ViewGene
Locus Name:
GeneID:
Location:

GeneID:1738
TrivialName: PA14_50760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50760
PAO1 Ortholog Locus:PA1052
Sequence Length:1146
Protein Length:381
Start: 4510215
Stop: 4509070
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04441.1|AE004537_6 (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 380/381 (99%), Positives = 380/381 (99%)
Sequence:
ATGAAAATCGTGATTGCTCCTGATTCGTTCAAGGAAAGTCTGTCAGCGCCCGACGTCGCCGAGGCTATCGCC
CGCGGTTGGCGGCGAGTCTTCCCGCAGGCCGAGGTGTTGCTGCGGCCACTGGCGGACGGCGGCGAAGGCACG
GTCGATGCGGTACTCGCCGCCACCGCCGGCGAACGTCGCGAATGCCGGGTGGAAGGCCCGCGCGGTGAGCCG
ACCCTGGCGCACTGGGGCTGGCTGGACGACGCCACCGCAGTGATCGAAATGGCTTCCGCCAGCGGCTTGCAC
CTGGTTCCGCGCGACCGCCGCGACGCCACGCGCAGCAGCAGCCGTGGCACTGGCGAGCTGATCCGTGCGGCG
CTGGACGCCGGGGCGCGGAAGATCATCCTCGGCCTCGGCGGCAGCGCTACCAACGATGCCGGCGCCGGCCTG
CTGGGCGCGCTCGGCGTGCGTTTCCTGGCTGCCGACGGCGAGGAACTGGCGCCCGGCGGCGCCGCGCTGGCG
GGCCTGCACAGTCTCGACCTGGGCGGGCTGGATCCGCGCCTGGTGGATGTCGCGGTGGAAGTCGCCGCGGAT
GTCGACAACCCGCTATGCGGGCCGCGCGGCGCGTCGGCGGTGTTCGGTCCGCAGAAGGGCGCCAGCGCCGAA
CAGGTGGCGCAACTGGATGCCGCCCTGGCGCACTTCGCCAAGGTGGTCGCGGCGACCCTGGGCGAGGACTTC
AGCCGGGTGCCGGGCGTCGGCGCCGCCGGCGGCCTGGGTTTCGCCGCGAGGGCATTCCTCCGTGCGCGTTTC
CGCCCAGGCATCGAACTGGTGGCGGAGCTGGCCGGGCTGGCCGATGCGCTGGTCGGTGCCGACCTGGTGCTG
ACCGGCGAGGGCCGCCTGGATGCGCAGAGCCTGCACGGCAAGACCCCGGTGGGCGTGGCGCGGATCGCGCGC
CAGGCCGGCGTTCCCGTGGTAGCCCTGGCCGGCAGCCTGGGCGACGGCTACCAGCGCCTGCACGACGCCGGC
ATCGATGCGGCGTTCAGCCTGGCGCCGGGACCGATCAGCCTGGAGCAGGCCTGTGCCGGAGCGGCGGCGGAA
CTGGAGGCGCGCGCCGAGCAGATCGCCCGGCTCTGGCGCCTGGCTCAGGCTTCGCGAGAAGGGTAG
Translation:
MKIVIAPDSFKESLSAPDVAEAIARGWRRVFPQAEVLLRPLADGGEGTVDAVLAATAGERRECRVEGPRGEP
TLAHWGWLDDATAVIEMASASGLHLVPRDRRDATRSSSRGTGELIRAALDAGARKIILGLGGSATNDAGAGL
LGALGVRFLAADGEELAPGGAALAGLHSLDLGGLDPRLVDVAVEVAADVDNPLCGPRGASAVFGPQKGASAE
QVAQLDAALAHFAKVVAATLGEDFSRVPGVGAAGGLGFAARAFLRARFRPGIELVAELAGLADALVGADLVL
TGEGRLDAQSLHGKTPVGVARIARQAGVPVVALAGSLGDGYQRLHDAGIDAAFSLAPGPISLEQACAGAAAE
LEARAEQIARLWRLAQASREG*
AnnotationID:1747GeneID:1738
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 14:02:01
Gene Name:
Confidence Code:3
GeneProduct:Putative glycerate kinase
Cell Localization:()
Synonyms:PA1052
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1929, pfam02595
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1929, Glycerate kinase [Carbohydrate transport and metabolism]. Score: 476, 2e-135
pfam02595, Gly_kinase, Glycerate kinase family. Score: 386, 2e-108






