ViewGene
Locus Name:
GeneID:
Location:

GeneID:175
TrivialName: PA14_44440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44440
PAO1 Ortholog Locus:PA1549
Sequence Length:2436
Protein Length:811
Start: 3956148
Stop: 3958583
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04938.1|AE004583_3 (AE004583) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
Identities = 808/811 (99%), Positives = 808/811 (99%)
Sequence:
ATGAGCGCCCCCCTGCCCTGCTACCACTGCGGCTTGCCGGTCCCCGCCGGCAGCCGCTTCGAGGCCCGCGTG
CTCGGCGAGACGCGGGCCATGTGCTGTCCGGGCTGCCAGGCGGTGGCCGAGGCCATCGTCGCCGGCGGCCTG
GAAAGCTACTACCGGCACCGCAGCGAAAACGCCGCCAACCCCGAGGCCTTGCCCAAGGCGCTCAGCGAAGAG
TTGCAGCTCTACGACCGCCCGGACGTACAGGGCGGCTTCGTCCGCCATGAGGGCGAGCTGGCGGAAACCAGC
CTGATGATCGAAGGCATCAGTTGCGCCGCCTGCGGCTGGCTGATCGAGAAGCACCTGCGCCAGTTGCCTGGC
GTGGCCGAGGCGCGGCTCAACCTGTCCAACCATCGCCTGCACGTGCGCTGGCAGGACAGCCAGTTGCCGCTC
AGCCAGTTGCTCGGCGAACTGCGCCAGATCGGCTATGCCGGCCATCCCTACCAACCCGACCACGCCACCGAG
CGCCTGGCCATGGAGAACCGCCGCGCCCTGCGCCAGCTCGGTGTCGCCGGGCTGCTGTGGATCCAGGTGATG
ATGGCGGTGATGGCGACCTGGCCGGAATTCAACCTCGACCTTTCCGCCGGCATGGACCGCATCCTGCGCTGG
GTCAGCCTGATCCTCACCACGCCGATCGTCTTCTACTGCTGCGGCCAGTTCTTCCGTGGCGCCCTGCGCGAC
CTGCGCACCCGCCACCTGACCATGGACGTCTCGGTGTCGCTGGCGATCGGCGGCGCCTACGTCGCCGGCATC
TGGTCGACGATCACCGGCCaGGGCGAGCTGTATTTCGACGCGGTCGGCATGTTCGCCCTGTTCCTCCTCGCC
GGCCGCTACCTCGAACGCCGCGCGCGGGAGCGCACCGCCGCCTCCACCGCGCAACTGGTCAACCTGCTGCCG
GCGTCCTGCCTGCGCCTGGACGCCGCCAACCAGGGCGAGCGCATCCTGCTCAGCGAACTGCGCGTCGGCGAC
CGCGTGCTGGTACCGCCAGGCGCCGTGCTGCCGGCCGACGGAGTGATCCTCGACGGCCAGTCCAGCGTCGAC
GAGTCGCTGCTCACCGGCGAGTACCTGCCCCATCCACGCCAGGCCGGCGACACCGTCACCGGCGGTACCCTG
AACGTCGAGGGGCCGCTGACCGTCGAGGTCGGCGCCCTTGGCGACGACAGCCGCCTGTCGGCCATCGTCCGC
CTGCTGGAACGCGCCCAGGCGGACAAGCCGCGCCTGGCGGAACTGGCCGACAAGGTGGCGCAGTGGTTCCTG
CTCATCGTCCTGCTGGTCGCCGCAGCGGTCGGCGCGCTGTGGTGGCAGGTCGACCACCAGCGCGCCTTCTGG
GTGGTGCTGTCGCTGCTGGTCGCCACCTGCCCCTGCGCCCTGTCGCTGGCCACGCCCACCGCGCTCACCGCG
GCCACCGGCAGCCTGCACAAGCTCGGCCTGCTGATCACGCGCGGGCACGTGCTGGAAGGGCTGAACCACATC
GACACGGTAATCTTCGACAAGACCGGCACCCTCACCGAAGGCCGCCTGACGCTCAAGCAGGTGCTACCCCTG
CGCGATCTCGACGCGGATCGCTGCCTGGCCCTCGCCGCCGCCCTCGAGAACCGTTCCGAACACCCCATCGCC
CGCGCCTTCGGCCGTGCGCCGGAGGCCGCCGACAGCGTCGCAAGCCATCCGGGACTGGGCCTCGAAGGCCTG
