ViewGene
Locus Name:
GeneID:
Location:

GeneID:1725
TrivialName: PA14_52760
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52760
PAO1 Ortholog Locus:PA0891
Sequence Length:1113
Protein Length:370
Start: 4677109
Stop: 4675997
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04280.1|AE004523_8 (AE004523) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 367/370 (99%), Positives = 368/370 (99%)
Sequence:
ATGGAGCGTATCGACCACCTGCTGCCGTGGAGCACCCTGGGAAGCGAGAAGCGCCTGAGCGTGTTCCGCTTC
GGCTGCGGCGCGCGCAAGGTCTACATCCAGTCCAGCCTGCACGCCGACGAGCTGCCGGGCATGCGCACCGCC
TGGGAGCTGAAGCAGCGGTTGCGCCTGCTGGAGGCGGAAGGCCGCCTGCGCGGCACCGTCGAGCTGGTGCCG
GTGGCCAATCCGGTCGGTCTCGGGCAGATGATCCAGGCGCTGCACCAGGGACGCTTCGAAATGAGCAGCGGG
CGCAACTTCAACCGCGATTTCCCCGACCTGCTGGACGCGGTGATCGACAGTGTCGGCGAGCGTCTCGGCAGC
GATCCGGCGGCCAATGTCGCGCTGGTCCGCCAGGCCCTGCGCGCGGCGCTGGACGCCCTGCCGCCGGCGACC
TCGGAACTGGAGGGCATGCAGCGCCTGCTCTATCGCCACGCCTGCGACGCCGACCTGGTGCTCGACCTGCAT
TGCGACTTCGAGGCCGCCATCCATCTCTATACCCTGCCGCAGCAATGGCCCACCTTCGCCTCCCTGGCCGCG
CGCCTGGGCGCCGCCGTCGGGCTGCTCGCCGAGGAGTCCGGCGGCGGTTCCTTCGACGAGGCCTGCTCGGTG
CCGTGGCTGCGCCTGTCGCGCCTGTATCCGCGCGCCGAGCTGCCGCTGGCCTGCCTGGCGACCACCGTCGAA
CTCGGCGGCCAGGCCGATACCACGGCGCAGCAGGCCGAGGCCAACGCCGCGGCGATCCTGGCCTTCCTCGCC
GAGCAGGGCTTCGTCAAGGGCGAATGGCCGGCGGCGCCCGAAGCCTGCTGCGAAGGCTTGCCCTTCGAGGGC
ACCGAATACGTCCACGCCCCGCATACCGGCGTGGTGAGTTTCCTGCGCCGGCCGGGCGAATGGGTGGAGGCG
GGCGAACCGCTGTTCCAGGTCATCGATCCCCTGGCCGACCGTGCCAGCACCGTGTGCGCCGGGGTTTCCGGC
GTGCTTTTCGCCATCGAACGGATGCGCTACGCGCAGCCGGGACTCTGGCTGGCCAAGGTGGCCGGTCGTCAA
CCGATCCGTCAGGGACGCTTGCTCAGCGACTGA
Translation:
MERIDHLLPWSTLGSEKRLSVFRFGCGARKVYIQSSLHADELPGMRTAWELKQRLRLLEAEGRLRGTVELVP
VANPVGLGQMIQALHQGRFEMSSGRNFNRDFPDLLDAVIDSVGERLGSDPAANVALVRQALRAALDALPPAT
SELEGMQRLLYRHACDADLVLDLHCDFEAAIHLYTLPQQWPTFASLAARLGAAVGLLAEESGGGSFDEACSV
PWLRLSRLYPRAELPLACLATTVELGGQADTTAQQAEANAAAILAFLAEQGFVKGEWPAAPEACCEGLPFEG
TEYVHAPHTGVVSFLRRPGEWVEAGEPLFQVIDPLADRASTVCAGVSGVLFAIERMRYAQPGLWLAKVAGRQ
PIRQGRLLSD*
AnnotationID:1734GeneID:1725
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 17:05:58
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0891, aotO
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3608
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similarity to predicted deacylases.






 
Structural Features:
COG3608, Predicted deacylase [General function prediction only]
       CD-Length = 331 residues, 100.0% aligned
       Score =  240 bits (613), Expect = 5e-64






   
Genomic Context:
Within arginine-ornithine uptake locus, adjacent to arginine-ornithine catabolic locus. 