   
Genomic Context:






   
Comment:


















    ReferenceID:3479




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20626




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1738
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3053
                           PA1052_tr
                           translation of PA1052
                           381
                           99.73
                           99.73
                           0
                           1895.0
     

     
     
94197
                           gb|AAG04441.1|AE004537_6
                           (AE004537) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           381
                           99.73
                           99.73
                           0
                           1895.0
     

     
     
94198
                           emb|CAE34462.1|
                           (BX640449) glycerate kinase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           383
                           67.36
                           74.67
                           4
                           1235.0
     

     
     
94199
                           emb|CAE43597.1|
                           (BX640421) glycerate kinase [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           383
                           66.84
                           74.41
                           4
                           1225.0
     

     
     
94200
                           gb|AAN68786.1|AE016510_8
                           (AE016785) conserved hypothetical protein TIGR00045 [Pseudomonas putida KT2440]
                           383
                           63.44
                           75.71
                           6
                           1179.0
     

     






      

          
GC ORFID: 44740How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1052Glimmer Score: 

          
Start: 443693Stop: 444838

          
Length: 1146


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1052 translation of PA1052Homolog Bit Score 734.0

          
Other Homologs:  psyr_15may02_Scaffold11_revised_gene1791 (ORF: BLASTX 461.0), t_PA1052 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAATCGTGATTGCTCCTGATTCGTTCAAGGAAAGTCTGTCAGCGCCCGACGTCGCCGAGGCTATCGCC 
CGCGGTTGGCGGCGAGTCTTCCCGCAGGCCGAGGTGTTGCTGCGGCCACTGGCGGACGGCGGCGAAGGCACG 
GTCGATGCGGTACTCGCCGCCACCGCCGGCGAACGTCGCGAATGCCGGGTGGAAGGCCCGCGCGGTGAGCCG 
ACCCTGGCGCACTGGGGCTGGCTGGACGACGCCACCGCAGTGATCGAAATGGCTTCCGCCAGCGGCTTGCAC 
CTGGTTCCGCGCGACCGCCGCGACGCCACGCGCAGCAGCAGCCGTGGCACTGGCGAGCTGATCCGTGCGGCG 
CTGGACGCCGGGGCGCGGAAGATCATCCTCGGCCTCGGCGGCAGCGCTACCAACGATGCCGGCGCCGGCCTG 
CTGGGCGCGCTCGGCGTGCGTTTCCTGGCTGCCGACGGCGAGGAACTGGCGCCCGGCGGCGCCGCGCTGGCG 
GGCCTGCACAGTCTCGACCTGGGCGGGCTGGATCCGCGCCTGGTGGATGTCGCGGTGGAAGTCGCCGCGGAT 
GTCGACAACCCGCTATGCGGGCCGCGCGGCGCGTCGGCGGTGTTCGGTCCGCAGAAGGGCGCCAGCGCCGAA 
CAGGTGGCGCAACTGGATGCCGCCCTGGCGCACTTCGCCAAGGTGGTCGCGGCGACCCTGGGCGAGGACTTC 
AGCCGGGTGCCGGGCGTCGGCGCCGCCGGCGGCCTGGGTTTCGCCGCGAGGGCATTCCTCCGTGCGCGTTTC 
CGCCCAGGCATCGAACTGGTGGCGGAGCTGGCCGGGCTGGCCGATGCGCTGGTCGGTGCCGACCTGGTGCTG 
ACCGGCGAGGGCCGCCTGGATGCGCAGAGCCTGCACGGCAAGACCCCGGTGGGCGTGGCGCGGATCGCGCGC 
CAGGCCGGCGTTCCCGTGGTAGCCCTGGCCGGCAGCCTGGGCGACGGCTACCAGCGCCTGCACGACGCCGGC 
ATCGATGCGGCGTTCAGCCTGGCGCCGGGACCGATCAGCCTGGAGCAGGCCTGTGCCGGAGCGGCGGCGGAA 
CTGGAGGCGCGCGCCGAGCAGATCGCCCGGCTCTGGCGCCTGGCTCAGGCTTCGCGAGAAGGGTAG