ViewGene

Locus Name:
GeneID:
Location:

GeneID:174
TrivialName: PA14_00050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00050
PAO1 Ortholog Locus:PA0004
Sequence Length:2421
Protein Length:806
Start: 4275
Stop: 6695
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03394.1|AE004440_4 (AE004440) DNA gyrase subunit B [Pseudomonas aeruginosa PAO1]
Identities = 806/806 (100%), Positives = 806/806 (100%)
Sequence:
ATGAGCGAGAACAACACGTACGACTCTTCCAGCATCAAGGTGCTGAAGGGGCTGGATGCCGTACGCAAGCGC
CCCGGCATGTACATCGGCGACACCGACGATGGCACCGGTCTGCACCACATGGTGTTCGAGGTGGTGGATAAC
TCCATCGACGAAGCGCTGGCCGGTTACTGCAGCGAAATCAGCATCACCATCCATACGGATGAGTCGATCACT
GTCCGCGACAATGGACGCGGTATTCCGGTGGATATCCACAAGGAAGAAGGGGTTTCTGCGGCGGAAGTGATC
ATGACCGTCCTCCACGCCGGCGGCAAGTTCGACGACAACACCTACAAAGTGTCCGGCGGCTTGCACGGTGTG
GGCGTCTCGGTGGTGAACGCGCTGTCCCATGAGCTGCGCCTGACCATCCGTCGCCACAACAAGGTCTGGGAA
CAGGTCTACCACCACGGCGTTCCGCAGTTCCCACTGCGCGAAGTGGGCGAGACCGATGGCTCCGGTACCGAA
GTTCACTTCAAGCCGTCCCCGGAGACCTTCAGCAACATCCACTTCAGTTGGGACATCCTGGCCAAGCGCATC
CGCGAACTGTCCTTCCTCAACTCCGGCGTCGGCATCCTGCTGCGCGACGAGCGTACCGGCAAGGAGGAGCTG
TTCAAGTACGAAGGCGGTCTGAAGGCCTTCGTCGAGTACTTGAACACCAACAAGACCGCGGTGAACGAGGTA
TTCCACTTCAACGTCCAGCGTGAAGAGGACGGCGTGGGTGTGGAAGTCGCCTTGCAGTGGAACGACAGCTTC
AACGAGAACCTGCTCTGCTTCACCAACAACATCCCGCAGCGTGATGGCGGCACCCACCTGGCCGGTTTCCGT
TCGGCGCTGACGCGTAACCTGAACAACTACATCGAGGCCGAAGGCCTGGCGAAGAAATTCAAGATCGCCACC
ACCGGCGACGATGCCCGCGAAGGCCTCACCGCGATCATCTCGGTGAAGGTACCGGACCCGAAGTTCAGCTCG
CAGACCAAGGACAAGCTGGTCTCCTCCGAGGTGAAGACCGCGGTGGAACAGGAGATGGGCAAGTACTTCGCC
GACTTCCTGCTGGAGAATCCCAACGAAGCCAAGGCCGTGGTCGGCAAGATGATCGACGCCGCCCGTGCCCGT
GAAGCCGCGCGCAAGGCGCGCGAGATGACCCGCCGCAAGGGCGCGCTGGACATCGCCGGCCTGCCCGGCAAA
CTGGCCGATTGCCAGGAAAAGGACCCGGCGCTCTCCGAACTGTACATCGTGGAGGGTGACTCCGCGGGCGGT
TCCGCCAAGCAGGGCCGCAATCGCCGGACCCAGGCGATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAG
AAGGCACGCTTCGACAAGATGCTCTCCTCCCAGGAGGTCGGTACGCTGATCACCGCCCTGGGCTGTGGCATC
GGCCGCGAGGAGTACAACATCGACAAGCTGCGCTACCACAACATCATCATCATGACCGATGCTGACGTCGAC
GGTTCGCACATCCGCACCCTGCTGTTGACCTTCTTCTTCCGCCAGATGCCCGAGCTGATCGAGCGTGGCTAC
ATCTACATCGCCCAGCCCCCGTTGTACAAGGTCAAGCGTGGCAAGCAGGAGCAGTACATCAAGGACGACCAG
