ViewGene
Locus Name:
GeneID:
Location:

GeneID:1746
TrivialName: PA14_33040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33040
PAO1 Ortholog Locus:PA2442
Sequence Length:1122
Protein Length:373
Start: 2891911
Stop: 2893032
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05830.1|AE004671_6 (AE004671) glycine cleavage system protein T2 [Pseudomonas aeruginosa PAO1]
Identities = 371/373 (99%), Positives = 372/373 (99%)
Sequence:
ATGACCGCAGAAACCCTCGCCAAGACGCCCCTGCACGCCCTGCACCTGGAACTGGGGGCGAAGATGGTGCCC
TTCGCCGGCTACGACATGCCGGTGCAGTACCCGGCCGGGGTGCTCAAGGAGCACCTGCACACCCGCGAGCAG
GCCGGTCTGTTCGATGTCTCGCACATGGGCCAGATCCGCCTGGTGGGCGCCGATGCGGCGCTGGCCCTGGAA
AGCCTGGTGCCGGTGGACATCCTCGACCTGCCGGTGGGCCAGCAGCGCTACGCGTTGTTCACCGACGAGCAG
GGCGGGATCCTCGACGACCTGATGGTGGCCAACCTCGGCGATTGCCTGCTGCTGGTGGTCAACGCCGCCTGC
AAGCACCAGGACCTGGCGCACCTGCGTCGTCACCTGGAGGGCCGTTGCAGCGTCGAGCCGCTGTTCGAGGAG
CGTGCCTTGCTCGCCCTCCAGGGACCGGCGGCGGTGCGGGTGCTGGAGCGCCTGGCGCCGCAGGTGGCGCAA
ATGACCTTCATGCAGTTCGCCCGTGTCGAGCTGCTCGGCCAGGACTGCTACGTCAGCCGCTCCGGCTATACC
GGTGAAGACGGCTACGAGATCTCCGTGCCCGCCGCCCATGCCGAGGCCCTGGCGCGGCGCCTGCTGGCCGAG
CCGGAAGTGGCGCCGATCGGCCTCGGCGCGCGCGACTCGCTGCGCCTGGAAGCCGGCCTGTGCCTCTACGGC
CACGACATGGACAGCGCCACCACGCCGGTCGAAGCCAGCCTCGGCTGGGCCATTTCCAAGGCGCGTCGCGCC
GATGGCGTGCGCGCCGGCGGCTTCCCCGGCGCCGAGCGGATCTTTGCCCAGCAGGCGCAGGGCGTTGCCAGC
AAGCGCGTCGGTTTCCTGCCGCAGGGGCGGATGCCGGTGCGCGAGGGCGCCGAGATCGTCGATGCCCAGGGC
CGGGCGATCGGCAAGGTCAGCAGCGGCGGTTTCGGTCCGAGCCTCAACGCGCCGTTGGCCATGGGCTACGTG
CCGAACGAACTGGCCGGCCTGGGCAGCGAGGTGACGGCGATGGTGCGCGGCAAGCCGGTGACCCTGGTGGTC
AGCAAGATGCCCTTCGTGGCGCAGCGCTACTACCGCGGTTGA
Translation:
MTAETLAKTPLHALHLELGAKMVPFAGYDMPVQYPAGVLKEHLHTREQAGLFDVSHMGQIRLVGADAALALE
SLVPVDILDLPVGQQRYALFTDEQGGILDDLMVANLGDCLLLVVNAACKHQDLAHLRRHLEGRCSVEPLFEE
RALLALQGPAAVRVLERLAPQVAQMTFMQFARVELLGQDCYVSRSGYTGEDGYEISVPAAHAEALARRLLAE
PEVAPIGLGARDSLRLEAGLCLYGHDMDSATTPVEASLGWAISKARRADGVRAGGFPGAERIFAQQAQGVAS
KRVGFLPQGRMPVREGAEIVDAQGRAIGKVSSGGFGPSLNAPLAMGYVPNELAGLGSEVTAMVRGKPVTLVV
SKMPFVAQRYYRG*
AnnotationID:1755GeneID:1746
AnnotatorUID: danlee
Modification Date/Time: 2004-03-08 13:01:19
Gene Name:gcvT2
Confidence Code:2
GeneProduct:glycine cleavage system protein T2
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Central intermediary metabolism 
EC Number:
Status:ACTIVE
Pathway:
Glycine, serine and threonine metabolism;Nitrogen metabolism;One carbon pool by folate
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20642




