ViewGene
Locus Name:
GeneID:
Location:

GeneID:1745
TrivialName: PA14_53660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53660
PAO1 Ortholog Locus:PA0821
Sequence Length:1089
Protein Length:362
Start: 4758953
Stop: 4760041
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04210.1|AE004517_5 (AE004517) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 351/361 (97%), Positives = 357/361 (98%)
Sequence:
ATGGAACAGCCATTCGATCTGGCTGCAGAGTTAGCCAAGCAACCCCATCTACTGGAAATAGCCGGCAACCTG
TTGATGAAGGGCGGCCCCGAAGACTATATCGGTGCCGTGCTTTGCCTACGCGGTACTCTCTACTTCAAAGAG
GCCCATACCCCACTGGTACGTGAGTCATTATGCCAATGCTTCGATGAGTTCAAGCGCCTAGCAGAGCCTCAC
CTCACCTGGCTCTGGCGTGAAGAGCCTGCACAAGGAAAGCCACTGACCGCATACCGTGACACCCAACCACTG
CGCGAGATGATGGGGGCAATGGATGAAGACGATCATCTCAGCTTCTGCTACACCAGCGGCAAGAAATCCCGC
GATGCAGGCGCCTGGCTGTTTGATATTTACGGCAAGCGGAGCTGGCAAGCCAAAATGGGGCATGATCTTAGT
GTTCTGGAGTTCTCCGTACCTCTGCTATATCAAGAGCGGCAGCCATTGGATTTCCTACAGCTGTTTATTGAC
TTCGCACGGCGACTAGAGCCGGAGCAGGGGTATGCGGGGCATGCCTACAATCTCTCGCCGACCAGTTGGGAC
AATGACGAGCCCTCCGAAGCCTTTATGGCGGCGCGTATGCCGGGTTTGGATGTAGGGACGGCTTGTCTGCTG
GCCAATACTCCCGAGTTCAAACCTACAAGAATCAAAACTGTCAGTTGGCTAACCCTCCTGAACAACGAGCGC
CTGGCGCTGGCCGGCGGGCTCGATGCCCTGCGTGCGCAACTGCCCTCCAGCCACTTTGCCTTCTACCGCTAC
GGCGATGGCGTGGTAATCCAGGCCGGTGCCTATCCCTATATCGCGGGTGATGCGGAAGACTCCAGACCCGCT
CCGTATGTGCTGCTGAACCACGCGCTCAAAGGCATTCGCTATGAAACCGTCGGCTCGCTACACGGCGGCTCC
CACGACGGCGAATTGCGGCTGGTGGGCTGGGCGGCCGATCAATGGCTGAAACGGCTGGATGTGGAAGACAGC
GAACTCCCCCGCTGGCGCGACAAATTGCTCAACACTGAGCCATGCTTGGACGCGACGAACTCACTGCCGGAG
CGCCCGTAG
Translation:
MEQPFDLAAELAKQPHLLEIAGNLLMKGGPEDYIGAVLCLRGTLYFKEAHTPLVRESLCQCFDEFKRLAEPH
LTWLWREEPAQGKPLTAYRDTQPLREMMGAMDEDDHLSFCYTSGKKSRDAGAWLFDIYGKRSWQAKMGHDLS
VLEFSVPLLYQERQPLDFLQLFIDFARRLEPEQGYAGHAYNLSPTSWDNDEPSEAFMAARMPGLDVGTACLL
ANTPEFKPTRIKTVSWLTLLNNERLALAGGLDALRAQLPSSHFAFYRYGDGVVIQAGAYPYIAGDAEDSRPA
PYVLLNHALKGIRYETVGSLHGGSHDGELRLVGWAADQWLKRLDVEDSELPRWRDKLLNTEPCLDATNSLPE
RP*
AnnotationID:1754GeneID:1745
AnnotatorUID: danlee
Modification Date/Time: 2004-04-22 13:01:41
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0821
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:3493




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20640




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1745
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3065
                           PA0821_tr
                           translation of PA0821
                           362
                           96.96
                           98.61
                           0
                           1886.0
     

     
     
94473
                           gb|AAG04210.1|AE004517_5
                           (AE004517) hypothetical protein PA0821 [Pseudomonas aeruginosa PAO1]
                           362
                           96.96
                           98.61
                           0
                           1886.0
     

     






      

          
GC ORFID: 44747How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0821Glimmer Score: 

          
Start: 194954Stop: 193866

          
Length: 1089


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0821 translation of PA0821Homolog Bit Score 732.0

          
Other Homologs:  t_PA0821 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAACAGCCATTCGATCTGGCTGCAGAGTTAGCCAAGCAACCCCATCTACTGGAAATAGCCGGCAACCTG 
TTGATGAAGGGCGGCCCCGAAGACTATATCGGTGCCGTGCTTTGCCTACGCGGTACTCTCTACTTCAAAGAG 
GCCCATACCCCACTGGTACGTGAGTCATTATGCCAATGCTTCGATGAGTTCAAGCGCCTAGCAGAGCCTCAC 
CTCACCTGGCTCTGGCGTGAAGAGCCTGCACAAGGAAAGCCACTGACCGCATACCGTGACACCCAACCACTG 
CGCGAGATGATGGGGGCAATGGATGAAGACGATCATCTCAGCTTCTGCTACACCAGCGGCAAGAAATCCCGC 
GATGCAGGCGCCTGGCTGTTTGATATTTACGGCAAGCGGAGCTGGCAAGCCAAAATGGGGCATGATCTTAGT 
GTTCTGGAGTTCTCCGTACCTCTGCTATATCAAGAGCGGCAGCCATTGGATTTCCTACAGCTGTTTATTGAC 
TTCGCACGGCGACTAGAGCCGGAGCAGGGGTATGCGGGGCATGCCTACAATCTCTCGCCGACCAGTTGGGAC 
AATGACGAGCCCTCCGAAGCCTTTATGGCGGCGCGTATGCCGGGTTTGGATGTAGGGACGGCTTGTCTGCTG 
GCCAATACTCCCGAGTTCAAACCTACAAGAATCAAAACTGTCAGTTGGCTAACCCTCCTGAACAACGAGCGC 
CTGGCGCTGGCCGGCGGGCTCGATGCCCTGCGTGCGCAACTGCCCTCCAGCCACTTTGCCTTCTACCGCTAC 
GGCGATGGCGTGGTAATCCAGGCCGGTGCCTATCCCTATATCGCGGGTGATGCGGAAGACTCCAGACCCGCT 
CCGTATGTGCTGCTGAACCACGCGCTCAAAGGCATTCGCTATGAAACCGTCGGCTCGCTACACGGCGGCTCC 
CACGACGGCGAATTGCGGCTGGTGGGCTGGGCGGCCGATCAATGGCTGAAACGGCTGGATGTGGAAGACAGC 
GAACTCCCCCGCTGGCGCGACAAATTGCTCAACACTGAGCCATGCTTGGACGCGACGAACTCACTGCCGGAG 
CGCCCGTAG