GCCATGGAAGAGTACATGACCCAGTCGGCCCTGGAAGACGCCAGCCTGCACGTCAACGAGCACGCTCCGGGC
CTGTCCGGGGCAGCGCTGGAGAAACTGGTCAACGAGTATCGCGGGGTGATCGCCACCCTCAAGCGCCTGTCG
CGCCTGTACCCCCAGGAGCTGACCGAGCACTTCATCTACCTGCCTACCGTGTCGGTGGACGACCTGGCTAAC
GAGTCGGCCATGCAGGGCTGGTTGGAGAAGTTCCAGGCGCGCCTGACCGCCGCCGAGAAGTCTGGCCTGACC
TACAAGGCCAGCCTGCGCGAAGACCGCGAGCGCCACCTGTGGCTGCCCGAGGTGGAACTGGTGGCCCACGGC
CTGTCCAGCTACGTCACCTTCAACCGTGACTTCTTCGCCAGCAATGACTACCGCTCGGTGTCGCTGCTCGGC
GACCAGCTGAACAGCCTGCTGGAAGACGGCGCCTACGTGCAGAAGGGTGAGCGCAAGCGCCCGATCAGCGCC
TTCAAGGACGGCCTGGACTGGCTGATGGCCGAAGGTACCAAGCGCCACAGCATCCAGCGATACAAGGGGTTG
GGCGAGATGAACCCTGAGCAGCTGTGGGAAACCACCATGGATCCGAACGTCCGGCGCATGCTCAAGGTGACC
ATCGAGGACGCCATCGCCGCCGACCAGATCTTCAACACCCTGATGGGCGATGCCGTGGAGCCGCGCCGCGAC
TTCATCGAAAGCAACGCGCTGGCGGTGTCGAACCTGGACGTGTGA
Translation:
MSENNTYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSEISITIHTDESIT
VRDNGRGIPVDIHKEEGVSAAEVIMTVLHAGGKFDDNTYKVSGGLHGVGVSVVNALSHELRLTIRRHNKVWE
QVYHHGVPQFPLREVGETDGSGTEVHFKPSPETFSNIHFSWDILAKRIRELSFLNSGVGILLRDERTGKEEL
FKYEGGLKAFVEYLNTNKTAVNEVFHFNVQREEDGVGVEVALQWNDSFNENLLCFTNNIPQRDGGTHLAGFR
SALTRNLNNYIEAEGLAKKFKIATTGDDAREGLTAIISVKVPDPKFSSQTKDKLVSSEVKTAVEQEMGKYFA
DFLLENPNEAKAVVGKMIDAARAREAARKAREMTRRKGALDIAGLPGKLADCQEKDPALSELYIVEGDSAGG
SAKQGRNRRTQAILPLKGKILNVEKARFDKMLSSQEVGTLITALGCGIGREEYNIDKLRYHNIIIMTDADVD
GSHIRTLLLTFFFRQMPELIERGYIYIAQPPLYKVKRGKQEQYIKDDQAMEEYMTQSALEDASLHVNEHAPG
LSGAALEKLVNEYRGVIATLKRLSRLYPQELTEHFIYLPTVSVDDLANESAMQGWLEKFQARLTAAEKSGLT
YKASLREDRERHLWLPEVELVAHGLSSYVTFNRDFFASNDYRSVSLLGDQLNSLLEDGAYVQKGERKRPISA
FKDGLDWLMAEGTKRHSIQRYKGLGEMNPEQLWETTMDPNVRRMLKVTIEDAIAADQIFNTLMGDAVEPRRD
FIESNALAVSNLDV*
AnnotationID:184GeneID:174
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 10:10:17
Gene Name:gyrB
Confidence Code:2
GeneProduct:DNA gyrase subunit B
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:DNA topoisomerase chain B
Functional Category Confidence Code:5
COGs:COG0187,smart00433
Secondary Functional Category(ies):
EC Number:5.99.1.3
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53561.1| (AE016856) DNA gyrase, subunit B [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 805