GTGGAAGGCCGCCGCCTGCGCATCGGCCAGGCCGCCTTCGTCAGCAACCTGGGCGGCAGCGCCACGCCCGCG
ATGCCCGGCGACTCCGGACAGTGGCTGCTGCTCGGCGACGAGCAGGGACCGCTGGCCTGGTTCGGTCTCGAC
GACCGCCTGCGCAGCGACGCCCCCGCCCTGCTCGCCGCCTGCAAGGCGCGCGGCTGGCGCACCCTCCTGCTA
TCCGGCGACGCCTCGCCGATGGTCGCCAGCGTCGCTGCCGAACTGGGCATCGACGAAGCCCGCGGCGGCCTG
ACCCCGGACGACAAGCTGGCCATGCTCGAACGCCTGCACGGCGAGGGCCGCCGGGTGCTGATGCTCGGCGAC
GGAGTCAACGACGTACCGGTGCTCGCCGGTGCCGACATCAGCGTCGCCATGGGCAGCGCCACCGACCTGGCC
AAGACCAGCGCCGACGCGGTGCTCCTGTCCAACCGCCTGGACAGCCTGGTGCAGGCTTTCCGGCTGGCGCGC
CGCACCCGCCATATCATCATCGAGAACCTGGCCTGGGCCAGCCTGTACAATGGCCTGGTCCTGCCCTTCGCC
GCGCTCGGCTGGATCACCCCGGGCTGGGCGGCGATCGGCATGTCGGTCAGTTCGCTGCTGGTGGTGGTCAAC
GCCCTGCGGCTGACCCGAATCCCTTCGCCGAGGTCCGTATGGCCGCGCTCTACATCCTGA
Translation:
MSAPLPCYHCGLPVPAGSRFEARVLGETRAMCCPGCQAVAEAIVAGGLESYYRHRSENAANPEALPKALSEE
LQLYDRPDVQGGFVRHEGELAETSLMIEGISCAACGWLIEKHLRQLPGVAEARLNLSNHRLHVRWQDSQLPL
SQLLGELRQIGYAGHPYQPDHATERLAMENRRALRQLGVAGLLWIQVMMAVMATWPEFNLDLSAGMDRILRW
VSLILTTPIVFYCCGQFFRGALRDLRTRHLTMDVSVSLAIGGAYVAGIWSTITGQGELYFDAVGMFALFLLA
GRYLERRARERTAASTAQLVNLLPASCLRLDAANQGERILLSELRVGDRVLVPPGAVLPADGVILDGQSSVD
ESLLTGEYLPHPRQAGDTVTGGTLNVEGPLTVEVGALGDDSRLSAIVRLLERAQADKPRLAELADKVAQWFL
LIVLLVAAAVGALWWQVDHQRAFWVVLSLLVATCPCALSLATPTALTAATGSLHKLGLLITRGHVLEGLNHI
DTVIFDKTGTLTEGRLTLKQVLPLRDLDADRCLALAAALENRSEHPIARAFGRAPEAADSVASHPGLGLEGL
VEGRRLRIGQAAFVSNLGGSATPAMPGDSGQWLLLGDEQGPLAWFGLDDRLRSDAPALLAACKARGWRTLLL
SGDASPMVASVAAELGIDEARGGLTPDDKLAMLERLHGEGRRVLMLGDGVNDVPVLAGADISVAMGSATDLA
KTSADAVLLSNRLDSLVQAFRLARRTRHIIIENLAWASLYNGLVLPFAALGWITPGWAAIGMSVSSLLVVVN
ALRLTRIPSPRSVWPRSTS*
AnnotationID:185GeneID:175
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:23
Gene Name:
Confidence Code:3
GeneProduct:putative cation-transporting P-type ATPase
Cell Localization:()
Synonyms:PA1549, fixI
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative copper-translocating P-type ATPase
Functional Category Confidence Code:5
COGs:COG2217,pfam00122,COG2216
Secondary Functional Category(ies):membrane protein
EC Number:3.6.3.-
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69841.1|AE016623_3 (AE016790) cation-transporting P-type ATPase [Pseudomonas putida
           KT2440]
          Length = 882

