ViewGene
Locus Name:
GeneID:
Location:

GeneID:1732
TrivialName: PA14_45210
AnnotatorUID: danlee
Modification Date/Time:2006-06-03 00:12:14
LocusName:PA14_45210
PAO1 Ortholog Locus:PA1486
Sequence Length:1101
Protein Length:366
Start: 4032688
Stop: 4031588
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04875.1|AE004577_10 (AE004577) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 364/366 (99%), Positives = 364/366 (99%)
Sequence:
ATGCGCGCTCGACAACTTGGCATCACCCTCGGCCTGGGCACTCCCGGCCCGTTCAACGCGATCACCGACGTT
CCCGGCGTGCGCGTCGGCCACAGCACCCTGAACCAGCGGATCGACGGCAGGCAGGTTCGCACCGGCGTCACC
CTGGTCCAGCCGCGCGCCGGTGCGGCGCGCCTGCAACCCTGCTTCGCCGGCTGCCATGTGCTCAACGGCAAC
GGCGACGCCACGGGCCTGGAGTGGATCCGCGAAGCCGGCCTGCTGACCACCCCGATCGCCATCACCAATACC
CACAGCGTCGGCGCGGTGCGCGACGCGCTGATCGCCGAGGAGCGCGCCGAACTCGGCGACAGCGGGCTGTAC
TGGTGCATGCCGGTGGTGATGGAGACCTTCGACGGCCTGCTCAACGATATCTGGGGCCAGCACGTCGGCGCC
CGCCAGGTCGGCGAGGCGCTGGCCTGCGCCGAGTCCGGACCGGTCCGCGAAGGTTCGGTGGGCGGCGGCACC
GGGATGATCTGCCACGAGTTCAAGGGTGGCATCGGTAGCGCATCGCGGCGGCTGCCGGCGGAGCAGGGCGGC
TGGACGGTGGGCGCGCTGGTCCAGGCCAACCACGGCCAGCGTCGCGAGCTGCGGGTCGATGGCTATCCGGTC
GGCCGCCGGCTGGGCGACATCCCCTCGCCGTTCAGCGAGGAAGGCACCCCGGGCATGGGCTCCATCGTGGTG
ATCCTGGCCACCGACGCGCCGCTGCTGCCGCACCAGTGCCAGCGCCTGGCGCAGCGCGCCTCGATCGGCATC
GCTCGCACCGGCGGTGGCACCGAGGACTCCAGCGGCGACGTGTTCCTCGCCTTCGCCACCGGCAACCAGGAC
CTGCCGCCAGCCGACTATGCGCGCAAGGACCTGCCGCAGAGCACGCCGCTGCGGATGCTCAACAACGACCAC
ATCTCGCCGTTGTTCGCCGCGGCGGCGGAGGCGGTGGAAGAAGCCATCGTCAACGTGCTGCTGGCCGGCGAG
GACATGCGCACCGAGGACGGCCGGCTGGTGCCCGCGCTGAAGGGGGAGACGCTCCTGACGGCGCTGCGCGAG
ACCGGCTGGCCGGGACGCTGA
Translation:
MRARQLGITLGLGTPGPFNAITDVPGVRVGHSTLNQRIDGRQVRTGVTLVQPRAGAARLQPCFAGCHVLNGN
GDATGLEWIREAGLLTTPIAITNTHSVGAVRDALIAEERAELGDSGLYWCMPVVMETFDGLLNDIWGQHVGA
RQVGEALACAESGPVREGSVGGGTGMICHEFKGGIGSASRRLPAEQGGWTVGALVQANHGQRRELRVDGYPV
GRRLGDIPSPFSEEGTPGMGSIVVILATDAPLLPHQCQRLAQRASIGIARTGGGTEDSSGDVFLAFATGNQD
LPPADYARKDLPQSTPLRMLNNDHISPLFAAAAEAVEEAIVNVLLAGEDMRTEDGRLVPALKGETLLTALRE
TGWPGR*
AnnotationID:1741GeneID:1732
AnnotatorUID: danlee
Modification Date/Time: 2005-07-28 16:04:15
Gene Name:
Confidence Code:4
GeneProduct:putative D-aminopeptidase
Cell Localization:()
Synonyms:PA1486
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3191,pfam03576,cd00123
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69438.1|AE016579_9 (AE016788) D-aminopeptidase putative [Pseudomonas putida KT2440]
          Length = 377

 Score =  471 bits (1213), Expect = e-132
 Identities = 246/368 (66%), Positives = 278/368 (75%), Gaps = 6/368 (1%)