 Score = 1416 bits (3665), Expect = 0.0
 Identities = 696/805 (86%), Positives = 757/805 (94%), Gaps = 1/805 (0%)

>gb|AAN65647.1|AE016191_4 (AE016774) DNA gyrase, subunit B [Pseudomonas putida KT2440]
          Length = 806

 Score = 1388 bits (3593), Expect = 0.0
 Identities = 686/806 (85%), Positives = 752/806 (93%), Gaps = 2/806 (0%)

>gb|AAN83054.1|AE016769_169 (AE016769) DNA gyrase subunit B [Escherichia coli CFT073]
          Length = 805

 Score = 1127 bits (2915), Expect = 0.0
 Identities = 552/805 (68%), Positives = 667/805 (82%), Gaps = 4/805 (0%)
Structural Features:
COG0187, GyrB, Type IIA topoisomerase 
(DNA gyrase/topo II, topoisomerase IV), B subunit 
[DNA replication, recombination, and repair]
CD-Length = 635 residues,  87.9% aligned
Score =  900 bits (2328), Expect = 0.0
Identities = 362/562 (64%), Positives = 446/562 (79%), Gaps = 7/562 (1%)

smart00433, TOP2c, TopoisomeraseII; 
Eukaryotic DNA topoisomerase II, GyrB, ParE
CD-Length = 594 residues,  87.7% aligned
Score =  678 bits (1751), Expect = 0.0
Identities = 281/526 (53%), Positives = 366/526 (69%), Gaps = 7/526 (1%)
Genomic Context:
Comment:
ReferenceID:351
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17493
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33369
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:174_cdd.html
URL:
ReferenceID:35532
Author/Investigator(s): Greene SR, Stamm LV.
Title: Molecular characterization of the gyrB region of the oral spirochete, Treponema denticola.
PubMed: 10940564
MedLine:
Source:
Gene. 2000 Aug 8;253(2):259-69.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=10940564
ReferenceID:35533
Author/Investigator(s): Stamm LV, Greene SR, Barnes NY.
Title: Identification and characterization of the gyrB gene from Treponema pallidum subsp. pallidum.
PubMed: 9252582
MedLine:
Source:
FEMS Microbiol Lett. 1997 Aug 1;153(1):129-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9252582
ReferenceID:35534
Author/Investigator(s): Revel-Viravau V, Truong QC, Moreau N, Jarlier V, Sougakoff W.
Title: Sequence analysis, purification, and study of inhibition by 4-quinolones of the DNA gyrase from Mycobacterium smegmatis.
PubMed: 8878580
MedLine:
Source:
Antimicrob Agents Chemother. 1996 Sep;40(9):2054-61.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8878580
ReferenceID:35535
Author/Investigator(s): Forsyth MH, Sayed AS, Geary SJ.
Title: Sequence and transcriptional analysis of the genes encoding the class-II topoisomerase of Mycoplasma gallisepticum.
PubMed: 7557470
MedLine:
Source:
Gene. 1995 Sep 22;163(1):161-2.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7557470
ReferenceID:35536
Author/Investigator(s): Brockbank SM, Barth PT.
Title: Cloning, sequencing, and expression of the DNA gyrase genes from Staphylococcus aureus.
PubMed: 8388872
MedLine:
Source:
J Bacteriol. 1993 Jun;175(11):3269-77.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8388872
ReferenceID:35542
Author/Investigator(s): Clark MA, Baumann L, Baumann P.
Title: Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.
PubMed: 9516544
MedLine:
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544
ReferenceID:35548
Author/Investigator(s): Fsihi H, De Rossi E, Salazar L, Cantoni R, Labo M, Riccardi G, Takiff HE, Eiglmeier K, Bergh S, Cole ST.
Title: Gene arrangement and organization in a approximately 76 kb fragment encompassing the oriC region of the chromosome of Mycobacterium leprae.
PubMed: 8969512
MedLine:
Source:
Microbiology. 1996 Nov;142 ( Pt 11):3147-61.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8969512
Homologs By Global Alignment
Gene ID:174

