ViewGene
Locus Name:
GeneID:
Location:

GeneID:1744
TrivialName: PA14_69060
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69060
PAO1 Ortholog Locus:PA5230
Sequence Length:1125
Protein Length:374
Start: 6159291
Stop: 6158167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08615.1|AE004935_12 (AE004935) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 372/374 (99%), Positives = 373/374 (99%)
Sequence:
ATGCGCAGCCTGGCCAACATCTTCAACCTGGGCATCAAGGAGTTCCGCAGCCTCGGCCGCGACTACGCGATG
CTGGCACTGATCGTCTGGGCCTTCACCCTGGGCGTCTACAGTTCCGCTACCGGTATTCCGGAAACCTTGCAT
CACGCGCCGATCGCGGTGGTCGACGAGGACCGCTCGCAACTCTCGTCGCGTATCGTCAATGCCTTCCAGCCC
CCGTACTTCCGGCCGCCGGAAATGATCGGGCATGCCGAGATGGATCGCGGCATGGACGTCGGCCTGTATACC
TTCACCCTCGATATTCCGCCGGACTTCCAGCGCGACGTGTTGGCCGGGCGCAAGCCCTCGATCCAGGTCAAC
GTCGACGCGACCCAGACCGGGCAGGCGTTCTCCGGCGCGGGCTACATCCAGAACATCGTCGCCACCGAGGTG
CGCGAGTTCGTCAGCCGCTACCGCGCGGAGCCGAGCATGCCGGCGCAGATCGAGGTGCGCATGGAGTTCAAC
CCGAACCTGACCCAGGCCTGGTTCGGCGGGGTGATGGAAGTGATCAACCAGATCACCATGCTGTCGATCATC
CTCACCGGCGCCGCGCTGATCCGCGAGCGCGAGCACGGCACCGTCGAGCACCTGCTGGTGATGCCGCTGTCG
GCCTTCGAGATCATGATGGCCAAGGTCTGGTCGATGGGGCTGGTGGTGCTGGTGGCGGCGGGGCTCTCGTTG
CAGTGGGTGGTGCGTGGCTGGCTGGACGTGCCGATCAGCGGCTCGGTGGGGCTGTTCCTGCTCGGCGCCGGA
TTGCATCTGTTCGCCACCACCTCCATGGGCATATTCCTCGGCACGGTGGCGCGTTCGATGCCGCAGCTCGGA
CTGTTGACCATCCTCGTGCTGCTGCCGCTGAACATCCTTTCGGGCGGCAGCACGCCACGGGAAAGCATGCCG
GAACTGGTGCAGAACATCATGCTGGCGGCTCCGACCACGCATTTCGTCAGCCTGGCCCAGGCGATCCTGTTC
CGCGGCGCCGGTTTCGACATCGTCTGGCCGCAGTTCGCCGGCATCGTGGCGATCGGTTCGGCGTTCTTCTTC
GGCGCGCTCTGGCGTTTCCGCCGGACCATCTCGCAGATGGCCTGA
Translation:
MRSLANIFNLGIKEFRSLGRDYAMLALIVWAFTLGVYSSATGIPETLHHAPIAVVDEDRSQLSSRIVNAFQP
PYFRPPEMIGHAEMDRGMDVGLYTFTLDIPPDFQRDVLAGRKPSIQVNVDATQTGQAFSGAGYIQNIVATEV
REFVSRYRAEPSMPAQIEVRMEFNPNLTQAWFGGVMEVINQITMLSIILTGAALIREREHGTVEHLLVMPLS
AFEIMMAKVWSMGLVVLVAAGLSLQWVVRGWLDVPISGSVGLFLLGAGLHLFATTSMGIFLGTVARSMPQLG
LLTILVLLPLNILSGGSTPRESMPELVQNIMLAAPTTHFVSLAQAILFRGAGFDIVWPQFAGIVAIGSAFFF
GALWRFRRTISQMA*
AnnotationID:1753GeneID:1744
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:19
Gene Name:
Confidence Code:3
GeneProduct:putative permease of ABC transporter
Cell Localization:()
Synonyms:yhhJ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0842
Secondary Functional Category(ies):defense mechanism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD85029.1| (BX321859) putative ABC-2 type transport system permease protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 374

 Score =  519 bits (1336), Expect = e-146
 Identities = 263/374 (70%), Positives = 306/374 (81%)

>gb|AAL22445.1| (AE008865) putative ABC superfamily transport protein [Salmonella
           typhimurium LT2]
          Length = 374

