ViewGene
Locus Name:
GeneID:
Location:

GeneID:1751
TrivialName: PA14_05580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05580
PAO1 Ortholog Locus:PA0429
Sequence Length:1071
Protein Length:356
Start: 495877
Stop: 494807
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03818.1|AE004480_2 (AE004480) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 355/356 (99%), Positives = 356/356 (100%)
Sequence:
ATGGCCAACTCACGCAAGCATCTGATCTACCTGGTCTACGGGCGACAGACCTACCACCAGGAAGCCCTGTTC
AGCATCGCCAGCGCCTTCGCCCACCTCCGCGACGGGGCGGCGCATGGCCTGACGGTCAGGGTCTATACCGAC
GACCCCAGTCCCTACGCCGGCCTGCCGGTGCAGGTCCGCGAAGTGACGGCCGAGGAGCTGGTCGCCTGGTGC
CAACCGCACGGCTATCACTTCCGCGCCAAGCACGTGGCCCTGCGCGACGCCCTGGAAGACGCCGACCAGGCA
TTGCTGATCGACACCGATACCTTCTTCCACAGTTCGCCCCTGCGCCTGTTCGACCGCATCCAGCCCGGCAGC
CTGCTGTGCAACGCGATCGGCGCGCGCTATGGCGAACACCGTAACTTCCCGCTCTACCGCGACCTCTCGCCC
TACCTGTTCGAGCGCGGCTGGGCCGACGACGAGATGCACCAGCTCAACTCCGGCGTCATCGGCCTGCCTCGG
GAAGAGGCGAAAATACTCGACCGTTCGTTGGAATTAATGGATGAACTCTATCCAATTGCCAACGGTGCCTAT
ACTCTTGAGGAATTCGTCCTGGCCGTCGCCGCCCACAAGCGGCTGGAGCTGGTGGGTTGTACCGACCTGATC
CACCATTACTGGAGCCGGAAACAGCTGTTCCGCGCGAAGATCCAGGCCTGGTTGTGCAAGCACGGTTCCTCC
CTTCTCAGCGCTGCAGCCCtCGACGACACCCTCAAGGTGACCGATCGACTGCCACGCCCACCGCGTGCCAAG
CGTCTGCTGTACAAGCTGGGAACCCTGCCGTTGCCGGCTCCGATGCGCCAGTTCAGTATCGAACTGCTCTAC
GGTTGCCACGAATACAGTAACGAGTTCGACCGGGCCTGCGGCCCCGTCTGGTGGGAGAAAGCCGCGACCAAT
GCCATCGAACGCTATCCGCAGGAACCGATTGCGGAACAAATCGAGGATTGGCTGAATCACAGCTTGCTGCGC
AACCTCCTTGGCTCCCGGGCCAACGAGATCCGCCAGCATTTGCGCCAGCGTGACCTGCTCTGA
Translation:
MANSRKHLIYLVYGRQTYHQEALFSIASAFAHLRDGAAHGLTVRVYTDDPSPYAGLPVQVREVTAEELVAWC
QPHGYHFRAKHVALRDALEDADQALLIDTDTFFHSSPLRLFDRIQPGSLLCNAIGARYGEHRNFPLYRDLSP
YLFERGWADDEMHQLNSGVIGLPREEAKILDRSLELMDELYPIANGAYTLEEFVLAVAAHKRLELVGCTDLI
HHYWSRKQLFRAKIQAWLCKHGSSLLSAAALDDTLKVTDRLPRPPRAKRLLYKLGTLPLPAPMRQFSIELLY
GCHEYSNEFDRACGPVWWEKAATNAIERYPQEPIAEQIEDWLNHSLLRNLLGSRANEIRQHLRQRDLL*
AnnotationID:1760GeneID:1751
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 09:09:42
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0429
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:3505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20652




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1751
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3073
                           PA0429_tr
                           translation of PA0429
                           356
                           99.71
                           99.99
                           0
                           1889.0
     

     
     
94646
                           gb|AAG03818.1|AE004480_2
                           (AE004480) hypothetical protein PA0429 [Pseudomonas aeruginosa PAO1]
                           356
                           99.71
                           99.99
                           0
                           1889.0
     

     
     
94647
                           gb|AAN70544.1|AE016696_9
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           363
                           52.89
                           62.25
                           9
                           931.0
     

     






      

          
GC ORFID: 44753How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0429Glimmer Score: 

          
Start: 6297219Stop: 6296149

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0429 translation of PA0429Homolog Bit Score 732.0

          
Other Homologs:  t_PA0429 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCAACTCACGCAAGCATCTGATCTACCTGGTCTACGGGCGACAGACCTACCACCAGGAAGCCCTGTTC 
AGCATCGCCAGCGCCTTCGCCCACCTCCGCGACGGGGCGGCGCATGGCCTGACGGTCAGGGTCTATACCGAC 
GACCCCAGTCCCTACGCCGGCCTGCCGGTGCAGGTCCGCGAAGTGACGGCCGAGGAGCTGGTCGCCTGGTGC 
CAACCGCACGGCTATCACTTCCGCGCCAAGCACGTGGCCCTGCGCGACGCCCTGGAAGACGCCGACCAGGCA 
TTGCTGATCGACACCGATACCTTCTTCCACAGTTCGCCCCTGCGCCTGTTCGACCGCATCCAGCCCGGCAGC 
CTGCTGTGCAACGCGATCGGCGCGCGCTATGGCGAACACCGTAACTTCCCGCTCTACCGCGACCTCTCGCCC 
TACCTGTTCGAGCGCGGCTGGGCCGACGACGAGATGCACCAGCTCAACTCCGGCGTCATCGGCCTGCCTCGG 
GAAGAGGCGAAAATACTCGACCGTTCGTTGGAATTAATGGATGAACTCTATCCAATTGCCAACGGTGCCTAT 
ACTCTTGAGGAATTCGTCCTGGCCGTCGCCGCCCACAAGCGGCTGGAGCTGGTGGGTTGTACCGACCTGATC 
CACCATTACTGGAGCCGGAAACAGCTGTTCCGCGCGAAGATCCAGGCCTGGTTGTGCAAGCACGGTTCCTCC 
CTTCTCAGCGCTGCAGCCCtCGACGACACCCTCAAGGTGACCGATCGACTGCCACGCCCACCGCGTGCCAAG 
CGTCTGCTGTACAAGCTGGGAACCCTGCCGTTGCCGGCTCCGATGCGCCAGTTCAGTATCGAACTGCTCTAC 
GGTTGCCACGAATACAGTAACGAGTTCGACCGGGCCTGCGGCCCCGTCTGGTGGGAGAAAGCCGCGACCAAT 
GCCATCGAACGCTATCCGCAGGAACCGATTGCGGAACAAATCGAGGATTGGCTGAATCACAGCTTGCTGCGC 
AACCTCCTTGGCTCCCGGGCCAACGAGATCCGCCAGCATTTGCGCCAGCGTGACCTGCTCTGA