ViewGene
Locus Name:
GeneID:
Location:

GeneID:1740
TrivialName: PA14_19900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19900
PAO1 Ortholog Locus:PA3417
Sequence Length:1098
Protein Length:365
Start: 1714667
Stop: 1715764
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06805.1|AE004762_11 (AE004762) probable pyruvate dehydrogenase E1 component, alpha subunit [Pseudomonas aeruginosa PAO1]
Identities = 363/365 (99%), Positives = 364/365 (99%)
Sequence:
ATGGTTCACAACCGGATCGACCCGCCTTTCACCCGCTACCTCGACAGTGACGGTCGGCCCCTCGGCGAGTTG
CCCGCCTGGGCCGGCGACAGCGATGCGCTGGTCGGCCTCTACCGGCAGATGCTCCTGACCCGCCTGTTCGAC
CAGAAGGCGGTGGCCCTCCAGCGTACCGGGCGGATCGGCACCTATGCGCCAACCCTCGGCCAGGAAGCCATC
GGCGTGGCCATCGGCAGCCAGATGCGCGCCGAAGACGTGCTGGTGCCCTATTACCGCGATACCGCCGTGCAA
TTGATGCGCGGTGTGCGCATGGAGGACATCCTCCTCTACTGGGGCGGCGACGAGCGCGGCAGCGACTACGCC
GAACCGCTGGCGGCGCAGGACTTTCCCATCTGCGTGCCGATCGCCACCCAGGCCCTGCATGCCTGCGGGGTC
GCCTCGGCGTTCCGCATCCGCGGCGAGCACCGGGTGGCGGTGACCACCTGCGGCGACGGCGCCACCAGCAAG
GGCGATTTCCTCGAGGCGCTGAACGTGGCGGGCGCCTGGCAGTTGCCGGTGCTCTTCGTGGTCAACAACAAC
CAGTGGGCGATCTCGGTGCCGCGGCGCATCCAGTGCGGCGCGCCGACCCTGGCGGAGAAGGCGGTGGGTGCC
GGCTTCCCCGGCGAACAGGTGGACGGCAACGACGTGCTGGCGGTCGCCGAACGCGTCCGCGCGGCCCTGGAG
CGCGCGCGCCAGGGCAAGGGGCCGACCCTGCTGGAGTGCATCAGCTATCGCCTGTGCGACCACACCACGGCC
GACGACGCCAGCCGCTACCGTTCCGCCGAGGAGGTCAACCAGGCCTGGCGCGAGGAGCCGATCAAGCGCCTG
CGCGCCTTCCTCGCCGGCCGCGGCCAGTGGGACGAGGAGCGCGAGCAGGCGCTGGTGGGTGAGTGCCAGGCG
CGGGTGCAGGAGGCGGTGGAGCGTTTCGAGACGTTCGCCGCGCAGGCGCCGCAGGCACTGTTCGAGCATGTC
TACGCGCGCTGGCCGGCGGCCCTGGAGGAGCAGCGCGAGCAATTGCTGGAACGCGCCGCGCGGCGGCAGGGA
GGGGCCGAACATGAATGA
Translation:
MVHNRIDPPFTRYLDSDGRPLGELPAWAGDSDALVGLYRQMLLTRLFDQKAVALQRTGRIGTYAPTLGQEAI
GVAIGSQMRAEDVLVPYYRDTAVQLMRGVRMEDILLYWGGDERGSDYAEPLAAQDFPICVPIATQALHACGV
ASAFRIRGEHRVAVTTCGDGATSKGDFLEALNVAGAWQLPVLFVVNNNQWAISVPRRIQCGAPTLAEKAVGA
GFPGEQVDGNDVLAVAERVRAALERARQGKGPTLLECISYRLCDHTTADDASRYRSAEEVNQAWREEPIKRL
RAFLAGRGQWDEEREQALVGECQARVQEAVERFETFAAQAPQALFEHVYARWPAALEEQREQLLERAARRQG
GAEHE*
AnnotationID:1749GeneID:1740
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 12:12:24
Gene Name:
Confidence Code:3
GeneProduct:putative pyruvate dehydrogenase E1 component, alpha subunit
Cell Localization:()
Synonyms:PA3417
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00676,COG1071
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC61990.1| (AP005086) putative pyruvate dehydrogenase E1 component, alpha
           subunit [Vibrio parahaemolyticus]
          Length = 364

 Score =  421 bits (1083), Expect = e-117
 Identities = 200/356 (56%), Positives = 258/356 (72%), Gaps = 4/356 (1%)

>gb|AAM39748.1| (AE012140) pyruvate dehydrogenase E1 alpha subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 362

 Score =  352 bits (902), Expect = 3e-96
 Identities = 179/350 (51%), Positives = 236/350 (67%), Gaps = 2/350 (0%)

>gb|AAD34202.1|AF068743_1 (AF068743) pyruvate decarboxylase E1 alpha subunit [Haloferax
           volcanii]
          Length = 368

