ViewGene
Locus Name:
GeneID:
Location:

GeneID:1727
TrivialName: PA14_16260
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16260
PAO1 Ortholog Locus:PA3723
Sequence Length:1107
Protein Length:368
Start: 1389187
Stop: 1390293
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07110.1|AE004791_7 (AE004791) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 364/368 (98%), Positives = 365/368 (99%)
Sequence:
ATGAGTCTGCTGTTCGAGCCTCTTAGCCTGCGTCAAATCACCTTGCCCAACCGCATCGCCGTATCGCCCATG
TGCCAGTATTCGGCGCAGGAGGGCCTGGCCAACGACTGGCATCTCGTGCACCTGGGCAGTCGCGCGGTGGGC
GGCGCCGGCCTGGTGATCGTCGAAGCCACCGCGGTGTTGCCCGAGGGGCGCATCACCGCCGACGACCTCGGC
ATCTGGAGCGACGCGCATGTCGAGCCGTTGCATCGCATCACCCGTTTCATCGAGTCCCAGGGCGCGGTCGCC
GGGGTCCAGCTGGCCCACGCCGGGCGCAAGGCGAGTACCTGGCGGCCGTGGCTGGGCAAGCACGGCAGCGTG
CCGATAGGCCAGGGCGGCTGGATACCGGTGGCGCCGTCGGCGATCCCGTTCGATCCCCAGCACACGACCCCC
GAGGCTCTGAGCGAGGCGCAAATCGAGGCGCTGGTGCAGGCCTTCGTACGCGCCACCGAGCGCTCCCTGGCT
GCCGGCTTCAAGGTCGCGGAGGTGCATGCGGCCCACGGCTACCTGTTGCATCAGTTCCTCTCGCCGCTGTCG
AACCAGCGTCGCGACCAGTACGGCGGCTGCTTCGAGAACCGCATCCGCCTGCTTCTGCAGGTCACCGCCGCG
GTGCGCAAGGCCTGGCCGGAAGAGTTGCCGCTATTCGTGCGGCTATCCGCCACCGACTGGGTGGAGGATGGC
TGGAACCCCGACGAGACCGTGGAACTGGCCCGGCGCCTGAAGGACCTGGGCGTGGACCTGATCGACGTGTCT
TCCGGCGGTACCGCAGCGAATGCGGAAATCCCGGTAGGACCGGGCTACCAGACCGAGTTCGCCGAACGGGTG
AAGAAGGAGGCCGGCATCGCCAGCGGAACGGTGGGCATGATCACCGAGCCGGTGCAGGCCGAGCATATCCTG
CGCACCGGCCAGGCCGACCTGATCCTGCTTGCCCGTGAACTGCTGCGCGATCCGTACTGGCCGTTGCACGCC
GCCGACGAACTGCGCAACGAGCAGATGCCCTGGCCGCCGCAGTACCTGCGAGCCGCTCATCGCAGCACGCCG
CCGCGCAAATCCCTGGAAATGCAGTGA
Translation:
MSLLFEPLSLRQITLPNRIAVSPMCQYSAQEGLANDWHLVHLGSRAVGGAGLVIVEATAVLPEGRITADDLG
IWSDAHVEPLHRITRFIESQGAVAGVQLAHAGRKASTWRPWLGKHGSVPIGQGGWIPVAPSAIPFDPQHTTP
EALSEAQIEALVQAFVRATERSLAAGFKVAEVHAAHGYLLHQFLSPLSNQRRDQYGGCFENRIRLLLQVTAA
VRKAWPEELPLFVRLSATDWVEDGWNPDETVELARRLKDLGVDLIDVSSGGTAANAEIPVGPGYQTEFAERV
KKEAGIASGTVGMITEPVQAEHILRTGQADLILLARELLRDPYWPLHAADELRNEQMPWPPQYLRAAHRSTP
PRKSLEMQ*
AnnotationID:1736GeneID:1727
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:07
Gene Name:
Confidence Code:3
GeneProduct:putative oxidoreductase, FAD/FMN-binding
Cell Localization:()
Synonyms:PA3723
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1902,pfam00724
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55010.1| (AE016861) xenobiotic reductase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 368

 Score =  582 bits (1501), Expect = e-166
 Identities = 280/364 (76%), Positives = 310/364 (85%)

>gb|AAF11740.1|AE002052_3 (AE002052) NADH-dependent flavin oxidoreductase, putative
           [Deinococcus radiodurans]
          Length = 370

 Score =  380 bits (977), Expect = e-105
 Identities = 193/339 (56%), Positives = 231/339 (68%), Gaps = 2/339 (0%)