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 623/800 (77%), Positives = 686/800 (85%)

>gb|AAO55514.1| (AE016862) copper-translocating P-type ATPase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 823

 Score = 1206 bits (3120), Expect = 0.0
 Identities = 613/814 (75%), Positives = 672/814 (82%), Gaps = 8/814 (0%)

>gb|AAF94594.1| (AE004222) cation transport ATPase, E1-E2 family [Vibrio cholerae]
          Length = 790

 Score =  627 bits (1618), Expect = e-179
 Identities = 354/798 (44%), Positives = 494/798 (61%), Gaps = 22/798 (2%)






 
Structural Features:
COG2217, ZntA, Cation transport ATPase 
[Inorganic ion transport and metabolism]
CD-Length = 713 residues, 100.0% aligned
Score =  674 bits (1741), Expect = 0.0
Identities = 296/727 (40%), Positives = 417/727 (57%), Gaps = 30/727 (4%)

pfam00122, E1-E2_ATPase, E1-E2 ATPase.
CD-Length = 223 residues,  99.6% aligned
Score =  180 bits (459), Expect = 4e-46
Identities = 81/223 (36%), Positives = 110/223 (49%), Gaps = 5/223 (2%)

COG2216, KdpB, High-affinity K+ transport system, ATPase chain B 
[Inorganic ion transport and metabolism]
CD-Length = 681 residues,  65.1% aligned
Score =  155 bits (394), Expect = 2e-38
Identities = 134/453 (29%), Positives = 212/453 (46%), Gaps = 50/453 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:353




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17495




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37320




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:175_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:175
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
310
                           PA1549_tr
                           translation of PA1549
                           811
                           99.63
                           99.63
                           0
                           4137.0
     

     
     
20812
                           gb|AAG04938.1|AE004583_3
                           (AE004583) probable cation-transporting P-type ATPase [Pseudomonas aeruginosa PAO1]
                           811
                           99.63
                           99.63
                           0
                           4137.0
     

     
     
20814
                           gb|AAO55514.1|
                           (AE016862) copper-translocating P-type ATPase [Pseudomonas syringae pv. tomato str. DC3000]
                           823
                           74.60
                           82.01
                           12
                           3123.0
     

     
     
20813
                           gb|AAN69841.1|AE016623_3
                           (AE016790) cation-transporting P-type ATPase [Pseudomonas putida KT2440]
                           882
                           70.74
                           77.89
                           71
                           3221.0
     

     
     
20815
                           gb|AAQ59714.1|
                           (AE016917) probable cation transport P-type ATPase [Chromobacterium violaceum ATCC 12472]
                           832
                           46.63
                           60.93
                           45
                           1756.0
     

     






      

          
GC ORFID: 43177How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1549Glimmer Score: 

