ViewGene
Locus Name:
GeneID:
Location:

GeneID:1734
TrivialName: PA14_71070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71070
PAO1 Ortholog Locus:PA5380
Sequence Length:1104
Protein Length:367
Start: 6331592
Stop: 6332695
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08765.1|AE004950_8 (AE004950) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 367/367 (100%), Positives = 367/367 (100%)
Sequence:
ATGACCACGTACGCGCCCGGAGTTCCGCCACAGAACCGAAATCCGCAGTCCATCGGCTTCCTGCTGCTGGAT
AACTTCACCCTGATCTCCCTGGCCTCGGCGGTGGAACCGTTGCGCATGGCCAACCAGCTCTCGGGACGCGAA
CTCTACCGCTGGCATACGCTGAGCCTGGACGGCCGCCAGGTCTGGGCCAGCGACGGCCTGCAGATCACCCCC
GACGCCGGTACCGACAACGCCCCGGCGGTGGATTGCGTGATCGTCTGCGGCGGCGTCGGCATCCAGCGCAGC
GTCACCCGCGAGCACGTCACTTTCCTCCAGGCCCAGGCCCGCCAGGGTCGGCGCCTCGGCGCGGTGTGCACC
GGCAGTTGGGCGCTGGCCCGCGCCGGCCTGCTCGACGGCTACGATTGCAGCGTGCACTGGGAATGCCTGGCG
GCGATGCAGGAAGCCTTCCCCCGGGTGGCCATGAGCACCCGCCTGTTCTCCATCGACCGCAACCGCTTCACC
TCTTCCGGCGGCACCGCGCCGATGGACATGATGCTGCACCTGATCGGCCGCGAGCATGGCCGCGAGCTGTCG
GCGGCGATCTCCGAGATGTTCATCTACGAGCGCATCCGCAACGAGCAGGACCACCAGCGCGTGCCGCTCAAG
CACATGCTCGGCACCAACCAGCCGAAGTTGCAGGAGATCGTCGCGCTGATGGAGGCGAACCTGGAGGAACCG
ATCGACCTCGACGAACTGGCGGTCTACGTCAACGTCTCGCGTCGCCAGCTCGAGCGGCTGTTCCAGAAGTAC
CTGCACTGCTCGCCGTCGCGCTACTACCTGAAGCTGCGCCTGATCCGCGCCCGCCAGTTGCTCAAGCAGACG
TCCATGTCGATCATCGAGGTGGCCTCGGTCTGCGGCTTCGTCTCCACCCCGCACTTCTCCAAGTGCTACCGC
GAGTACTTCGGCATCCCGCCGCGTGACGAGCGCCAGGGCCAGCCGCTGGGCCAGCCGGTGGTGCTGATGCCG
ATCCCGCAGGACCTGGCGCTGATGCCCAACTCCTCGGCGCTGTCGGCCCTAAGCCAGGCGCAGGGCGAGTCG
ACCTTCGCCAGCGTGCGGATCTGA
Translation:
MTTYAPGVPPQNRNPQSIGFLLLDNFTLISLASAVEPLRMANQLSGRELYRWHTLSLDGRQVWASDGLQITP
DAGTDNAPAVDCVIVCGGVGIQRSVTREHVTFLQAQARQGRRLGAVCTGSWALARAGLLDGYDCSVHWECLA
AMQEAFPRVAMSTRLFSIDRNRFTSSGGTAPMDMMLHLIGREHGRELSAAISEMFIYERIRNEQDHQRVPLK
HMLGTNQPKLQEIVALMEANLEEPIDLDELAVYVNVSRRQLERLFQKYLHCSPSRYYLKLRLIRARQLLKQT
SMSIIEVASVCGFVSTPHFSKCYREYFGIPPRDERQGQPLGQPVVLMPIPQDLALMPNSSALSALSQAQGES
TFASVRI*
AnnotationID:1743GeneID:1734
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:41
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA5380
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65929.1|AE016221_1 (AE016775) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 368

 Score =  640 bits (1650), Expect = 0.0
 Identities = 319/368 (86%), Positives = 338/368 (91%), Gaps = 1/368 (0%)

>gb|AAO54009.1| (AE016857) transcriptional regulator, AraC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 367

 Score =  631 bits (1628), Expect = e-180
 Identities = 316/367 (86%), Positives = 335/367 (91%)

