ViewGene

Locus Name:
GeneID:
Location:

GeneID:1748
TrivialName: PA14_64800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64800
PAO1 Ortholog Locus:PA4904
Sequence Length:1056
Protein Length:351
Start: 5774457
Stop: 5775512
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08289.1|AE004903_7 (AE004903) vanillate O-demethylase oxygenase subunit [Pseudomonas aeruginosa PAO1]
Identities = 350/351 (99%), Positives = 350/351 (99%)
Sequence:
ATGTTTCCGAAGAACGCCTGGTACGTGGCCTGCACCCCCGACGAACTGGCCGGCAAGCCGCTCGGCCGACGC
ATCTGCGACGAGCCGATGGTTTTCTACCGAGGCGAGGACGGCCGCGTGGCGGCCCTCGAGGATTTCTGCCCG
CACCGTGGCGCGCCGCTGTCGCTGGGCTTCGTCGAGGACGGCGTGCTGGTCTGCGGCTACCACGGCCTGGCG
ATGGGCGAGGACGGTCGCACCCGCGCGATGCCCGGCCAGCGGGTCCGCGGCTTCCCCTGCATCCGTCGCTTC
CCGGTGCAGGAGCGGCACGGCTTCGTCTGGGTTTGGCCGGGCGCGGAAGAACAGGCCGACGCCGCGCTGATA
CCCCGCCTGGAATGGGCGGAAAGCCCTGATTGGGCCTATGGCGGCGGGCTGTACCACATCCACTGCGACTAT
CGCCTGATGATCGACAACCTGATGGACCTGACCCACGAGACCTATGTCCATGCGTCCAGCATCGGCCAGAAG
GAAATCGACGAGGCCGCGCCGACCACGCGGGTGGAAGGCGACGAGGTGATCACCAGCCGCCACATGCAGAAT
GTCATGGCCCCGCCGTTCTGGCGCATGGCCCTGCGCGGCAACGGCCTGGCCGACGACGTGGCGGTGGACCGC
TGGCAGATCTGCCGCTTCACGCCGCCCAGCCACGTGCTGATCGAGGTCGGCGTGGCCCACGCCGGCCACGGC
GGCTACCAGGCGCCGGCGGAGCGCAAGGCGGCGAGCATCGTGGTCGACTTCATCACCCCGGAGAGCGCCACT
TCCATCTGGTACTTCTGGGGCATGGCGCGCAACTTCCAGGCCCACGACCAGGCGCTCACCGAGAGCATTCGC
GAAGGCCAGGGAAAGATCTTCGGCGAAGACCTGGAAATGCTCGAAAGCCAGCAGCGCAACCTGCTGCGCCAT
CCACGGCGCGACCTGCTGAAACTGAACATCGACGCCGGCGGCGTGCAGGCCCGGCGCATCATCGAGCGCCTG
CTGGCGGACGAGCGCCAGGCCGCCGCCCCCAACCGCGCCCAGGCCTGA
Translation:
MFPKNAWYVACTPDELAGKPLGRRICDEPMVFYRGEDGRVAALEDFCPHRGAPLSLGFVEDGVLVCGYHGLA
MGEDGRTRAMPGQRVRGFPCIRRFPVQERHGFVWVWPGAEEQADAALIPRLEWAESPDWAYGGGLYHIHCDY
RLMIDNLMDLTHETYVHASSIGQKEIDEAAPTTRVEGDEVITSRHMQNVMAPPFWRMALRGNGLADDVAVDR
WQICRFTPPSHVLIEVGVAHAGHGGYQAPAERKAASIVVDFITPESATSIWYFWGMARNFQAHDQALTESIR
EGQGKIFGEDLEMLESQQRNLLRHPRRDLLKLNIDAGGVQARRIIERLLADERQAAAPNRAQA*
AnnotationID:1757GeneID:1748
AnnotatorUID: diggins
Modification Date/Time: 2005-04-26 07:07:09
Gene Name:vanA
Confidence Code:2
GeneProduct:vanillate O-demethylase oxygenase subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4638
Secondary Functional Category(ies):inorganic ion transport and metabolism
EC Number:1.14.13.82
Status:ACTIVE
Pathway:
Homology:
>gb|AAN69332.1|AE016570_9 (AE016788) vanillate demethylase A [Pseudomonas putida KT2440]
          Length = 355

 Score =  583 bits (1502), Expect = e-166
 Identities = 269/341 (78%), Positives = 301/341 (88%)

>emb|CAD17373.1| (AL646077) PROBABLE VANILLATE O-DEMETHYLASE OXYGENASE SUBUNIT
           OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
          Length = 342

 Score =  568 bits (1463), Expect = e-161
 Identities = 267/342 (78%), Positives = 294/342 (85%)

>gb|AAO56397.1| (AE016866) vanillate O-demethylase, oxygenase subunit [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 354