 
Structural Features:
COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family 
[Energy production and conversion]
CD-Length = 363 residues,  96.1% aligned
Score =  386 bits (993), Expect = 2e-108
Identities = 165/361 (45%), Positives = 207/361 (57%), Gaps = 19/361 (5%)

pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family.
CD-Length = 335 residues,  99.7% aligned
Score =  251 bits (642), Expect = 1e-67
Identities = 120/346 (34%), Positives = 171/346 (49%), Gaps = 18/346 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3457




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20604




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31833




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1727_cdd.html


    		




 
URL:

















    ReferenceID:38104




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1727_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1727
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3034
                           PA3723_tr
                           translation of PA3723
                           368
                           98.91
                           99.18
                           0
                           1904.0
     

     
     
93873
                           gb|AAG07110.1|AE004791_7
                           (AE004791) probable FMN oxidoreductase [Pseudomonas aeruginosa PAO1]
                           368
                           98.91
                           99.18
                           0
                           1904.0
     

     
     
93874
                           gb|AAO55010.1|
                           (AE016861) xenobiotic reductase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           369
                           75.88
                           84.82
                           2
                           1496.0
     

     
     
93875
                           gb|AAN67100.1|AE016338_10
                           (AE016779) xenobiotic reductase, putative [Pseudomonas putida KT2440]
                           369
                           74.79
                           84.01
                           2
                           1463.0
     

     
     
93877
                           dbj|BAC91769.1|
                           (AP006581) glr3828 [Gloeobacter violaceus PCC 7421]
                           369
                           63.95
                           72.62
                           16
                           1188.0
     

     






      

          
GC ORFID: 44729How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3723Glimmer Score: 

          
Start: 3564750Stop: 3563644

          
Length: 1107


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3723 translation of PA3723Homolog Bit Score 738.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4576 (ORF: BLASTX 572.0), psyr_15may02_Scaffold12_revised_gene1974 (ORF: BLASTX 136.0), t_PA3723 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTCTGCTGTTCGAGCCTCTTAGCCTGCGTCAAATCACCTTGCCCAACCGCATCGCCGTATCGCCCATG 
TGCCAGTATTCGGCGCAGGAGGGCCTGGCCAACGACTGGCATCTCGTGCACCTGGGCAGTCGCGCGGTGGGC 
GGCGCCGGCCTGGTGATCGTCGAAGCCACCGCGGTGTTGCCCGAGGGGCGCATCACCGCCGACGACCTCGGC 
ATCTGGAGCGACGCGCATGTCGAGCCGTTGCATCGCATCACCCGTTTCATCGAGTCCCAGGGCGCGGTCGCC 
GGGGTCCAGCTGGCCCACGCCGGGCGCAAGGCGAGTACCTGGCGGCCGTGGCTGGGCAAGCACGGCAGCGTG 
CCGATAGGCCAGGGCGGCTGGATACCGGTGGCGCCGTCGGCGATCCCGTTCGATCCCCAGCACACGACCCCC 
GAGGCTCTGAGCGAGGCGCAAATCGAGGCGCTGGTGCAGGCCTTCGTACGCGCCACCGAGCGCTCCCTGGCT 
GCCGGCTTCAAGGTCGCGGAGGTGCATGCGGCCCACGGCTACCTGTTGCATCAGTTCCTCTCGCCGCTGTCG 
AACCAGCGTCGCGACCAGTACGGCGGCTGCTTCGAGAACCGCATCCGCCTGCTTCTGCAGGTCACCGCCGCG 
GTGCGCAAGGCCTGGCCGGAAGAGTTGCCGCTATTCGTGCGGCTATCCGCCACCGACTGGGTGGAGGATGGC 
TGGAACCCCGACGAGACCGTGGAACTGGCCCGGCGCCTGAAGGACCTGGGCGTGGACCTGATCGACGTGTCT 
TCCGGCGGTACCGCAGCGAATGCGGAAATCCCGGTAGGACCGGGCTACCAGACCGAGTTCGCCGAACGGGTG 
AAGAAGGAGGCCGGCATCGCCAGCGGAACGGTGGGCATGATCACCGAGCCGGTGCAGGCCGAGCATATCCTG 
CGCACCGGCCAGGCCGACCTGATCCTGCTTGCCCGTGAACTGCTGCGCGATCCGTACTGGCCGTTGCACGCC 
GCCGACGAACTGCGCAACGAGCAGATGCCCTGGCCGCCGCAGTACCTGCGAGCCGCTCATCGCAGCACGCCG 
CCGCGCAAATCCCTGGAAATGCAGTGA