 Score =  267 bits (683), Expect = 7e-71
 Identities = 158/357 (44%), Positives = 212/357 (59%), Gaps = 11/357 (3%)






 
Structural Features:
pfam00676, E1_dh, Dehydrogenase E1 component.
CD-Length = 302 residues,  96.7% aligned
Score =  261 bits (669), Expect = 7e-71
Identities = 113/292 (38%), Positives = 162/292 (55%), Gaps = 9/292 (3%)

COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex, 
dehydrogenase (E1) component, eukaryotic type, alpha subunit 
[Energy production and conversion]
CD-Length = 358 residues, 100.0% aligned
Score =  376 bits (967), Expect = 2e-105
Identities = 161/358 (44%), Positives = 205/358 (57%), Gaps = 12/358 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20630




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32149




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1740_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1740
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3055
                           PA3417_tr
                           translation of PA3417
                           365
                           99.45
                           99.72
                           0
                           1894.0
     

     
     
94284
                           gb|AAG06805.1|AE004762_11
                           (AE004762) probable pyruvate dehydrogenase E1 component, alpha subunit [Pseudomonas aeruginosa PAO1]
                           365
                           99.45
                           99.72
                           0
                           1894.0
     

     
     
94286
                           dbj|BAC97047.1|
                           (AP005348) putative pyruvate dehydrogenase E1 component, alpha subunit [Vibrio vulnificus YJ016]
                           368
                           55.97
                           70.38
                           7
                           1074.0
     

     
     
94287
                           gb|AAO07422.1|AE016809_184
                           (AE016809) Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase component, eukaryotic type, alpha subunit [Vibrio vulnificus CMCP6]
                           368
                           55.97
                           70.38
                           7
                           1072.0
     

     
     
94285
                           dbj|BAC61990.1|
                           (AP005086) putative pyruvate dehydrogenase E1 component, alpha subunit [Vibrio parahaemolyticus]
                           368
                           54.89
                           70.92
                           7
                           1078.0
     

     






      

          
GC ORFID: 44742How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3417Glimmer Score: 

          
Start: 3239265Stop: 3238168

          
Length: 1098


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3417 translation of PA3417Homolog Bit Score 734.0

          
Other Homologs:  t_PA3417 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTTCACAACCGGATCGACCCGCCTTTCACCCGCTACCTCGACAGTGACGGTCGGCCCCTCGGCGAGTTG 
CCCGCCTGGGCCGGCGACAGCGATGCGCTGGTCGGCCTCTACCGGCAGATGCTCCTGACCCGCCTGTTCGAC 
CAGAAGGCGGTGGCCCTCCAGCGTACCGGGCGGATCGGCACCTATGCGCCAACCCTCGGCCAGGAAGCCATC 
GGCGTGGCCATCGGCAGCCAGATGCGCGCCGAAGACGTGCTGGTGCCCTATTACCGCGATACCGCCGTGCAA 
TTGATGCGCGGTGTGCGCATGGAGGACATCCTCCTCTACTGGGGCGGCGACGAGCGCGGCAGCGACTACGCC 
GAACCGCTGGCGGCGCAGGACTTTCCCATCTGCGTGCCGATCGCCACCCAGGCCCTGCATGCCTGCGGGGTC 
GCCTCGGCGTTCCGCATCCGCGGCGAGCACCGGGTGGCGGTGACCACCTGCGGCGACGGCGCCACCAGCAAG 
GGCGATTTCCTCGAGGCGCTGAACGTGGCGGGCGCCTGGCAGTTGCCGGTGCTCTTCGTGGTCAACAACAAC 
CAGTGGGCGATCTCGGTGCCGCGGCGCATCCAGTGCGGCGCGCCGACCCTGGCGGAGAAGGCGGTGGGTGCC 
GGCTTCCCCGGCGAACAGGTGGACGGCAACGACGTGCTGGCGGTCGCCGAACGCGTCCGCGCGGCCCTGGAG 
CGCGCGCGCCAGGGCAAGGGGCCGACCCTGCTGGAGTGCATCAGCTATCGCCTGTGCGACCACACCACGGCC 
GACGACGCCAGCCGCTACCGTTCCGCCGAGGAGGTCAACCAGGCCTGGCGCGAGGAGCCGATCAAGCGCCTG 
CGCGCCTTCCTCGCCGGCCGCGGCCAGTGGGACGAGGAGCGCGAGCAGGCGCTGGTGGGTGAGTGCCAGGCG 
CGGGTGCAGGAGGCGGTGGAGCGTTTCGAGACGTTCGCCGCGCAGGCGCCGCAGGCACTGTTCGAGCATGTC 
TACGCGCGCTGGCCGGCGGCCCTGGAGGAGCAGCGCGAGCAATTGCTGGAACGCGCCGCGCGGCGGCAGGGA 
GGGGCCGAACATGAATGA