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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG03690.1|AE004468_2 (AE004468) polyamine transport protein [Pseudomonas aeruginosa PAO1]
Identities = 365/365 (100%), Positives = 365/365 (100%)
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Sequence:
ATGCAACATTCCATTGGCAAGACACTGCTGGTAGCCGCTCTGGCTACGGCGATCGCGGGCCCCGTGCAGGCG
GAGAAGAAGAGCCTGCACATCTATAACTGGACCGATTACATCGCTCCCACCACCCTCAAGGACTTCACCAAG
GAGAGCGGGATCGACGTCAGCTACGACGTCTTCGACTCCAACGAGACCCTCGAGGGCAAGCTGGTCTCCGGC
CACTCCGGCTATGACATCGTGGTGCCGTCGAACAACTTCCTCGGCAAGCAGATCCAGGCCGGTGCCTTCCAG
AAGCTGGACAAGAGCAAGCTGCCGAACTGGAAGAACCTCGATCCGGCGCTGCTCAAGCAACTGGAGGTCAGC
GACCCGGGCAACCAGTACGCGGTTCCCTACCTGTGGGGCACCAACGGCATCGGTTACAACGTGGCCAAGGTC
AAGGAAGTCCTCGGCGACCAGCCGATCGACTCCTGGGCCATCCTCTTCGAGCCGGAGAACATGAAGAAGCTC
GCCAAGTGCGGCGTAGCCTTCATGGACAGCGGCGACGAGATGCTGCCCGCCGCCCTCAACTACCTGGGGCTG
GACCCCAACACCCACGACCCGAAGGACTACAAGAAGGCCGAGGAAGTCCTGACCAAGGTTCGCCCCTACGTC
AGCTACTTCCACTCCTCCAAGTACATCTCCGACCTGGCCAACGGCAACATCTGCGTCGCCTTCGGCTATTCC
GGGGACGTCTTCCAGGCCGCTGCCCGCGCCGAAGAGGCCGGCAAGGGCATCGACATCCAGTACGTGATTCCC
AAGGAAGGCGCCAACCTGTGGTTCGACCTGATGGCGATTCCCGCCGATGCCAAGGCCGCCGATAACGCCTAT
GCGTTCATCGACTACCTGCTGCGTCCGGAGGTGATCGCCAAGGTCAGCGACTACGTCGGCTACGCCAACGCG
ATACCGGGGGCCCGCCCGCTGATGGACAAGAGCGTCAGCGACAGCGAGGAGGTGTATCCGCCGCAGGCCGTG
CTCGACAAGCTCTACGTTTCCGCCGTGTTGCCGGCCAAGGTGCTGCGCCTGCAGACCCGTACCTGGACCCGG
ATCAAGACCGGCAAATAA |
Translation:
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSG
HSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKV
KEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYV
SYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAY
AFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTR
IKTGK* |
AnnotationID:1740 | GeneID:1731 |
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Modification Date/Time: |
2005-03-24 07:07:58 |
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GeneProduct: | polyamine transport protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | polyamine ABC transporter, periplasmic polyamine-binding protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | amino acid biosynthesis and metabolims |
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Homology: | >gb|AAN70745.1|AE016718_4 (AE016793) putrescine ABC transporter, periplasmic
putrescine-binding protein [Pseudomonas putida KT2440]
Length = 364
Score = 514 bits (1324), Expect = e-145
Identities = 249/365 (68%), Positives = 299/365 (81%), Gaps = 1/365 (0%)
>gb|AAO58732.1| (AE016875) putrescine ABC transporter, periplasmic
putrescine-binding protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 374
Score = 484 bits (1245), Expect = e-136
Identities = 238/361 (65%), Positives = 284/361 (78%), Gaps = 1/361 (0%)
>gb|AAN54338.1|AE015571_1 (AE015571) polyamine ABC transporter, periplasmic polyamine-binding
protein [Shewanella oneidensis MR-1]
Length = 367
Score = 449 bits (1156), Expect = e-126
Identities = 216/360 (60%), Positives = 283/360 (78%), Gaps = 3/360 (0%)
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Structural Features: | COG0687, PotD, Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]
CD-Length = 363 residues, 97.8% aligned
Score = 351 bits (901), Expect = 8e-98
Identities = 175/363 (48%), Positives = 219/363 (60%), Gaps = 9/363 (2%) |
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GC ORFID: 44733 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA0301 | Glimmer Score: |
Start: 6155426 | Stop: 6156523 |
Length: 1098 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TAA | Truncated Stop: |
Homolog: t_PA0301 translation of PA0301 | Homolog Bit Score 737.0 |
Other Homologs: psyr_15may02_Scaffold6_revised_gene6512 (ORF: BLASTX 498.0), t_PA0300 (ORF: BLASTX 455.0), t_PA1410 (ORF: BLASTX 443.0), t_PA2711 (ORF: BLASTX 438.0), psyr_15may02_Scaffold6_revised_gene6511 (ORF: BLASTX 426.0), psyr_15may02_Scaffold7_revised_gene7441 (ORF: BLASTX 379.0), t_PA2592 (ORF: BLASTX 364.0), t_PA0301 (ORF: GLIMMER) |
GC ORF Sequence |
ATGCAACATTCCATTGGCAAGACACTGCTGGTAGCCGCTCTGGCTACGGCGATCGCGGGCCCCGTGCAGGCG GAGAAGAAGAGCCTGCACATCTATAACTGGACCGATTACATCGCTCCCACCACCCTCAAGGACTTCACCAAG GAGAGCGGGATCGACGTCAGCTACGACGTCTTCGACTCCAACGAGACCCTCGAGGGCAAGCTGGTCTCCGGC CACTCCGGCTATGACATCGTGGTGCCGTCGAACAACTTCCTCGGCAAGCAGATCCAGGCCGGTGCCTTCCAG AAGCTGGACAAGAGCAAGCTGCCGAACTGGAAGAACCTCGATCCGGCGCTGCTCAAGCAACTGGAGGTCAGC GACCCGGGCAACCAGTACGCGGTTCCCTACCTGTGGGGCACCAACGGCATCGGTTACAACGTGGCCAAGGTC AAGGAAGTCCTCGGCGACCAGCCGATCGACTCCTGGGCCATCCTCTTCGAGCCGGAGAACATGAAGAAGCTC GCCAAGTGCGGCGTAGCCTTCATGGACAGCGGCGACGAGATGCTGCCCGCCGCCCTCAACTACCTGGGGCTG GACCCCAACACCCACGACCCGAAGGACTACAAGAAGGCCGAGGAAGTCCTGACCAAGGTTCGCCCCTACGTC AGCTACTTCCACTCCTCCAAGTACATCTCCGACCTGGCCAACGGCAACATCTGCGTCGCCTTCGGCTATTCC GGGGACGTCTTCCAGGCCGCTGCCCGCGCCGAAGAGGCCGGCAAGGGCATCGACATCCAGTACGTGATTCCC AAGGAAGGCGCCAACCTGTGGTTCGACCTGATGGCGATTCCCGCCGATGCCAAGGCCGCCGATAACGCCTAT GCGTTCATCGACTACCTGCTGCGTCCGGAGGTGATCGCCAAGGTCAGCGACTACGTCGGCTACGCCAACGCG ATACCGGGGGCCCGCCCGCTGATGGACAAGAGCGTCAGCGACAGCGAGGAGGTGTATCCGCCGCAGGCCGTG CTCGACAAGCTCTACGTTTCCGCCGTGTTGCCGGCCAAGGTGCTGCGCCTGCAGACCCGTACCTGGACCCGG ATCAAGACCGGCAAATAA |
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