 Score =  514 bits (1324), Expect = e-145
 Identities = 260/374 (69%), Positives = 305/374 (81%)

>gb|AAG58618.1|AE005573_1 (AE005573) putative transporter [Escherichia coli O157:H7 EDL933]
          Length = 375

 Score =  511 bits (1315), Expect = e-144
 Identities = 261/374 (69%), Positives = 305/374 (81%)






 
Structural Features:
COG0842, ABC-type multidrug transport system, permease component 
[Defense mechanisms]
CD-Length = 286 residues,  93.4% aligned
Score = 88.1 bits (217), Expect = 1e-18
Identities = 81/285 (28%), Positives = 118/285 (41%), Gaps = 19/285 (6%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20638




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34871




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1744_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1744
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3064
                           PA5230_tr
                           translation of PA5230
                           374
                           99.46
                           99.73
                           0
                           1892.0
     

     
     
94452
                           gb|AAG08615.1|AE004935_12
                           (AE004935) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
                           374
                           99.46
                           99.73
                           0
                           1892.0
     

     
     
94453
                           emb|CAD85029.1|
                           (BX321859) putative ABC-2 type transport system permease protein [Nitrosomonas europaea ATCC 19718]
                           374
                           70.32
                           81.81
                           0
                           1336.0
     

     
     
94456
                           gb|AAP19222.1|
                           (AE016992) putative transporter [Shigella flexneri 2a str. 2457T]
                           374
                           69.78
                           81.55
                           0
                           1316.0
     

     
     
94461
                           dbj|BAB37781.1|
                           (AP002565) putative transporter [Escherichia coli O157:H7]
                           375
                           69.60
                           81.33
                           1
                           1315.0
     

     






      

          
GC ORFID: 44746How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5230Glimmer Score: 

          
Start: 5422978Stop: 5421854

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5230 translation of PA5230Homolog Bit Score 733.0

          
Other Homologs:  t_PA5230 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCAGCCTGGCCAACATCTTCAACCTGGGCATCAAGGAGTTCCGCAGCCTCGGCCGCGACTACGCGATG 
CTGGCACTGATCGTCTGGGCCTTCACCCTGGGCGTCTACAGTTCCGCTACCGGTATTCCGGAAACCTTGCAT 
CACGCGCCGATCGCGGTGGTCGACGAGGACCGCTCGCAACTCTCGTCGCGTATCGTCAATGCCTTCCAGCCC 
CCGTACTTCCGGCCGCCGGAAATGATCGGGCATGCCGAGATGGATCGCGGCATGGACGTCGGCCTGTATACC 
TTCACCCTCGATATTCCGCCGGACTTCCAGCGCGACGTGTTGGCCGGGCGCAAGCCCTCGATCCAGGTCAAC 
GTCGACGCGACCCAGACCGGGCAGGCGTTCTCCGGCGCGGGCTACATCCAGAACATCGTCGCCACCGAGGTG 
CGCGAGTTCGTCAGCCGCTACCGCGCGGAGCCGAGCATGCCGGCGCAGATCGAGGTGCGCATGGAGTTCAAC 
CCGAACCTGACCCAGGCCTGGTTCGGCGGGGTGATGGAAGTGATCAACCAGATCACCATGCTGTCGATCATC 
CTCACCGGCGCCGCGCTGATCCGCGAGCGCGAGCACGGCACCGTCGAGCACCTGCTGGTGATGCCGCTGTCG 
GCCTTCGAGATCATGATGGCCAAGGTCTGGTCGATGGGGCTGGTGGTGCTGGTGGCGGCGGGGCTCTCGTTG 
CAGTGGGTGGTGCGTGGCTGGCTGGACGTGCCGATCAGCGGCTCGGTGGGGCTGTTCCTGCTCGGCGCCGGA 
TTGCATCTGTTCGCCACCACCTCCATGGGCATATTCCTCGGCACGGTGGCGCGTTCGATGCCGCAGCTCGGA 
CTGTTGACCATCCTCGTGCTGCTGCCGCTGAACATCCTTTCGGGCGGCAGCACGCCACGGGAAAGCATGCCG 
GAACTGGTGCAGAACATCATGCTGGCGGCTCCGACCACGCATTTCGTCAGCCTGGCCCAGGCGATCCTGTTC 
CGCGGCGCCGGTTTCGACATCGTCTGGCCGCAGTTCGCCGGCATCGTGGCGATCGGTTCGGCGTTCTTCTTC 
GGCGCGCTCTGGCGTTTCCGCCGGACCATCTCGCAGATGGCCTGA