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1746
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3066
                           PA2442_tr
                           translation of PA2442
                           373
                           99.46
                           99.73
                           0
                           1890.0
     

     
     
94474
                           gb|AAG05830.1|AE004671_6
                           (AE004671) glycine cleavage system protein T2 [Pseudomonas aeruginosa PAO1]
                           373
                           99.46
                           99.73
                           0
                           1890.0
     

     
     
94475
                           gb|AAN66611.1|AE016288_10
                           (AE016777) glycine cleavage system T protein [Pseudomonas putida KT2440]
                           374
                           78.87
                           85.82
                           2
                           1493.0
     

     
     
94476
                           gb|AAO54800.1|
                           (AE016860) glycine cleavage system T protein [Pseudomonas syringae pv. tomato str. DC3000]
                           409
                           71.39
                           77.99
                           36
                           1492.0
     

     
     
94477
                           dbj|BAC62148.1|
                           (AP005086) glycine cleavage system protein T2 [Vibrio parahaemolyticus]
                           374
                           66.31
                           77.27
                           3
                           1241.0
     

     






      

          
GC ORFID: 44748How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2442Glimmer Score: 

          
Start: 2062005Stop: 2060884

          
Length: 1122


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2442 translation of PA2442Homolog Bit Score 732.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4967 (ORF: BLASTX 591.0), t_PA2442 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCAGAAACCCTCGCCAAGACGCCCCTGCACGCCCTGCACCTGGAACTGGGGGCGAAGATGGTGCCC 
TTCGCCGGCTACGACATGCCGGTGCAGTACCCGGCCGGGGTGCTCAAGGAGCACCTGCACACCCGCGAGCAG 
GCCGGTCTGTTCGATGTCTCGCACATGGGCCAGATCCGCCTGGTGGGCGCCGATGCGGCGCTGGCCCTGGAA 
AGCCTGGTGCCGGTGGACATCCTCGACCTGCCGGTGGGCCAGCAGCGCTACGCGTTGTTCACCGACGAGCAG 
GGCGGGATCCTCGACGACCTGATGGTGGCCAACCTCGGCGATTGCCTGCTGCTGGTGGTCAACGCCGCCTGC 
AAGCACCAGGACCTGGCGCACCTGCGTCGTCACCTGGAGGGCCGTTGCAGCGTCGAGCCGCTGTTCGAGGAG 
CGTGCCTTGCTCGCCCTCCAGGGACCGGCGGCGGTGCGGGTGCTGGAGCGCCTGGCGCCGCAGGTGGCGCAA 
ATGACCTTCATGCAGTTCGCCCGTGTCGAGCTGCTCGGCCAGGACTGCTACGTCAGCCGCTCCGGCTATACC 
GGTGAAGACGGCTACGAGATCTCCGTGCCCGCCGCCCATGCCGAGGCCCTGGCGCGGCGCCTGCTGGCCGAG 
CCGGAAGTGGCGCCGATCGGCCTCGGCGCGCGCGACTCGCTGCGCCTGGAAGCCGGCCTGTGCCTCTACGGC 
CACGACATGGACAGCGCCACCACGCCGGTCGAAGCCAGCCTCGGCTGGGCCATTTCCAAGGCGCGTCGCGCC 
GATGGCGTGCGCGCCGGCGGCTTCCCCGGCGCCGAGCGGATCTTTGCCCAGCAGGCGCAGGGCGTTGCCAGC 
AAGCGCGTCGGTTTCCTGCCGCAGGGGCGGATGCCGGTGCGCGAGGGCGCCGAGATCGTCGATGCCCAGGGC 
CGGGCGATCGGCAAGGTCAGCAGCGGCGGTTTCGGTCCGAGCCTCAACGCGCCGTTGGCCATGGGCTACGTG 
CCGAACGAACTGGCCGGCCTGGGCAGCGAGGTGACGGCGATGGTGCGCGGCAAGCCGGTGACCCTGGTGGTC 
AGCAAGATGCCCTTCGTGGCGCAGCGCTACTACCGCGGTTGA