0302 (ORF: BLASTX 270.0), psyr_15may02_Scaffold7_revised_gene6993 (ORF: BLASTX 269.0), psyr_15may02_Scaffold6_revised_gene6513 (ORF: BLASTX 265.0), t_PA0326 (ORF: BLASTX 259.0), t_PA2341 (ORF: BLASTX 255.0), psyr_15may02_Scaffold2_revised_gene3068 (ORF: BLASTX 246.0), t_PA3254 (ORF: BLASTX 238.0), psyr_15may02_Scaffold16_revised_gene2680 (ORF: BLASTX 238.0), t_PA3187 (ORF: BLASTX 229.0), psyr_15may02_Scaffold5_revised_gene6124 (ORF: BLASTX 226.0), t_PA3538 (ORF: BLASTX 221.0), psyr_15may02_Scaffold4_revised_gene5887 (ORF: BLASTX 212.0), t_PA3891 (ORF: BLASTX 174.0), t_PA0603 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCGAGACTCAAGGCGGCGATGTACTGGTCAGCTTCCGTGGCGTGCAGAAGAGCTACGACGGCGAGACC 
CTCATCGTGAAGGATCTCAACCTGGACATTCGCAAGGGCGAATTCCTCACCCTGCTCGGCCCCTCCGGGTCC 
GGCAAGACCACCAGCCTGATGATGCTGGCCGGTTTCGAAACCCCCACCGCCGGCGAAATCCTCCTGGCCGGT 
CGCTCGATCAACAATGTCCCTCCGCACAAGCGCGACATCGGCATGGTGTTCCAGAACTATGCGCTGTTCCCG 
CACATGACCGTGGCCGAGAACCTGGCCTTTCCCCTCAGCGTCCGCGGCATGAGCAAGACCGACGTGAAGGAA 
AGGGTCAAGCGCGCGTTGTCGATGGTCCAGCTCGACGCCTTCGCCGGGCGTTATCCGGCGCAACTTTCCGGT 
GGCCAGCAGCAGCGCGTGGCGCTGGCCCGCGCGCTGGTCTTCGAGCCGCAACTGGTGCTGATGGACGAGCCC 
CTGGGAGCGCTGGACAAGCAACTTCGCGAGCACATGCAGATGGAAATCAAGCATCTGCACCAGCGCCTCGGC 
GTCACCGTGGTCTACGTCACCCACGACCAGGGCGAGGCGCTGACCATGTCCGACCGGGTGGCGGTGTTCCAC 
CAGGGCGAAATCCAGCAGATCGAGCCGCCGCGCAATCTCTACGAGCAGCCGCGCAACACCTTCGTGGCCAAC 
TTCATCGGTGAGAACAACCGTCTATCCGGGCAGCTTCTCAGTTGCGACGGCGAGCGCTGCGTGGTCGGACTG 
CCGCGCGGCGAGAAGGTCGAGGCGCTGGCGGTCAACGTCGGCCAGCCGGGCGAGCCGGTGACCTTGTCGATC 
CGCCCCGAGCGGGTGCGCCTGAACGGTGCCAGCGAGTCTTGCGTCAACCGTTTCTCCGGCCGCGTGGCCGAG 
TTCGTCTACCTGGGCGACCACGTGCGTGTGCGCCTGGAGGTCTGCGGCCGCGACGACTTCTTCGTCAAGCAG 
CCGATCGCCGAGCTGGACCCGACGCTGAGCGTCGGTGATGTGGTTCCGCTGGGCTGGCAGGTCGAGCATGTG 
AGGGCGCTCGACCCTCTGCCGGCGGCGTGA