ViewGene
Locus Name:
GeneID:
Location:

GeneID:1735
TrivialName: PA14_51550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51550
PAO1 Ortholog Locus:
Sequence Length:1101
Protein Length:366
Start: 4583761
Stop: 4584861
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82957.1| (AY273870) transposase [Pseudomonas aeruginosa]
Identities = 366/366 (100%), Positives = 366/366 (100%)
Sequence:
TTGTGGTTGACCTGCACGCCACAGCAGGATGTGCAGGCGGCGTTAGCTACAGCGTCGATACTCCTGGGCCAG
TTCCACCAGTTGGGCGTGCAGCTCGGTCGGTACACTAGCCTCGACCCGCTTGAGGAAGTCGAGAAGAACGCT
TCTGCACTGCCGTCTCCTGCTTGGAAAACGGATTCTACTAAGTTCAGCGTGGTACTGAAATCGGGGGGCAGG
TCAATCGACAAAGGTATCCCGACCGCAGGTTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGATCACTTG
CCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCAATTGCTCGCTCGACCCTGGCGCAGTGG
GTCGGACAAACCGGCGTGCGGCTTCAGCCACTGGTCGATGCACTGCGTGAAGCCGTGCTGAACCAGGGCGTG
ATCCACGCTGATGAAACACCGGTGCAAATGCTTGCGCCAGGCGAGAAGAAAACCCACCGGGCCTATGTCTGG
GCGTACAGCACGACGCCGTTTTCAGGGCTCAAAGCGGTGGTTTACGACTTCAGCCCAAGCCGTGCTGGCGAA
CATGCGCGCAACTTCCTGGGTGACTGGAACGGCAAGCTGGTCTGCGACGACTTCGCTGGCTACAAAGCCGGT
TTCGAACAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGGCGCAAGTTCTTTGATTTGCACGTGGCG
AACAAAAGTCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGTCAGGCGCGG
GACATGAGTGATGAAGAGCGCTGGCGAATACGACAAGAATTGGCGGTGCCGATCCTCAAAAAACTGCATGAC
TGGATGTTGGCTCAGCGAGACCTGGTGCCCAATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAA
CGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGATAACAATCAGGTCGAGAACCAA
ATACGGCCATGGGCGCTCGGGCGTTCGAACTGGCTGTTTGCCGGGTCGCTGCGCAGTGGTAAACGGGCGGCT
GCAATCATGAGCCTGATCTAG
Translation:
MWLTCTPQQDVQAALATASILLGQFHQLGVQLGRYTSLDPLEEVEKNASALPSPAWKTDSTKFSVVLKSGGR
SIDKGIPTAGLLAHVMVAKFADHLPLYRQEKIFGRAGLAIARSTLAQWVGQTGVRLQPLVDALREAVLNQGV
IHADETPVQMLAPGEKKTHRAYVWAYSTTPFSGLKAVVYDFSPSRAGEHARNFLGDWNGKLVCDDFAGYKAG
FEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSISGLYEVERQARDMSDEERWRIRQELAVPILKKLHD
WMLAQRDLVPNGSATAKALDYSLKRWVALTRYLDDGAVPIDNNQVENQIRPWALGRSNWLFAGSLRSGKRAA
AIMSLI*
AnnotationID:1744GeneID:1735
AnnotatorUID: danlee
Modification Date/Time: 2005-08-26 15:03:44
Gene Name:RS12
Confidence Code:3
GeneProduct:putative transposase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03050, Transposase_25, Transposase IS66 family.
       CD-Length = 199 residues, only  76.9% aligned
       Score =  162 bits (411), Expect = 7e-41






   
Genomic Context:






   
Comment:


















    ReferenceID:14419




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20620




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1735
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
94076
                           gb|AAP82957.1|
                           (AY273870) transposase [Pseudomonas aeruginosa]
                           366
                           99.72
                           99.99
                           0
                           1899.0
     

     
     
94077
                           gb|AAN69558.1|AE016589_7
                           (AE016788) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440]
                           517
                           59.57
                           61.31
                           157
                           1510.0
     

     
     
94083
                           gb|AAP84184.1|
                           (AY273869) transposase [Pseudomonas aeruginosa]
                           517
                           57.64
                           60.15
                           157
                           1463.0
     

     
     
94079
                           gb|AAN70015.1|AE016640_3
                           (AE016790) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440]
                           536
                           56.15
                           57.64
                           195
                           1490.0
     

     
     
94080
                           gb|AAN69102.1|AE016543_11
                           (AE016787) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440]
                           536
                           56.15
                           57.64
                           195
                           1490.0
     

     






      

          
GC ORFID: 44737How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RS12Glimmer Score: 

          
Start: 370146Stop: 369046

          
Length: 1101


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_RS12 366 Homolog: ORF13 / Putative transposase; recombination-related / P. syringae pv. Maculicola / plasmid pFKN (AAK49546) translation of RS12Homolog Bit Score 736.0

          
Other Homologs:  t_RS12 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGTGGTTGACCTGCACGCCACAGCAGGATGTGCAGGCGGCGTTAGCTACAGCGTCGATACTCCTGGGCCAG 
TTCCACCAGTTGGGCGTGCAGCTCGGTCGGTACACTAGCCTCGACCCGCTTGAGGAAGTCGAGAAGAACGCT 
TCTGCACTGCCGTCTCCTGCTTGGAAAACGGATTCTACTAAGTTCAGCGTGGTACTGAAATCGGGGGGCAGG 
TCAATCGACAAAGGTATCCCGACCGCAGGTTTGTTGGCCCACGTGATGGTGGCCAAGTTTGCCGATCACTTG 
CCGCTGTACCGGCAGGAGAAAATCTTTGGCCGCGCCGGGCTGGCAATTGCTCGCTCGACCCTGGCGCAGTGG 
GTCGGACAAACCGGCGTGCGGCTTCAGCCACTGGTCGATGCACTGCGTGAAGCCGTGCTGAACCAGGGCGTG 
ATCCACGCTGATGAAACACCGGTGCAAATGCTTGCGCCAGGCGAGAAGAAAACCCACCGGGCCTATGTCTGG 
GCGTACAGCACGACGCCGTTTTCAGGGCTCAAAGCGGTGGTTTACGACTTCAGCCCAAGCCGTGCTGGCGAA 
CATGCGCGCAACTTCCTGGGTGACTGGAACGGCAAGCTGGTCTGCGACGACTTCGCTGGCTACAAAGCCGGT 
TTCGAACAAGGCATCACTGAAATCGGCTGCATGGCCCACGCCCGGCGCAAGTTCTTTGATTTGCACGTGGCG 
AACAAAAGTCAGCTGGCTGAACAGGCCCTGCACTCGATCAGCGGCTTGTACGAGGTCGAACGTCAGGCGCGG 
GACATGAGTGATGAAGAGCGCTGGCGAATACGACAAGAATTGGCGGTGCCGATCCTCAAAAAACTGCATGAC 
TGGATGTTGGCTCAGCGAGACCTGGTGCCCAATGGATCAGCCACGGCCAAAGCCCTCGATTACAGCCTGAAA 
CGCTGGGTAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCCATCGATAACAATCAGGTCGAGAACCAA 
ATACGGCCATGGGCGCTCGGGCGTTCGAACTGGCTGTTTGCCGGGTCGCTGCGCAGTGGTAAACGGGCGGCT 
GCAATCATGAGCCTGATCTAG