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
309 PA0004_tr translation of PA0004 806 99.99 99.99 0 4145.0
19812 gb|AAG03394.1|AE004440_4 (AE004440) DNA gyrase subunit B [Pseudomonas aeruginosa PAO1] 806 99.99 99.99 0 4145.0
19813 dbj|BAA85765.1| (AB005881) DNA gyrase subunit B [Pseudomonas aeruginosa] 807 98.76 98.76 1 4080.0
19814 gb|AAO53561.1| (AE016856) DNA gyrase, subunit B [Pseudomonas syringae pv. tomato str. DC3000] 806 86.35 93.92 1 3666.0
19815 gb|AAN65647.1|AE016191_4 (AE016774) DNA gyrase, subunit B [Pseudomonas putida KT2440] 807 85.00 93.18 2 3596.0
GC ORFID: 43176How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0004Glimmer Score:
Start: 5805612Stop: 5808032
Length: 2421
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0004 translation of PA0004Homolog Bit Score 1601.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene2969 (ORF: BLASTX 1420.0), t_PA0004 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGAGAACAACACGTACGACTCTTCCAGCATCAAGGTGCTGAAGGGGCTGGATGCCGTACGCAAGCGC
CCCGGCATGTACATCGGCGACACCGACGATGGCACCGGTCTGCACCACATGGTGTTCGAGGTGGTGGATAAC
TCCATCGACGAAGCGCTGGCCGGTTACTGCAGCGAAATCAGCATCACCATCCATACGGATGAGTCGATCACT
GTCCGCGACAATGGACGCGGTATTCCGGTGGATATCCACAAGGAAGAAGGGGTTTCTGCGGCGGAAGTGATC
ATGACCGTCCTCCACGCCGGCGGCAAGTTCGACGACAACACCTACAAAGTGTCCGGCGGCTTGCACGGTGTG
GGCGTCTCGGTGGTGAACGCGCTGTCCCATGAGCTGCGCCTGACCATCCGTCGCCACAACAAGGTCTGGGAA
CAGGTCTACCACCACGGCGTTCCGCAGTTCCCACTGCGCGAAGTGGGCGAGACCGATGGCTCCGGTACCGAA
GTTCACTTCAAGCCGTCCCCGGAGACCTTCAGCAACATCCACTTCAGTTGGGACATCCTGGCCAAGCGCATC
CGCGAACTGTCCTTCCTCAACTCCGGCGTCGGCATCCTGCTGCGCGACGAGCGTACCGGCAAGGAGGAGCTG
TTCAAGTACGAAGGCGGTCTGAAGGCCTTCGTCGAGTACTTGAACACCAACAAGACCGCGGTGAACGAGGTA
TTCCACTTCAACGTCCAGCGTGAAGAGGACGGCGTGGGTGTGGAAGTCGCCTTGCAGTGGAACGACAGCTTC
AACGAGAACCTGCTCTGCTTCACCAACAACATCCCGCAGCGTGATGGCGGCACCCACCTGGCCGGTTTCCGT
TCGGCGCTGACGCGTAACCTGAACAACTACATCGAGGCCGAAGGCCTGGCGAAGAAATTCAAGATCGCCACC
ACCGGCGACGATGCCCGCGAAGGCCTCACCGCGATCATCTCGGTGAAGGTACCGGACCCGAAGTTCAGCTCG
CAGACCAAGGACAAGCTGGTCTCCTCCGAGGTGAAGACCGCGGTGGAACAGGAGATGGGCAAGTACTTCGCC
GACTTCCTGCTGGAGAATCCCAACGAAGCCAAGGCCGTGGTCGGCAAGATGATCGACGCCGCCCGTGCCCGT
GAAGCCGCGCGCAAGGCGCGCGAGATGACCCGCCGCAAGGGCGCGCTGGACATCGCCGGCCTGCCCGGCAAA
CTGGCCGATTGCCAGGAAAAGGACCCGGCGCTCTCCGAACTGTACATCGTGGAGGGTGACTCCGCGGGCGGT
TCCGCCAAGCAGGGCCGCAATCGCCGGACCCAGGCGATCCTGCCGCTCAAGGGCAAGATCCTCAACGTCGAG
AAGGCACGCTTCGACAAGATGCTCTCCTCCCAGGAGGTCGGTACGCTGATCACCGCCCTGGGCTGTGGCATC
GGCCGCGAGGAGTACAACATCGACAAGCTGCGCTACCACAACATCATCATCATGACCGATGCTGACGTCGAC
GGTTCGCACATCCGCACCCTGCTGTTGACCTTCTTCTTCCGCCAGATGCCCGAGCTGATCGAGCGTGGCTAC
ATCTACATCGCCCAGCCCCCGTTGTACAAGGTCAAGCGTGGCAAGCAGGAGCAGTACATCAAGGACGACCAG
GCCATGGAAGAGTACATGACCCAGTCGGCCCTGGAAGACGCCAGCCTGCACGTCAACGAGCACGCTCCGGGC
CTGTCCGGGGCAGCGCTGGAGAAACTGGTCAACGAGTATCGCGGGGTGATCGCCACCCTCAAGCGCCTGTCG
CGCCTGTACCCCCAGGAGCTGACCGAGCACTTCATCTACCTGCCTACCGTGTCGGTGGACGACCTGGCTAAC
GAGTCGGCCATGCAGGGCTGGTTGGAGAAGTTCCAGGCGCGCCTGACCGCCGCCGAGAAGTCTGGCCTGACC
TACAAGGCCAGCCTGCGCGAAGACCGCGAGCGCCACCTGTGGCTGCCCGAGGTGGAACTGGTGGCCCACGGC
CTGTCCAGCTACGTCACCTTCAACCGTGACTTCTTCGCCAGCAATGACTACCGCTCGGTGTCGCTGCTCGGC
GACCAGCTGAACAGCCTGCTGGAAGACGGCGCCTACGTGCAGAAGGGTGAGCGCAAGCGCCCGATCAGCGCC
TTCAAGGACGGCCTGGACTGGCTGATGGCCGAAGGTACCAAGCGCCACAGCATCCAGCGATACAAGGGGTTG
GGCGAGATGAACCCTGAGCAGCTGTGGGAAACCACCATGGATCCGAACGTCCGGCGCATGCTCAAGGTGACC
ATCGAGGACGCCATCGCCGCCGACCAGATCTTCAACACCCTGATGGGCGATGCCGTGGAGCCGCGCCGCGAC
TTCATCGAAAGCAACGCGCTGGCGGTGTCGAACCTGGACGTGTGA