ViewGene
Locus Name:
GeneID:
Location:

GeneID:1749
TrivialName: PA14_01800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01800
PAO1 Ortholog Locus:PA0146
Sequence Length:1098
Protein Length:365
Start: 164828
Stop: 165925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03536.1|AE004452_8 (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 362/365 (99%), Positives = 362/365 (99%)
Sequence:
ATGAAACACCGTCCCACGCAATCCCGCATGTCCGTCCTGCGCCGCCTTGCCGTCGTCCTCGGCCTCGGCGCC
TGCGCTCTCGCCGCCGAGGCCGCCGAACCACTgaAgATCGGCttcGTctAtgtCGGCCCGGTcggcGAccac
GGCTGGACCTACCAGCACGaGCTGGGCCGCCGCGAACTGGTGGAGCACTTCGGCGACAAGGTGAAGACCAGC
TTCGTCGAGAACGTCGCCGAGGGCGCCGACGCCGAGCGGGTCATCCGCAACCTGGCGAAAGACGGCTACGGC
CTGGTCTTCACCACTTCCTTCGGCTACATGAACCCCACCGCCAAGGTGGCCCGACAGTTTCCCAAGGTGACC
TTCGAGCACGCCACCGGCTACAAGCGCGACAGGAACCTCGGCACCTACCTGTCGCGCTCCTACGAGGGACGC
TACGTCGGCGGCTTCCTCGCGGCGAAGATGACCCGCAGCCACAAGATCGGCTACATCGCCTCGTTTCCGATT
CCCGAGGTGATCCGCGACATCAACGCGATCCAGCTGGCGCTGGACAAATACGACCCGCAGGCCGAACTCAAG
GTGATGTGGGTGAGCACCTGGTTCGATCCGGGCAAGGAGGCCGACGCGGCCAACGCGCTGATCGACCAGGGC
GTCGACGTGGTGTTCCAGCACACCGATAGCCCGGCGCCGATCCAGGCCGCCGAGCGTCGCGGGGTGTACGCC
GTGGGCTACGCCTCGGACATGCAGCACTTCGGTCCGAAGACCGTGCTCACCTCGATCGTCAACGACTGGGGC
CCGCACTATATCCGCTCGGCCCAGGCGGTGATGGACGGCACCTGGAAATCCGAGGACTTCTGGGGCGGCTTG
GCCGAGAGTACGGTGGTCCTGCCGCTGAACCAGGAGGTGCTGCCGGCGCCGGTGCGGGAAGAGGCGGGCAGG
CTGATCGAGTCGATCCGCAGCGGAGCCTTCCACCCCTTCACCGGGCCGATCCGCGACCAGTCCGGCAAGGAG
CGTTTCGCCGCCGGCGTCAGCGCGACCAATGCCGACCTGGCGTCGATGAACTATTACGTGGAAGGCATCAAG
GCCGACCTGCCGAAGTGA
Translation:
MKHRPTQSRMSVLRRLAVVLGLGACALAAEAAEPLKIGFVYVGPVGDHGWTYQHELGRRELVEHFGDKVKTS
FVENVAEGADAERVIRNLAKDGYGLVFTTSFGYMNPTAKVARQFPKVTFEHATGYKRDRNLGTYLSRSYEGR
YVGGFLAAKMTRSHKIGYIASFPIPEVIRDINAIQLALDKYDPQAELKVMWVSTWFDPGKEADAANALIDQG
VDVVFQHTDSPAPIQAAERRGVYAVGYASDMQHFGPKTVLTSIVNDWGPHYIRSAQAVMDGTWKSEDFWGGL
AESTVVLPLNQEVLPAPVREEAGRLIESIRSGAFHPFTGPIRDQSGKERFAAGVSATNADLASMNYYVEGIK
ADLPK*
AnnotationID:1758GeneID:1749
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative basic membrane protein (bmp)
Cell Localization:()
Synonyms:PA0146
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:putative ABC transporter substrate-binding protein
Functional Category Confidence Code:5
COGs:COG1744,pfam02608
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54301.1| (AE016858) bmp family protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 364

 Score =  546 bits (1408), Expect = e-155
 Identities = 258/361 (71%), Positives = 313/361 (86%), Gaps = 2/361 (0%)

>gb|AAL53944.1| (AE009705) ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN [Brucella
           melitensis 16M]
          Length = 363

 Score =  382 bits (980), Expect = e-105
 Identities = 195/368 (52%), Positives = 248/368 (67%), Gaps = 8/368 (2%)

