ViewGene
Locus Name:
GeneID:
Location:

GeneID:1733
TrivialName: PA14_64620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64620
PAO1 Ortholog Locus:PA4889
Sequence Length:1101
Protein Length:366
Start: 5757603
Stop: 5756503
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08274.1|AE004902_2 (AE004902) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 360/366 (98%), Positives = 361/366 (98%)
Sequence:
ATGGCCTTGCTTCCCCTCGCTCTCCTGACCCCTTTGCTCGCACCCCTGCGCCGTCTCGCCGCCCGTGGCTGG
CTGcccCaggcCGATGTCGacggcCTGCTGCGCCACGCCCATCCGCTGGCGTCGCTGAACCgcCACTATGCG
CGGGTCGAGGCACGCTACTGGGTGGCCGACGATATGCTCGCCCTGGCCCTGCGTACCGCCCCCGGCTGGCCG
CCGGCGCGGCCGGGCCAGCACATCCAACTGCTGGCGGAGCGCGACGGGGTGCGGGTCGGGCGCAGCTACAGC
CTGACCCGGGTGGTCGGCGAGCGCCTGGAAATCGCCGTCAAGCGTCACCCGGACGGGCTGCTCTCGCCCTGG
TTGTGCGAACACCTGGCGGTCGGCCAGCGTGTCGAGTTGCAGCCCGCGCAAGGCGATCTGCGCTGGCCGATG
CAGGCCGAGGCGGTCTGCCTGCTGGCCGCCGGCAGCGGCCTGACGCCCTTGCTCGGCCTGCTCCGCGAGGCG
CTGGAGAACGGCTATCGCGGTCCCGTGCTGTGGCTGCACTACGCCCGTCATCCCGGCCAGCGCGCCTGGTTC
GGCGAGCTGGAGGCGCTGGCGGCGCGCCACCCGAACCTGGAGTTGCGCTGGAGCCTGACCCGCGGGGCGCGG
GCCGATGGCTGCCTGGAGGGGCATTTCCAGCCGCGCCACCTGGACGGCTGGGCAGCCGACCTGGCGCGCAGC
CAAGCCTTGGCCTGCGGGCCGGCGGCTTTCGTCGAGGCGGTGGGCGAGCAACTGGGGGCACGCTTCGCCGGC
TTGCAGACGGAATCCTTCAGCGTCCCGCGCTGGCGCAGTGGGGAGGCGCCGCGCGAAGTGCGCCTGCGCTTC
GCCCGGTCGCAGCGGGAAGTCTCCGGCGACAGCGCCGCCAGCCTGCTGGAACAGGCCGAGGCCCACGGCCTG
CGCCCGGCCCACGGTTGCCGCCAGGGCATCTGTGCCAGTTGCACCTGCGTCCTGCTCAGCGGCTGCGTGCGC
GACCTGCGCAGCGGCGCGCTGTGCAGCGAGCCCGGCCAGTCTATCCGCCTCTGCGTCAGCGCCGCCCACGGC
GACCTGGCGCTGGACCTGTGA
Translation:
MALLPLALLTPLLAPLRRLAARGWLPQADVDGLLRHAHPLASLNRHYARVEARYWVADDMLALALRTAPGWP
PARPGQHIQLLAERDGVRVGRSYSLTRVVGERLEIAVKRHPDGLLSPWLCEHLAVGQRVELQPAQGDLRWPM
QAEAVCLLAAGSGLTPLLGLLREALENGYRGPVLWLHYARHPGQRAWFGELEALAARHPNLELRWSLTRGAR
ADGCLEGHFQPRHLDGWAADLARSQALACGPAAFVEAVGEQLGARFAGLQTESFSVPRWRSGEAPREVRLRF
ARSQREVSGDSAASLLEQAEAHGLRPAHGCRQGICASCTCVLLSGCVRDLRSGALCSEPGQSIRLCVSAAHG
DLALDL*
AnnotationID:1742GeneID:1733
AnnotatorUID: diggins
Modification Date/Time: 2004-11-04 09:09:23
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1018
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1018, Hmp, Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 
[Energy production and conversion]






   
Genomic Context:






   
Comment:


















    ReferenceID:3469




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20616




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35167




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1733_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1733
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3044
                           PA4889_tr
                           translation of PA4889
                           366
                           98.36
                           98.63
                           0
                           1901.0
     

     
     
94052
                           gb|AAG08274.1|AE004902_2
                           (AE004902) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           366
                           98.36
                           98.63
                           0
                           1901.0
     

     






      

          
GC ORFID: 44735How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4889Glimmer Score: 

          
Start: 5021284Stop: 5020184

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4889 translation of PA4889Homolog Bit Score 736.0

          
Other Homologs:  t_PA4889 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTTGCTTCCCCTCGCTCTCCTGACCCCTTTGCTCGCACCCCTGCGCCGTCTCGCCGCCCGTGGCTGG 
CTGcccCaggcCGATGTCGacggcCTGCTGCGCCACGCCCATCCGCTGGCGTCGCTGAACCgcCACTATGCG 
CGGGTCGAGGCACGCTACTGGGTGGCCGACGATATGCTCGCCCTGGCCCTGCGTACCGCCCCCGGCTGGCCG 
CCGGCGCGGCCGGGCCAGCACATCCAACTGCTGGCGGAGCGCGACGGGGTGCGGGTCGGGCGCAGCTACAGC 
CTGACCCGGGTGGTCGGCGAGCGCCTGGAAATCGCCGTCAAGCGTCACCCGGACGGGCTGCTCTCGCCCTGG 
TTGTGCGAACACCTGGCGGTCGGCCAGCGTGTCGAGTTGCAGCCCGCGCAAGGCGATCTGCGCTGGCCGATG 
CAGGCCGAGGCGGTCTGCCTGCTGGCCGCCGGCAGCGGCCTGACGCCCTTGCTCGGCCTGCTCCGCGAGGCG 
CTGGAGAACGGCTATCGCGGTCCCGTGCTGTGGCTGCACTACGCCCGTCATCCCGGCCAGCGCGCCTGGTTC 
GGCGAGCTGGAGGCGCTGGCGGCGCGCCACCCGAACCTGGAGTTGCGCTGGAGCCTGACCCGCGGGGCGCGG 
GCCGATGGCTGCCTGGAGGGGCATTTCCAGCCGCGCCACCTGGACGGCTGGGCAGCCGACCTGGCGCGCAGC 
CAAGCCTTGGCCTGCGGGCCGGCGGCTTTCGTCGAGGCGGTGGGCGAGCAACTGGGGGCACGCTTCGCCGGC 
TTGCAGACGGAATCCTTCAGCGTCCCGCGCTGGCGCAGTGGGGAGGCGCCGCGCGAAGTGCGCCTGCGCTTC 
GCCCGGTCGCAGCGGGAAGTCTCCGGCGACAGCGCCGCCAGCCTGCTGGAACAGGCCGAGGCCCACGGCCTG 
CGCCCGGCCCACGGTTGCCGCCAGGGCATCTGTGCCAGTTGCACCTGCGTCCTGCTCAGCGGCTGCGTGCGC 
GACCTGCGCAGCGGCGCGCTGTGCAGCGAGCCCGGCCAGTCTATCCGCCTCTGCGTCAGCGCCGCCCACGGC 
GACCTGGCGCTGGACCTGTGA