ViewGene
Locus Name:
GeneID:
Location:

GeneID:1743
TrivialName: PA14_46220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46220
PAO1 Ortholog Locus:PA1410
Sequence Length:1092
Protein Length:363
Start: 4109928
Stop: 4108837
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04799.1|AE004570_7 (AE004570) probable periplasmic spermidine/putrescine-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 361/363 (99%), Positives = 363/363 (100%)
Sequence:
ATGCAATCGACTCGCAAGCTGCTGGCCGGCCTCGCGCTGGCCGTTTCCGCCGGGCTGGTCCAGGCCGCGCCG
GAAGTACGGATCTACAACTGGTTCGACTACATCGCCCCGGACACCCTGAAGAACTTCCAGGCGCAGACCGGC
ATCGCGCCGAAGTACGACGTCTACGACAGCAACGAGGTGCTCGAGGCCAAGCTGCTGTCCGGGCATTCCGGC
TACGACCTGGTGGTGCCCAGCGACAGCTTCCTGCCCAACTACCTGAAGGCCGAAGTGTTCCAGCCGCTGGAC
AAGAGCAAGCTGCCGAACTGGAAGAACCTCAACCCGGCCCTGCTCAAGGTGCTTGCCGGCAAGGACCCCGGC
AACCGCTACGTGATGCCCTACATGTGGGGCACCAACGGCATCGCCTACAACCTCGACAAGGTCCGCGCGGTG
CTCGGCGACGATGCGCCGCTGGACTCCTGGGACCTGGTGTTCAAGCCGGAGAACCTGGCGAAGCTGCAACAG
TGCGGCGTGGCCTTCCTCGACTCGCCCACCGAGGTGATCCCCGAGGTGCTGCACTATCTCGGCCTGTCGCCC
AACAGCCACCAACCGGAAGACTACCGCCGAGCCGAGGAGCACCTGGCGAAGCTGCGCCCGTACATCACCTAC
TTCAGTTCCTCGAAGTTCGTCAGCGACCTGGCCAACGGCAACGTCTGCGTGGCCATCGCCTGGTCCGGCGGA
GCGATGCAGGCGGCCAACCGGGCCAGGGAAGCGAAGAACGGCATACGCATCGAGTACCGCATTCCGAAGGAG
GGCGCCGCGGCCTGGTTCGACGTGCTGGCGATTCCGCGCGACGCGAAGAACGTCGAGCAGGCGCACGCCTTC
CTCAACTACCTGCTGCGCCCGGAGGTGGTGGCGCCGATCTCCGACTACGTGGCCTACGCCAACCCGAACAAG
GCGGCGGACGGTTTGATCTCGGCGGAGTTGCGCGACAATCCGAACGTCTACCCGCCGGAAGAAGTGCAGGCC
AGGCTGTATTCGGTGGAGATGCTGCCGCCGAAGCTGGAGCGGCTGCGCACGCGGACCTGGAGCAGGATCAAG
ACCGGCAAGTGA
Translation:
MQSTRKLLAGLALAVSAGLVQAAPEVRIYNWFDYIAPDTLKNFQAQTGIAPKYDVYDSNEVLEAKLLSGHSG
YDLVVPSDSFLPNYLKAEVFQPLDKSKLPNWKNLNPALLKVLAGKDPGNRYVMPYMWGTNGIAYNLDKVRAV
LGDDAPLDSWDLVFKPENLAKLQQCGVAFLDSPTEVIPEVLHYLGLSPNSHQPEDYRRAEEHLAKLRPYITY
FSSSKFVSDLANGNVCVAIAWSGGAMQAANRAREAKNGIRIEYRIPKEGAAAWFDVLAIPRDAKNVEQAHAF
LNYLLRPEVVAPISDYVAYANPNKAADGLISAELRDNPNVYPPEEVQARLYSVEMLPPKLERLRTRTWSRIK
TGK*
AnnotationID:1752GeneID:1743
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 06:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic putrescine-binding permease protein
Cell Localization:()
Synonyms:potF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB34357.1| (AP002553) periplasmic putrescine-binding permease protein
           [Escherichia coli O157:H7]
          Length = 370

 Score =  458 bits (1179), Expect = e-128
 Identities = 217/359 (60%), Positives = 285/359 (79%), Gaps = 2/359 (0%)

>gb|AAL19813.1| (AE008736) ABC superfamily (peri_perm), putrescine transporter
           [Salmonella typhimurium LT2]
          Length = 370

 Score =  455 bits (1171), Expect = e-127
 Identities = 216/359 (60%), Positives = 281/359 (78%), Gaps = 2/359 (0%)

>gb|AAP16313.1| (AE016980) periplasmic putrescine-binding protein; permease protein
           [Shigella flexneri 2a str. 2457T]
          Length = 370

