ViewGene
Locus Name:
GeneID:
Location:

GeneID:1726
TrivialName: PA14_40880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40880
PAO1 Ortholog Locus:PA1829
Sequence Length:1071
Protein Length:356
Start: 3645827
Stop: 3646897
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05218.1|AE004609_5 (AE004609) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 355/356 (99%), Positives = 356/356 (100%)
Sequence:
ATGTCGCTGACCGACCAATCCACTCGCATCCGCGCCGGCGAAGAACTTGACGCCGCCGTCATCGACCCGTAC
CTGAAAGCCCATATCCCCGGCCTCGAAGGCACCCCGAAGATCAGCCAGTTCCCCGGTGGCGCGTCCAACCTG
ACCTACCTGATCGAGTATCCGCGCCAGGAGTTCGTCCTGCGTCGCCCGCCATTCGGCCACAAGGCCAAGTCG
GCCCACGACATGGGCCGCGAATACCGCATCCTGAACCAGTTGAACGCAGGCTTCCCCTACTGCCCGAAAGCC
TACCTCTACTGCACCGACGAGTCGGTGATCGGCGCCGAGTTCTACGTCATGGAACGGGTCAAGGGCATCATC
CTGCGCGCCGAACTGCCGCCTGAGCTGAATCTCGACGAACAACAGACCCGCAGCCTGTGCAAGAGCTTCATC
GACAAGTTCGTCGAACTGCACAACGTCGACTACGCCGCCTGCGGACTGGCCGACCTGGGCCGCCCGGACGGC
TACGTGCAGCGCCAGATCGCCGGCTGGACCGACCGCTACGAGAAGGCCCTGACCCCCGACGCGCCGCTCTGG
GAACCGGTCAAGGCCTGGCTCAAGGACAAGCAGCCGGCCGATCACCACAAGCCGGGCATCGTGCACAACGAC
TACCGCTTCGACAACGTGATCCTCGACCCGGACAACCCGATGCAGATCATCGGCGTGCTGGACTGGGAACTG
GCCACCCTCGGCGATCCGCTGATGGACCTCGGCAACACCCTCGCCTACTGGGTGGAAGCCGGCGACCCGGCT
CCGGTGCAACTGACCCGCCGCCAGCCCAGCCACCTGCCGGGCATGCTGACCCGCCGGGAGTTCGCCGACTAC
TACGCCGAGCGGGCCGGGATCCCGCCGATCGACAACCTGGACTTCTACTACACCTATGGCCTGTTCCGTCTT
GCCGGCATCGTCCAGCAGATCTACTACCGCTACTACCACGGGCAGACCCAGGACAAGCGTTTCGCCCAGTTC
GTGCAGATGAACAAGCTGCTGGAGCAGATGAGCCTGCAGGCCATCGAGCGCTCCCGCCTGTAA
Translation:
MSLTDQSTRIRAGEELDAAVIDPYLKAHIPGLEGTPKISQFPGGASNLTYLIEYPRQEFVLRRPPFGHKAKS
AHDMGREYRILNQLNAGFPYCPKAYLYCTDESVIGAEFYVMERVKGIILRAELPPELNLDEQQTRSLCKSFI
DKFVELHNVDYAACGLADLGRPDGYVQRQIAGWTDRYEKALTPDAPLWEPVKAWLKDKQPADHHKPGIVHND
YRFDNVILDPDNPMQIIGVLDWELATLGDPLMDLGNTLAYWVEAGDPAPVQLTRRQPSHLPGMLTRREFADY
YAERAGIPPIDNLDFYYTYGLFRLAGIVQQIYYRYYHGQTQDKRFAQFVQMNKLLEQMSLQAIERSRL*
AnnotationID:1735GeneID:1726
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 12:12:28
Gene Name:
Confidence Code:3
GeneProduct:putative aminoglycoside phosphotransferase
Cell Localization:()
Synonyms:PA1829
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3173,pfam01636
Secondary Functional Category(ies):
EC Number:2.7.1.95
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAB46787.1| (AL939109) putative phosphotransferase [Streptomyces coelicolor
           A3(2)]
          Length = 341

 Score =  189 bits (480), Expect = 2e-47
 Identities = 121/329 (36%), Positives = 177/329 (53%), Gaps = 16/329 (4%)







 
Structural Features:
COG3173, COG3173, Predicted aminoglycoside phosphotransferase
CD-Length = 321 residues,  99.1% aligned
Score =  276 bits (707), Expect = 2e-75
Identities = 119/337 (35%), Positives = 161/337 (47%), Gaps = 22/337 (6%)

pfam01636, APH, Phosphotransferase enzyme family. 
CD-Length = 241 residues, 100.0% aligned
Score =  160 bits (405), Expect = 3e-40
Identities = 81/253 (32%), Positives = 102/253 (40%), Gaps = 15/253 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20602




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37095




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1726_cdd.html


    		




 
URL:

















    ReferenceID:38181




  
Author/Investigator(s):
        Okii M, Iyobe S, Mitsuhashi S.





