ViewGene
Locus Name:
GeneID:
Location:

GeneID:1724
TrivialName: PA14_02270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_02270
PAO1 Ortholog Locus:PA0180
Sequence Length:1173
Protein Length:390
Start: 204689
Stop: 203517
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03570.1|AE004456_1 (AE004456) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 384/390 (98%), Positives = 386/390 (98%)
Sequence:
ATGCGCGAGTCCCTCGGTGTTTCGTTACCATCCCGGCCCCTGCTGCTGAAGCTGGGCCTGCTTTCCCTACCC
TGGGCGTTGTGCGCCGGGCTGCATGCCGTCGGCCTCGGCGTCTGGCTGGCCCTGGCGCTCGGTTGGTTCGCC
AGCCTGGCCATGCTCTTCCTCCTCCTGCGCGACCCTCGGCAAGCGGTAGCGAATGCCAGCCCGCAGGCGGAT
GCCGCTTCGCCGGCCTGGAGCGCGGCGCAACGGGCGCTCGCCGACGAAACCGCGCAACTGGACGGCCACGCC
CGGCAGATCGATGAACTGCTGCATTCGGCGATCCGCCAGCTCAGCGACAGCTTCCACGGCCTCGCCGAACGC
ATCGATACCCAGCGCGGCCTGTCCCATTCACTGATCGAGCGCTACGACGGGCGCGGCCAGGTCGACGAAGGC
ATCAACTTCCAGGACTTCATCAGGACCACCCAGCAGACCCTCAGCCTGTTCGTCGAGGCTACCCTGGAAACC
AGCCGGACCTCGCAGCAACTGGTGGAACGCATGGACCAGGTGCGCCTGAAGATCACCGAGATCCTGCAGTCG
ACCCAGGACATGGACGCCATCGCCAAGCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCCGCCCGA
GCCGGCGAGAGCGGCCGCGGCTTCGCCGTGGTCGCCGATGAGGTGCGCGCGCTGTCGACCCGCTCCACGGAG
TTTTCCGCCGCCATCCGCAAGCACGTCGACGTGGTCCACCACGAGATCCAGGACGCCGAGAGCGCGATCTCG
CAACTGGCCGACAAGGACATGTCCTTCGCCCTCGATTCCAAGCAGAAGATCCAGGGCATGCTCGATGACCTG
GAGGCGATGAACCGGCACACCCTGAAGGTCATCCACGAACTGGACCGGCTCTCGCTGGAAGTCGGCCAGGGC
GTCGATGCGGCGGTCACCGCCCTGCAATTCCAGGACATGGGCAGCCAGTTGCTCGGCCAGATGCGCAAGCAC
CATGCGCGTCTTGGCGCCTTCGCCCTCGGCCTCGGCGCGCTGGAGGCGCGGCCGCGCCAGGAATGGCCCGAA
CGGGTCGCACGGGAGGTCGAGGAACTGCGCCGGCCCTTGCCCAGCCCGGTGAGCCAGAACAGCGTCAACGTG
GGCGAAGTGGAATTGTTCTGA
Translation:
MRESLGVSLPSRPLLLKLGLLSLPWALCAGLHAVGLGVWLALALGWFASLAMLFLLLRDPRQAVANASPQAD
AASPAWSAAQRALADETAQLDGHARQIDELLHSAIRQLSDSFHGLAERIDTQRGLSHSLIERYDGRGQVDEG
INFQDFIRTTQQTLSLFVEATLETSRTSQQLVERMDQVRLKITEILQSTQDMDAIAKQTNLLALNAAIEAAR
AGESGRGFAVVADEVRALSTRSTEFSAAIRKHVDVVHHEIQDAESAISQLADKDMSFALDSKQKIQGMLDDL
EAMNRHTLKVIHELDRLSLEVGQGVDAAVTALQFQDMGSQLLGQMRKHHARLGAFALGLGALEARPRQEWPE
RVAREVEELRRPLPSPVSQNSVNVGEVELF*
AnnotationID:1733GeneID:1724
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 08:08:38
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA0180
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00283
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer).
CD-Length = 262 residues,  79.4% aligned
Score = 93.8 bits (233), Expect = 3e-20
Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 7/211 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20598




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33550




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1724_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1724
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3031
                           PA0180_tr
                           translation of PA0180
                           390
                           98.46
                           98.97
                           0
                           1908.0
     

     
     
93861
                           gb|AAG03570.1|AE004456_1
                           (AE004456) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           390
                           98.46
                           98.97
                           0
                           1908.0
     

     






      

          
GC ORFID: 44726How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0180Glimmer Score: 

          
Start: 6006028Stop: 6004856

          
Length: 1173


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0180 translation of PA0180Homolog Bit Score 739.0

          
Other Homologs:  t_PA0180 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCGAGTCCCTCGGTGTTTCGTTACCATCCCGGCCCCTGCTGCTGAAGCTGGGCCTGCTTTCCCTACCC 
TGGGCGTTGTGCGCCGGGCTGCATGCCGTCGGCCTCGGCGTCTGGCTGGCCCTGGCGCTCGGTTGGTTCGCC 
AGCCTGGCCATGCTCTTCCTCCTCCTGCGCGACCCTCGGCAAGCGGTAGCGAATGCCAGCCCGCAGGCGGAT 
GCCGCTTCGCCGGCCTGGAGCGCGGCGCAACGGGCGCTCGCCGACGAAACCGCGCAACTGGACGGCCACGCC 
CGGCAGATCGATGAACTGCTGCATTCGGCGATCCGCCAGCTCAGCGACAGCTTCCACGGCCTCGCCGAACGC 
ATCGATACCCAGCGCGGCCTGTCCCATTCACTGATCGAGCGCTACGACGGGCGCGGCCAGGTCGACGAAGGC 
ATCAACTTCCAGGACTTCATCAGGACCACCCAGCAGACCCTCAGCCTGTTCGTCGAGGCTACCCTGGAAACC 
AGCCGGACCTCGCAGCAACTGGTGGAACGCATGGACCAGGTGCGCCTGAAGATCACCGAGATCCTGCAGTCG 
ACCCAGGACATGGACGCCATCGCCAAGCAGACCAACCTGCTCGCCCTCAACGCCGCCATCGAGGCCGCCCGA 
GCCGGCGAGAGCGGCCGCGGCTTCGCCGTGGTCGCCGATGAGGTGCGCGCGCTGTCGACCCGCTCCACGGAG 
TTTTCCGCCGCCATCCGCAAGCACGTCGACGTGGTCCACCACGAGATCCAGGACGCCGAGAGCGCGATCTCG 
CAACTGGCCGACAAGGACATGTCCTTCGCCCTCGATTCCAAGCAGAAGATCCAGGGCATGCTCGATGACCTG 
GAGGCGATGAACCGGCACACCCTGAAGGTCATCCACGAACTGGACCGGCTCTCGCTGGAAGTCGGCCAGGGC 
GTCGATGCGGCGGTCACCGCCCTGCAATTCCAGGACATGGGCAGCCAGTTGCTCGGCCAGATGCGCAAGCAC 
CATGCGCGTCTTGGCGCCTTCGCCCTCGGCCTCGGCGCGCTGGAGGCGCGGCCGCGCCAGGAATGGCCCGAA 
CGGGTCGCACGGGAGGTCGAGGAACTGCGCCGGCCCTTGCCCAGCCCGGTGAGCCAGAACAGCGTCAACGTG 
GGCGAAGTGGAATTGTTCTGA