ViewGene
Locus Name:
GeneID:
Location:

GeneID:1739
TrivialName: PA14_25940
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25940
PAO1 Ortholog Locus:PA2946
Sequence Length:1095
Protein Length:364
Start: 2263443
Stop: 2262349
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06334.1|AE004721_2 (AE004721) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 359/364 (98%), Positives = 361/364 (99%)
Sequence:
GTGACGCTCTCCGAGCCAGTCCGGCGCTGCCCCCGCAACGGTAAGCGCATCGCGCGCGAGCCCGGAGACCGG
CCTGGAACCTTTCGTTTGATTCACCCGCGGTGGGCGGGCGCAAGCGTGAAGCGGGCCGTCCGGTCCCGTTCC
TCGTGCGTACTCCTCTGCCACGCCCATGCCAATCCAGAGGGAACGCACCATGTCCAGCAGCACCCTGGCGCA
CGCCAGCTCCACCACCTCCCTGTCGAAGCGACTGAGCCTGGCCATCGGCGCCGGCCTGCTCGGCGCGCTGCT
GGTCTATTTCGCCGGTTTCTCGCACATCGACGCGGTACACAACGCCGCCCACGATACCCGGCACAGCTCCGG
CTTCCCCTGCCACTGAGTCGCGAGAGAACCAGAATGATCAAGCGCATCGCCCAGACCGCCGGCTTCGCCGGC
CTGCTCGCCGCCCTGCTGCTGACCCTGCTGCAGATTCTCTGGGTCACCCCGCTGATCCTCGAGGCGGAGACC
TACGAGAAGAGCGAGCCGGTCGCGACCCAGCCCCACGAACACGCCCCCGGCGTCGCCGCCCATGTCCACGAC
GAGGAGGCCTGGGAGCCGGAGGACGGCTGGCAGCGTACCCTCTCCACCACCGGCGGCAACCTGGTGGTGGCG
GTCGGCTTCGCCCTGATGCTCGCCGGCCTCTTCACCCTGCGCGCGCCGGGCCAGACCTGGCAGGGCCTGCTC
TGGGGCCTGGCCGGCTACGCGGTGTTCTGCCTTGCGCCGTCGCTGGGCCTGCCGCCGGAGCTGCCGGGTACC
GCCGCGGCCGACCTGGTGCAACGCCAGTACTGGTGGATCGCCACCGCCGCCGCCACCGCGGTGGGCCTGGCC
CTGCTGGTGTTCGGCGGCAACTGGCCGCTGAAGCTGGTCGGCGCCGTCCTGCTGGCGCTGCCGCACCTGTTC
GGCGCGCCGCAGCCCGAGGTCCATGCCAGCCTGGCGCCGGAAGCCCTGGCCCAGCGTTTCGTGATCGCCTCG
CTGGTCAGCAATGCGCTGTTCTGGGCCGCCCTCGGCCTGGCCGCTGCCTGGCTGTTCCGGCGCAACCGGGGC
GGCGTCGACGCCTGA
Translation:
MTLSEPVRRCPRNGKRIAREPGDRPGTFRLIHPRWAGASVKRAVRSRSSCVLLCHAHANPEGTHHVQQHPGA
RQLHHLPVEATEPGHRRRPARRAAGLFRRFLAHRRGTQRRPRYPAQLRLPLPLSRERTRMIKRIAQTAGFAG
LLAALLLTLLQILWVTPLILEAETYEKSEPVATQPHEHAPGVAAHVHDEEAWEPEDGWQRTLSTTGGNLVVA
VGFALMLAGLFTLRAPGQTWQGLLWGLAGYAVFCLAPSLGLPPELPGTAAADLVQRQYWWIATAAATAVGLA
LLVFGGNWPLKLVGAVLLALPHLFGAPQPEVHASLAPEALAQRFVIASLVSNALFWAALGLAAAWLFRRNRG
GVDA*
AnnotationID:1748GeneID:1739
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:29
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2946
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5446
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56639.1| (AE016867) membrane protein, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 240

 Score =  337 bits (864), Expect = 7e-92
 Identities = 170/235 (72%), Positives = 190/235 (80%), Gaps = 5/235 (2%)