 
Structural Features:
COG3191, DmpA, L-aminopeptidase/D-esterase 
[Amino acid transport and metabolism / 
Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 348 residues,  97.7% aligned
Score =  318 bits (815), Expect = 9e-88
Identities = 150/354 (42%), Positives = 176/354 (49%), Gaps = 20/354 (5%)

pfam03576, Peptidase_S58, Peptidase family T4.
CD-Length = 334 residues, 100.0% aligned
Score =  254 bits (651), Expect = 1e-68
Identities = 132/346 (38%), Positives = 174/346 (50%), Gaps = 19/346 (5%)

cd00123, Aminopeptidase, L-Aminopeptidase domain
CD-Length = 128 residues, 100.0% aligned
Score =  115 bits (290), Expect = 6e-27
Identities = 54/128 (42%), Positives = 60/128 (46%), Gaps = 1/128 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3467




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20614




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37345




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1732_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1732
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3043
                           PA1486_tr
                           translation of PA1486
                           366
                           99.45
                           99.45
                           0
                           1901.0
     

     
     
94032
                           gb|AAG04875.1|AE004577_10
                           (AE004577) hypothetical protein PA1486 [Pseudomonas aeruginosa PAO1]
                           366
                           99.45
                           99.45
                           0
                           1901.0
     

     
     
94033
                           gb|AAN69438.1|AE016579_9
                           (AE016788) D-aminopeptidase putative [Pseudomonas putida KT2440]
                           379
                           64.90
                           73.35
                           15
                           1220.0
     

     
     
94036
                           gb|AAK90616.1|
                           (AE007894) AGR_pAT_343p [Agrobacterium tumefaciens str. C58 (Cereon)]
                           400
                           46.00
                           57.00
                           50
                           757.0
     

     
     
94035
                           gb|AAL45931.1|
                           (AE008947) aminopeptidase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           400
                           46.00
                           57.00
                           50
                           757.0
     

     






      

          
GC ORFID: 44734How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1486Glimmer Score: 

          
Start: 921221Stop: 922321

          
Length: 1101


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1486 translation of PA1486Homolog Bit Score 736.0

          
Other Homologs:  t_PA1486 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGCTCGACAACTTGGCATCACCCTCGGCCTGGGCACTCCCGGCCCGTTCAACGCGATCACCGACGTT 
CCCGGCGTGCGCGTCGGCCACAGCACCCTGAACCAGCGGATCGACGGCAGGCAGGTTCGCACCGGCGTCACC 
CTGGTCCAGCCGCGCGCCGGTGCGGCGCGCCTGCAACCCTGCTTCGCCGGCTGCCATGTGCTCAACGGCAAC 
GGCGACGCCACGGGCCTGGAGTGGATCCGCGAAGCCGGCCTGCTGACCACCCCGATCGCCATCACCAATACC 
CACAGCGTCGGCGCGGTGCGCGACGCGCTGATCGCCGAGGAGCGCGCCGAACTCGGCGACAGCGGGCTGTAC 
TGGTGCATGCCGGTGGTGATGGAGACCTTCGACGGCCTGCTCAACGATATCTGGGGCCAGCACGTCGGCGCC 
CGCCAGGTCGGCGAGGCGCTGGCCTGCGCCGAGTCCGGACCGGTCCGCGAAGGTTCGGTGGGCGGCGGCACC 
GGGATGATCTGCCACGAGTTCAAGGGTGGCATCGGTAGCGCATCGCGGCGGCTGCCGGCGGAGCAGGGCGGC 
TGGACGGTGGGCGCGCTGGTCCAGGCCAACCACGGCCAGCGTCGCGAGCTGCGGGTCGATGGCTATCCGGTC 
GGCCGCCGGCTGGGCGACATCCCCTCGCCGTTCAGCGAGGAAGGCACCCCGGGCATGGGCTCCATCGTGGTG 
ATCCTGGCCACCGACGCGCCGCTGCTGCCGCACCAGTGCCAGCGCCTGGCGCAGCGCGCCTCGATCGGCATC 
GCTCGCACCGGCGGTGGCACCGAGGACTCCAGCGGCGACGTGTTCCTCGCCTTCGCCACCGGCAACCAGGAC 
CTGCCGCCAGCCGACTATGCGCGCAAGGACCTGCCGCAGAGCACGCCGCTGCGGATGCTCAACAACGACCAC 
ATCTCGCCGTTGTTCGCCGCGGCGGCGGAGGCGGTGGAAGAAGCCATCGTCAACGTGCTGCTGGCCGGCGAG 
GACATGCGCACCGAGGACGGCCGGCTGGTGCCCGCGCTGAAGGGGGAGACGCTCCTGACGGCGCTGCGCGAG 
ACCGGCTGGCCGGGACGCTGA