 Score =  560 bits (1444), Expect = e-159
 Identities = 263/345 (76%), Positives = 297/345 (86%)

Structural Features:
COG4638, HcaE, Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, 
large terminal subunit 
[Inorganic ion transport and metabolism]
CD-Length = 367 residues,  94.3% aligned
Score =  236 bits (603), Expect = 3e-63
Identities = 107/360 (29%), Positives = 144/360 (40%), Gaps = 26/360 (7%)
Genomic Context:
Comment:
ReferenceID:3499
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20646
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35156
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1748_cdd.html
URL:
ReferenceID:35931
Author/Investigator(s): Segura A, Bunz PV, D'Argenio DA, Ornston LN.
Title: Genetic analysis of a chromosomal region containing vanA and vanB, genes required for conversion of either ferulate or vanillate to protocatechuate in Acinetobacter.
PubMed: 10348863
MedLine:
Source:
J Bacteriol. 1999 Jun;181(11):3494-504.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10348863
ReferenceID:35932
Author/Investigator(s): Brunel F, Davison J.
Title: Cloning and sequencing of Pseudomonas genes encoding vanillate demethylase.
PubMed: 3170489
MedLine:
Source:
J Bacteriol. 1988 Oct;170(10):4924-30.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3170489
Homologs By Global Alignment
Gene ID:1748

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3069 PA4904_tr translation of PA4904 351 99.71 99.71 0 1889.0
94526 gb|AAG08289.1|AE004903_7 (AE004903) vanillate O-demethylase oxygenase subunit [Pseudomonas aeruginosa PAO1] 351 99.71 99.71 0 1889.0
94528 emb|CAA72287.1| (Y11521) a-subunit oxygenase [Pseudomonas sp.] 354 77.68 86.72 3 1492.0
94527 gb|AAN69332.1|AE016570_9 (AE016788) vanillate demethylase A [Pseudomonas putida KT2440] 357 76.19 85.43 8 1500.0
94529 emb|CAD17373.1| (AL646077) PROBABLE VANILLATE O-DEMETHYLASE OXYGENASE SUBUNIT OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum] 351 76.06 83.76 9 1463.0
GC ORFID: 44750How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4904Glimmer Score:
Start: 5038138Stop: 5039193
Length: 1056
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4904 translation of PA4904Homolog Bit Score 732.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene310 (ORF: BLASTX 567.0), t_PA4904 (ORF: GLIMMER)
GC ORF Sequence
ATGTTTCCGAAGAACGCCTGGTACGTGGCCTGCACCCCCGACGAACTGGCCGGCAAGCCGCTCGGCCGACGC
ATCTGCGACGAGCCGATGGTTTTCTACCGAGGCGAGGACGGCCGCGTGGCGGCCCTCGAGGATTTCTGCCCG
CACCGTGGCGCGCCGCTGTCGCTGGGCTTCGTCGAGGACGGCGTGCTGGTCTGCGGCTACCACGGCCTGGCG
ATGGGCGAGGACGGTCGCACCCGCGCGATGCCCGGCCAGCGGGTCCGCGGCTTCCCCTGCATCCGTCGCTTC
CCGGTGCAGGAGCGGCACGGCTTCGTCTGGGTTTGGCCGGGCGCGGAAGAACAGGCCGACGCCGCGCTGATA
CCCCGCCTGGAATGGGCGGAAAGCCCTGATTGGGCCTATGGCGGCGGGCTGTACCACATCCACTGCGACTAT
CGCCTGATGATCGACAACCTGATGGACCTGACCCACGAGACCTATGTCCATGCGTCCAGCATCGGCCAGAAG
GAAATCGACGAGGCCGCGCCGACCACGCGGGTGGAAGGCGACGAGGTGATCACCAGCCGCCACATGCAGAAT
GTCATGGCCCCGCCGTTCTGGCGCATGGCCCTGCGCGGCAACGGCCTGGCCGACGACGTGGCGGTGGACCGC
TGGCAGATCTGCCGCTTCACGCCGCCCAGCCACGTGCTGATCGAGGTCGGCGTGGCCCACGCCGGCCACGGC
GGCTACCAGGCGCCGGCGGAGCGCAAGGCGGCGAGCATCGTGGTCGACTTCATCACCCCGGAGAGCGCCACT
TCCATCTGGTACTTCTGGGGCATGGCGCGCAACTTCCAGGCCCACGACCAGGCGCTCACCGAGAGCATTCGC
GAAGGCCAGGGAAAGATCTTCGGCGAAGACCTGGAAATGCTCGAAAGCCAGCAGCGCAACCTGCTGCGCCAT
CCACGGCGCGACCTGCTGAAACTGAACATCGACGCCGGCGGCGTGCAGGCCCGGCGCATCATCGAGCGCCTG
CTGGCGGACGAGCGCCAGGCCGCCGCCCCCAACCGCGCCCAGGCCTGA