  
Title:
        Mapping of the gene specifying aminoglycoside 3'-phosphotransferase II on the Pseudomonas aeruginosa chromosome.




  
PubMed:
        6307974


MedLine:
        




    
Source:
J Bacteriol. 1983 Aug;155(2):643-9.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=6307974

















    ReferenceID:38182




  
Author/Investigator(s):
        Thaller MC, Schippa S, Bonci A, Cresti S, Rossolini GM.





  
Title:
        Identification of the gene (aphA) encoding the class B acid phosphatase/phosphotransferase of Escherichia coli MG1655 and characterization of its product.




  
PubMed:
        9011040


MedLine:
        




    
Source:
FEMS Microbiol Lett. 1997 Jan 15;146(2):191-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9011040&query_hl=5

















    ReferenceID:38183




  
Author/Investigator(s):
        Trieu-Cuot P, Klier A, Courvalin P.





  
Title:
        DNA sequences specifying the transcription of the streptococcal kanamycin resistance gene in Escherichia coli and Bacillus subtilis.




  
PubMed:
        3920478


MedLine:
        




    
Source:
Mol Gen Genet. 1985;198(2):348-52.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3920478&query_hl=5









           
Homologs By Global Alignment 

           

       



     
Gene ID:1726
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3033
                           PA1829_tr
                           translation of PA1829
                           356
                           99.71
                           99.99
                           0
                           1905.0
     

     
     
93868
                           gb|AAG05218.1|AE004609_5
                           (AE004609) hypothetical protein PA1829 [Pseudomonas aeruginosa PAO1]
                           356
                           99.71
                           99.99
                           0
                           1905.0
     

     
     
93869
                           gb|AAN69519.1|AE016585_11
                           (AE016788) conserved hypothetical protein [Pseudomonas putida KT2440]
                           356
                           79.49
                           88.48
                           1
                           1562.0
     

     
     
93870
                           gb|AAO56225.1|
                           (AE016865) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           356
                           78.08
                           86.79
                           1
                           1499.0
     

     
     
93871
                           gb|AAF12184.1|AE001862_10
                           (AE001862) conserved hypothetical protein [Deinococcus radiodurans] [Deinococcus radiodurans R1]
                           396
                           35.85
                           51.26
                           50
                           630.0
     

     






      

          
GC ORFID: 44728How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1829Glimmer Score: 

          
Start: 1308083Stop: 1307013

          
Length: 1071


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1829 translation of PA1829Homolog Bit Score 738.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene116 (ORF: BLASTX 592.0), t_PA1829 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTGACCGACCAATCCACTCGCATCCGCGCCGGCGAAGAACTTGACGCCGCCGTCATCGACCCGTAC 
CTGAAAGCCCATATCCCCGGCCTCGAAGGCACCCCGAAGATCAGCCAGTTCCCCGGTGGCGCGTCCAACCTG 
ACCTACCTGATCGAGTATCCGCGCCAGGAGTTCGTCCTGCGTCGCCCGCCATTCGGCCACAAGGCCAAGTCG 
GCCCACGACATGGGCCGCGAATACCGCATCCTGAACCAGTTGAACGCAGGCTTCCCCTACTGCCCGAAAGCC 
TACCTCTACTGCACCGACGAGTCGGTGATCGGCGCCGAGTTCTACGTCATGGAACGGGTCAAGGGCATCATC 
CTGCGCGCCGAACTGCCGCCTGAGCTGAATCTCGACGAACAACAGACCCGCAGCCTGTGCAAGAGCTTCATC 
GACAAGTTCGTCGAACTGCACAACGTCGACTACGCCGCCTGCGGACTGGCCGACCTGGGCCGCCCGGACGGC 
TACGTGCAGCGCCAGATCGCCGGCTGGACCGACCGCTACGAGAAGGCCCTGACCCCCGACGCGCCGCTCTGG 
GAACCGGTCAAGGCCTGGCTCAAGGACAAGCAGCCGGCCGATCACCACAAGCCGGGCATCGTGCACAACGAC 
TACCGCTTCGACAACGTGATCCTCGACCCGGACAACCCGATGCAGATCATCGGCGTGCTGGACTGGGAACTG 
GCCACCCTCGGCGATCCGCTGATGGACCTCGGCAACACCCTCGCCTACTGGGTGGAAGCCGGCGACCCGGCT 
CCGGTGCAACTGACCCGCCGCCAGCCCAGCCACCTGCCGGGCATGCTGACCCGCCGGGAGTTCGCCGACTAC 
TACGCCGAGCGGGCCGGGATCCCGCCGATCGACAACCTGGACTTCTACTACACCTATGGCCTGTTCCGTCTT 
GCCGGCATCGTCCAGCAGATCTACTACCGCTACTACCACGGGCAGACCCAGGACAAGCGTTTCGCCCAGTTC 
GTGCAGATGAACAAGCTGCTGGAGCAGATGAGCCTGCAGGCCATCGAGCGCTCCCGCCTGTAA