>emb|CAD17205.1| (AL646076) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION
           REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 343

 Score =  299 bits (765), Expect = 2e-80
 Identities = 155/319 (48%), Positives = 214/319 (67%), Gaps = 5/319 (1%)








 
Structural Features:
COG4977, Transcriptional regulator containing an amidase domain and an 
AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  95.4% aligned
Score =  386 bits (994), Expect = 1e-108
Identities = 158/313 (50%), Positives = 210/313 (67%), Gaps = 1/313 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3471




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20618




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34720




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1734_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1734
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3045
                           PA5380_tr
                           translation of PA5380
                           367
                           99.99
                           99.99
                           0
                           1899.0
     

     
     
94053
                           gb|AAG08765.1|AE004950_8
                           (AE004950) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           367
                           99.99
                           99.99
                           0
                           1899.0
     

     
     
94054
                           gb|AAN65929.1|AE016221_1
                           (AE016775) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           368
                           86.68
                           91.84
                           1
                           1652.0
     

     
     
94055
                           gb|AAO54009.1|
                           (AE016857) transcriptional regulator, AraC family [Pseudomonas syringae pv. tomato str. DC3000]
                           367
                           86.10
                           91.28
                           0
                           1628.0
     

     
     
94057
                           emb|CAD17205.1|
                           (AL646076) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum]
                           370
                           42.97
                           61.08
                           30
                           765.0
     

     






      

          
GC ORFID: 44736How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5380Glimmer Score: 

          
Start: 5595281Stop: 5596384

          
Length: 1104


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5380 translation of PA5380Homolog Bit Score 736.0

          
Other Homologs:  t_PA5389 (ORF: BLASTX 262.0), t_PA5380 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACGTACGCGCCCGGAGTTCCGCCACAGAACCGAAATCCGCAGTCCATCGGCTTCCTGCTGCTGGAT 
AACTTCACCCTGATCTCCCTGGCCTCGGCGGTGGAACCGTTGCGCATGGCCAACCAGCTCTCGGGACGCGAA 
CTCTACCGCTGGCATACGCTGAGCCTGGACGGCCGCCAGGTCTGGGCCAGCGACGGCCTGCAGATCACCCCC 
GACGCCGGTACCGACAACGCCCCGGCGGTGGATTGCGTGATCGTCTGCGGCGGCGTCGGCATCCAGCGCAGC 
GTCACCCGCGAGCACGTCACTTTCCTCCAGGCCCAGGCCCGCCAGGGTCGGCGCCTCGGCGCGGTGTGCACC 
GGCAGTTGGGCGCTGGCCCGCGCCGGCCTGCTCGACGGCTACGATTGCAGCGTGCACTGGGAATGCCTGGCG 
GCGATGCAGGAAGCCTTCCCCCGGGTGGCCATGAGCACCCGCCTGTTCTCCATCGACCGCAACCGCTTCACC 
TCTTCCGGCGGCACCGCGCCGATGGACATGATGCTGCACCTGATCGGCCGCGAGCATGGCCGCGAGCTGTCG 
GCGGCGATCTCCGAGATGTTCATCTACGAGCGCATCCGCAACGAGCAGGACCACCAGCGCGTGCCGCTCAAG 
CACATGCTCGGCACCAACCAGCCGAAGTTGCAGGAGATCGTCGCGCTGATGGAGGCGAACCTGGAGGAACCG 
ATCGACCTCGACGAACTGGCGGTCTACGTCAACGTCTCGCGTCGCCAGCTCGAGCGGCTGTTCCAGAAGTAC 
CTGCACTGCTCGCCGTCGCGCTACTACCTGAAGCTGCGCCTGATCCGCGCCCGCCAGTTGCTCAAGCAGACG 
TCCATGTCGATCATCGAGGTGGCCTCGGTCTGCGGCTTCGTCTCCACCCCGCACTTCTCCAAGTGCTACCGC 
GAGTACTTCGGCATCCCGCCGCGTGACGAGCGCCAGGGCCAGCCGCTGGGCCAGCCGGTGGTGCTGATGCCG 
ATCCCGCAGGACCTGGCGCTGATGCCCAACTCCTCGGCGCTGTCGGCCCTAAGCCAGGCGCAGGGCGAGTCG 
ACCTTCGCCAGCGTGCGGATCTGA