 
Structural Features:
COG5446, Predicted integral membrane protein
CD-Length = 233 residues, 100.0% aligned
Score =  326 bits (838), Expect = 2e-90
Identities = 154/236 (65%), Positives = 177/236 (75%), Gaps = 4/236 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14421




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20628




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36102




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1739_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1739
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3054
                           PA2946_tr
                           translation of PA2946
                           364
                           98.62
                           99.17
                           0
                           1895.0
     

     
     
94278
                           gb|AAG06334.1|AE004721_2
                           (AE004721) hypothetical protein PA2946 [Pseudomonas aeruginosa PAO1]
                           364
                           98.35
                           99.17
                           0
                           1892.0
     

     
     
94279
                           gb|AAO56639.1|
                           (AE016867) membrane protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           373
                           45.57
                           50.93
                           142
                           867.0
     

     
     
94280
                           gb|AAL41898.1|
                           (AE009054) conserved hypothetical protein [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           372
                           27.95
                           40.05
                           144
                           506.0
     

     
     
94281
                           gb|AAK86690.1|
                           (AE008020) AGR_C_1613p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           372
                           27.95
                           40.32
                           139
                           503.0
     

     






      

          
GC ORFID: 44741How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2946Glimmer Score: 

          
Start: 2690482Stop: 2691576

          
Length: 1095


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2946 translation of PA2946Homolog Bit Score 734.0

          
Other Homologs:  t_PA2946 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGACGCTCTCCGAGCCAGTCCGGCGCTGCCCCCGCAACGGTAAGCGCATCGCGCGCGAGCCCGGAGACCGG 
CCTGGAACCTTTCGTTTGATTCACCCGCGGTGGGCGGGCGCAAGCGTGAAGCGGGCCGTCCGGTCCCGTTCC 
TCGTGCGTACTCCTCTGCCACGCCCATGCCAATCCAGAGGGAACGCACCATGTCCAGCAGCACCCTGGCGCA 
CGCCAGCTCCACCACCTCCCTGTCGAAGCGACTGAGCCTGGCCATCGGCGCCGGCCTGCTCGGCGCGCTGCT 
GGTCTATTTCGCCGGTTTCTCGCACATCGACGCGGTACACAACGCCGCCCACGATACCCGGCACAGCTCCGG 
CTTCCCCTGCCACTGAGTCGCGAGAGAACCAGAATGATCAAGCGCATCGCCCAGACCGCCGGCTTCGCCGGC 
CTGCTCGCCGCCCTGCTGCTGACCCTGCTGCAGATTCTCTGGGTCACCCCGCTGATCCTCGAGGCGGAGACC 
TACGAGAAGAGCGAGCCGGTCGCGACCCAGCCCCACGAACACGCCCCCGGCGTCGCCGCCCATGTCCACGAC 
GAGGAGGCCTGGGAGCCGGAGGACGGCTGGCAGCGTACCCTCTCCACCACCGGCGGCAACCTGGTGGTGGCG 
GTCGGCTTCGCCCTGATGCTCGCCGGCCTCTTCACCCTGCGCGCGCCGGGCCAGACCTGGCAGGGCCTGCTC 
TGGGGCCTGGCCGGCTACGCGGTGTTCTGCCTTGCGCCGTCGCTGGGCCTGCCGCCGGAGCTGCCGGGTACC 
GCCGCGGCCGACCTGGTGCAACGCCAGTACTGGTGGATCGCCACCGCCGCCGCCACCGCGGTGGGCCTGGCC 
CTGCTGGTGTTCGGCGGCAACTGGCCGCTGAAGCTGGTCGGCGCCGTCCTGCTGGCGCTGCCGCACCTGTTC 
GGCGCGCCGCAGCCCGAGGTCCATGCCAGCCTGGCGCCGGAAGCCCTGGCCCAGCGTTTCGTGATCGCCTCG 
CTGGTCAGCAATGCGCTGTTCTGGGCCGCCCTCGGCCTGGCCGCTGCCTGGCTGTTCCGGCGCAACCGGGGC 
GGCGTCGACGCCTGA