 Score =  455 bits (1171), Expect = e-127
 Identities = 215/359 (59%), Positives = 284/359 (79%), Gaps = 2/359 (0%)








 
Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism]
CD-Length = 363 residues,  97.0% aligned
Score =  345 bits (887), Expect = 4e-96
Identities = 174/361 (48%), Positives = 223/361 (61%), Gaps = 13/361 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:3489




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20636




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37428




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1743_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1743
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3059
                           PA1410_tr
                           translation of PA1410
                           363
                           99.44
                           99.99
                           0
                           1891.0
     

     
     
94398
                           gb|AAG04799.1|AE004570_7
                           (AE004570) probable periplasmic spermidine/putrescine-binding protein [Pseudomonas aeruginosa PAO1]
                           363
                           99.44
                           99.99
                           0
                           1891.0
     

     
     
94400
                           dbj|BAB34357.1|
                           (AP002553) periplasmic putrescine-binding permease protein [Escherichia coli O157:H7]
                           370
                           59.18
                           77.83
                           7
                           1180.0
     

     
     
94399
                           gb|AAG55230.1|AE005266_9
                           (AE005266) periplasmic putrescine-binding protein; permease protein [Escherichia coli O157:H7 EDL933]
                           370
                           59.18
                           77.83
                           7
                           1180.0
     

     
     
3061
                           PA0301_tr
                           translation of PA0301
                           367
                           59.12
                           75.47
                           6
                           1139.0
     

     






      

          
GC ORFID: 44745How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1410Glimmer Score: 

          
Start: 843981Stop: 845072

          
Length: 1092


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1410 translation of PA1410Homolog Bit Score 733.0

          
Other Homologs:  t_PA0300 (ORF: BLASTX 446.0), t_PA0301 (ORF: BLASTX 442.0), t_PA2711 (ORF: BLASTX 428.0), psyr_15may02_Scaffold6_revised_gene6512 (ORF: BLASTX 417.0), psyr_15may02_Scaffold6_revised_gene6511 (ORF: BLASTX 406.0), psyr_15may02_Scaffold7_revised_gene7441 (ORF: BLASTX 388.0), t_PA2592 (ORF: BLASTX 378.0), t_PA1410 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATCGACTCGCAAGCTGCTGGCCGGCCTCGCGCTGGCCGTTTCCGCCGGGCTGGTCCAGGCCGCGCCG 
GAAGTACGGATCTACAACTGGTTCGACTACATCGCCCCGGACACCCTGAAGAACTTCCAGGCGCAGACCGGC 
ATCGCGCCGAAGTACGACGTCTACGACAGCAACGAGGTGCTCGAGGCCAAGCTGCTGTCCGGGCATTCCGGC 
TACGACCTGGTGGTGCCCAGCGACAGCTTCCTGCCCAACTACCTGAAGGCCGAAGTGTTCCAGCCGCTGGAC 
AAGAGCAAGCTGCCGAACTGGAAGAACCTCAACCCGGCCCTGCTCAAGGTGCTTGCCGGCAAGGACCCCGGC 
AACCGCTACGTGATGCCCTACATGTGGGGCACCAACGGCATCGCCTACAACCTCGACAAGGTCCGCGCGGTG 
CTCGGCGACGATGCGCCGCTGGACTCCTGGGACCTGGTGTTCAAGCCGGAGAACCTGGCGAAGCTGCAACAG 
TGCGGCGTGGCCTTCCTCGACTCGCCCACCGAGGTGATCCCCGAGGTGCTGCACTATCTCGGCCTGTCGCCC 
AACAGCCACCAACCGGAAGACTACCGCCGAGCCGAGGAGCACCTGGCGAAGCTGCGCCCGTACATCACCTAC 
TTCAGTTCCTCGAAGTTCGTCAGCGACCTGGCCAACGGCAACGTCTGCGTGGCCATCGCCTGGTCCGGCGGA 
GCGATGCAGGCGGCCAACCGGGCCAGGGAAGCGAAGAACGGCATACGCATCGAGTACCGCATTCCGAAGGAG 
GGCGCCGCGGCCTGGTTCGACGTGCTGGCGATTCCGCGCGACGCGAAGAACGTCGAGCAGGCGCACGCCTTC 
CTCAACTACCTGCTGCGCCCGGAGGTGGTGGCGCCGATCTCCGACTACGTGGCCTACGCCAACCCGAACAAG 
GCGGCGGACGGTTTGATCTCGGCGGAGTTGCGCGACAATCCGAACGTCTACCCGCCGGAAGAAGTGCAGGCC 
AGGCTGTATTCGGTGGAGATGCTGCCGCCGAAGCTGGAGCGGCTGCGCACGCGGACCTGGAGCAGGATCAAG 
ACCGGCAAGTGA