   
Comment:


















    ReferenceID:3453




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20600




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32000




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1725
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3032
                           PA0891_tr
                           translation of PA0891
                           370
                           99.18
                           99.45
                           0
                           1906.0
     

     
     
93862
                           gb|AAG04280.1|AE004523_8
                           (AE004523) hypothetical protein PA0891 [Pseudomonas aeruginosa PAO1]
                           370
                           99.18
                           99.45
                           0
                           1906.0
     

     
     
93863
                           gb|AAC71073.1|
                           (AF012537) AotO [Pseudomonas aeruginosa]
                           370
                           99.18
                           99.45
                           0
                           1906.0
     

     
     
93864
                           gb|AAO55348.1|
                           (AE016862) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           370
                           67.02
                           81.62
                           0
                           1360.0
     

     
     
93865
                           gb|AAN66729.1|AE016300_14
                           (AE016778) aotO-related protein [Pseudomonas putida KT2440]
                           372
                           45.96
                           58.87
                           3
                           765.0
     

     






      

          
GC ORFID: 44727How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0891Glimmer Score: 

          
Start: 276798Stop: 277910

          
Length: 1113


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0891 translation of PA0891Homolog Bit Score 738.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7811 (ORF: BLASTX 525.0), psyr_15may02_Scaffold5_revised_gene6102 (ORF: BLASTX 286.0), t_PA0891 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAGCGTATCGACCACCTGCTGCCGTGGAGCACCCTGGGAAGCGAGAAGCGCCTGAGCGTGTTCCGCTTC 
GGCTGCGGCGCGCGCAAGGTCTACATCCAGTCCAGCCTGCACGCCGACGAGCTGCCGGGCATGCGCACCGCC 
TGGGAGCTGAAGCAGCGGTTGCGCCTGCTGGAGGCGGAAGGCCGCCTGCGCGGCACCGTCGAGCTGGTGCCG 
GTGGCCAATCCGGTCGGTCTCGGGCAGATGATCCAGGCGCTGCACCAGGGACGCTTCGAAATGAGCAGCGGG 
CGCAACTTCAACCGCGATTTCCCCGACCTGCTGGACGCGGTGATCGACAGTGTCGGCGAGCGTCTCGGCAGC 
GATCCGGCGGCCAATGTCGCGCTGGTCCGCCAGGCCCTGCGCGCGGCGCTGGACGCCCTGCCGCCGGCGACC 
TCGGAACTGGAGGGCATGCAGCGCCTGCTCTATCGCCACGCCTGCGACGCCGACCTGGTGCTCGACCTGCAT 
TGCGACTTCGAGGCCGCCATCCATCTCTATACCCTGCCGCAGCAATGGCCCACCTTCGCCTCCCTGGCCGCG 
CGCCTGGGCGCCGCCGTCGGGCTGCTCGCCGAGGAGTCCGGCGGCGGTTCCTTCGACGAGGCCTGCTCGGTG 
CCGTGGCTGCGCCTGTCGCGCCTGTATCCGCGCGCCGAGCTGCCGCTGGCCTGCCTGGCGACCACCGTCGAA 
CTCGGCGGCCAGGCCGATACCACGGCGCAGCAGGCCGAGGCCAACGCCGCGGCGATCCTGGCCTTCCTCGCC 
GAGCAGGGCTTCGTCAAGGGCGAATGGCCGGCGGCGCCCGAAGCCTGCTGCGAAGGCTTGCCCTTCGAGGGC 
ACCGAATACGTCCACGCCCCGCATACCGGCGTGGTGAGTTTCCTGCGCCGGCCGGGCGAATGGGTGGAGGCG 
GGCGAACCGCTGTTCCAGGTCATCGATCCCCTGGCCGACCGTGCCAGCACCGTGTGCGCCGGGGTTTCCGGC 
GTGCTTTTCGCCATCGAACGGATGCGCTACGCGCAGCCGGGACTCTGGCTGGCCAAGGTGGCCGGTCGTCAA 
CCGATCCGTCAGGGACGCTTGCTCAGCGACTGA