>gb|AAN33756.1|AE014553_4 (AE014553) bmp family protein [Brucella suis 1330]
          Length = 355

 Score =  380 bits (976), Expect = e-105
 Identities = 186/339 (54%), Positives = 238/339 (70%), Gaps = 3/339 (0%)






 
Structural Features:
COG1744, Med, Uncharacterized ABC-type transport system, 
periplasmic component/surface lipoprotein
CD-Length = 345 residues,  99.4% aligned
Score =  300 bits (769), Expect = 2e-82
Identities = 120/346 (34%), Positives = 173/346 (50%), Gaps = 13/346 (3%)

pfam02608, Bmp, Basic membrane protein.
CD-Length = 325 residues,  95.1% aligned
Score =  174 bits (442), Expect = 2e-44
Identities = 68/311 (21%), Positives = 126/311 (40%), Gaps = 11/311 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3501




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20648




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33511




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1749_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1749
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3070
                           PA0146_tr
                           translation of PA0146
                           365
                           99.17
                           99.17
                           0
                           1889.0
     

     
     
94542
                           gb|AAG03536.1|AE004452_8
                           (AE004452) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           365
                           99.17
                           99.17
                           0
                           1889.0
     

     
     
94543
                           gb|AAO54301.1|
                           (AE016858) bmp family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           70.57
                           85.55
                           5
                           1408.0
     

     
     
94544
                           gb|AAL53944.1|
                           (AE009705) ABC TRANSPORTER PERIPLASMIC BINDING PROTEIN [Brucella melitensis 16M]
                           368
                           52.98
                           67.39
                           8
                           990.0
     

     
     
94545
                           gb|AAN33756.1|AE014553_4
                           (AE014553) bmp family protein [Brucella suis 1330]
                           368
                           52.17
                           66.57
                           16
                           982.0
     

     






      

          
GC ORFID: 44751How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0146Glimmer Score: 

          
Start: 5966167Stop: 5967264

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0146 translation of PA0146Homolog Bit Score 732.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3601 (ORF: BLASTX 546.0), t_PA0146 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACACCGTCCCACGCAATCCCGCATGTCCGTCCTGCGCCGCCTTGCCGTCGTCCTCGGCCTCGGCGCC 
TGCGCTCTCGCCGCCGAGGCCGCCGAACCACTgaAgATCGGCttcGTctAtgtCGGCCCGGTcggcGAccac 
GGCTGGACCTACCAGCACGaGCTGGGCCGCCGCGAACTGGTGGAGCACTTCGGCGACAAGGTGAAGACCAGC 
TTCGTCGAGAACGTCGCCGAGGGCGCCGACGCCGAGCGGGTCATCCGCAACCTGGCGAAAGACGGCTACGGC 
CTGGTCTTCACCACTTCCTTCGGCTACATGAACCCCACCGCCAAGGTGGCCCGACAGTTTCCCAAGGTGACC 
TTCGAGCACGCCACCGGCTACAAGCGCGACAGGAACCTCGGCACCTACCTGTCGCGCTCCTACGAGGGACGC 
TACGTCGGCGGCTTCCTCGCGGCGAAGATGACCCGCAGCCACAAGATCGGCTACATCGCCTCGTTTCCGATT 
CCCGAGGTGATCCGCGACATCAACGCGATCCAGCTGGCGCTGGACAAATACGACCCGCAGGCCGAACTCAAG 
GTGATGTGGGTGAGCACCTGGTTCGATCCGGGCAAGGAGGCCGACGCGGCCAACGCGCTGATCGACCAGGGC 
GTCGACGTGGTGTTCCAGCACACCGATAGCCCGGCGCCGATCCAGGCCGCCGAGCGTCGCGGGGTGTACGCC 
GTGGGCTACGCCTCGGACATGCAGCACTTCGGTCCGAAGACCGTGCTCACCTCGATCGTCAACGACTGGGGC 
CCGCACTATATCCGCTCGGCCCAGGCGGTGATGGACGGCACCTGGAAATCCGAGGACTTCTGGGGCGGCTTG 
GCCGAGAGTACGGTGGTCCTGCCGCTGAACCAGGAGGTGCTGCCGGCGCCGGTGCGGGAAGAGGCGGGCAGG 
CTGATCGAGTCGATCCGCAGCGGAGCCTTCCACCCCTTCACCGGGCCGATCCGCGACCAGTCCGGCAAGGAG 
CGTTTCGCCGCCGGCGTCAGCGCGACCAATGCCGACCTGGCGTCGATGAACTATTACGTGGAAGGCATCAAG 
GCCGACCTGCCGAAGTGA