          
Start: 997761Stop: 995326

          
Length: 2436


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1549 translation of PA1549Homolog Bit Score 1598.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7533 (ORF: BLASTX 1194.0), t_PA1549 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCCCCCTGCCCTGCTACCACTGCGGCTTGCCGGTCCCCGCCGGCAGCCGCTTCGAGGCCCGCGTG 
CTCGGCGAGACGCGGGCCATGTGCTGTCCGGGCTGCCAGGCGGTGGCCGAGGCCATCGTCGCCGGCGGCCTG 
GAAAGCTACTACCGGCACCGCAGCGAAAACGCCGCCAACCCCGAGGCCTTGCCCAAGGCGCTCAGCGAAGAG 
TTGCAGCTCTACGACCGCCCGGACGTACAGGGCGGCTTCGTCCGCCATGAGGGCGAGCTGGCGGAAACCAGC 
CTGATGATCGAAGGCATCAGTTGCGCCGCCTGCGGCTGGCTGATCGAGAAGCACCTGCGCCAGTTGCCTGGC 
GTGGCCGAGGCGCGGCTCAACCTGTCCAACCATCGCCTGCACGTGCGCTGGCAGGACAGCCAGTTGCCGCTC 
AGCCAGTTGCTCGGCGAACTGCGCCAGATCGGCTATGCCGGCCATCCCTACCAACCCGACCACGCCACCGAG 
CGCCTGGCCATGGAGAACCGCCGCGCCCTGCGCCAGCTCGGTGTCGCCGGGCTGCTGTGGATCCAGGTGATG 
ATGGCGGTGATGGCGACCTGGCCGGAATTCAACCTCGACCTTTCCGCCGGCATGGACCGCATCCTGCGCTGG 
GTCAGCCTGATCCTCACCACGCCGATCGTCTTCTACTGCTGCGGCCAGTTCTTCCGTGGCGCCCTGCGCGAC 
CTGCGCACCCGCCACCTGACCATGGACGTCTCGGTGTCGCTGGCGATCGGCGGCGCCTACGTCGCCGGCATC 
TGGTCGACGATCACCGGCCaGGGCGAGCTGTATTTCGACGCGGTCGGCATGTTCGCCCTGTTCCTCCTCGCC 
GGCCGCTACCTCGAACGCCGCGCGCGGGAGCGCACCGCCGCCTCCACCGCGCAACTGGTCAACCTGCTGCCG 
GCGTCCTGCCTGCGCCTGGACGCCGCCAACCAGGGCGAGCGCATCCTGCTCAGCGAACTGCGCGTCGGCGAC 
CGCGTGCTGGTACCGCCAGGCGCCGTGCTGCCGGCCGACGGAGTGATCCTCGACGGCCAGTCCAGCGTCGAC 
GAGTCGCTGCTCACCGGCGAGTACCTGCCCCATCCACGCCAGGCCGGCGACACCGTCACCGGCGGTACCCTG 
AACGTCGAGGGGCCGCTGACCGTCGAGGTCGGCGCCCTTGGCGACGACAGCCGCCTGTCGGCCATCGTCCGC 
CTGCTGGAACGCGCCCAGGCGGACAAGCCGCGCCTGGCGGAACTGGCCGACAAGGTGGCGCAGTGGTTCCTG 
CTCATCGTCCTGCTGGTCGCCGCAGCGGTCGGCGCGCTGTGGTGGCAGGTCGACCACCAGCGCGCCTTCTGG 
GTGGTGCTGTCGCTGCTGGTCGCCACCTGCCCCTGCGCCCTGTCGCTGGCCACGCCCACCGCGCTCACCGCG 
GCCACCGGCAGCCTGCACAAGCTCGGCCTGCTGATCACGCGCGGGCACGTGCTGGAAGGGCTGAACCACATC 
GACACGGTAATCTTCGACAAGACCGGCACCCTCACCGAAGGCCGCCTGACGCTCAAGCAGGTGCTACCCCTG 
CGCGATCTCGACGCGGATCGCTGCCTGGCCCTCGCCGCCGCCCTCGAGAACCGTTCCGAACACCCCATCGCC 
CGCGCCTTCGGCCGTGCGCCGGAGGCCGCCGACAGCGTCGCAAGCCATCCGGGACTGGGCCTCGAAGGCCTG 
GTGGAAGGCCGCCGCCTGCGCATCGGCCAGGCCGCCTTCGTCAGCAACCTGGGCGGCAGCGCCACGCCCGCG 
ATGCCCGGCGACTCCGGACAGTGGCTGCTGCTCGGCGACGAGCAGGGACCGCTGGCCTGGTTCGGTCTCGAC 
GACCGCCTGCGCAGCGACGCCCCCGCCCTGCTCGCCGCCTGCAAGGCGCGCGGCTGGCGCACCCTCCTGCTA 
TCCGGCGACGCCTCGCCGATGGTCGCCAGCGTCGCTGCCGAACTGGGCATCGACGAAGCCCGCGGCGGCCTG 
ACCCCGGACGACAAGCTGGCCATGCTCGAACGCCTGCACGGCGAGGGCCGCCGGGTGCTGATGCTCGGCGAC 
GGAGTCAACGACGTACCGGTGCTCGCCGGTGCCGACATCAGCGTCGCCATGGGCAGCGCCACCGACCTGGCC 
AAGACCAGCGCCGACGCGGTGCTCCTGTCCAACCGCCTGGACAGCCTGGTGCAGGCTTTCCGGCTGGCGCGC 
CGCACCCGCCATATCATCATCGAGAACCTGGCCTGGGCCAGCCTGTACAATGGCCTGGTCCTGCCCTTCGCC 
GCGCTCGGCTGGATCACCCCGGGCTGGGCGGCGATCGGCATGTCGGTCAGTTCGCTGCTGGTGGTGGTCAAC 
GCCCTGCGGCTGACCCGAATCCCTTCGCCGAGGTCCGTATGGCCGCGCTCTACATCCTGA