ViewGene

Locus Name:
GeneID:
Location:

GeneID: 1723

TrivialName: PA14_69740

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_69740

PAO1 Ortholog Locus: PA5282

Sequence Length: 1170

Protein Length: 389

Start: 6220333

Stop: 6219164

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08667.1|AE004940_11 (AE004940) probable MFS transporter [Pseudomonas aeruginosa PAO1] Identities = 384/389 (98%), Positives = 385/389 (98%)

Sequence:

ATGAGCAATACCCGTCGCCACGCCGCATGCCTGGCCTTCGGCCTGTGCCTGATCACCTTGGCGGTGAACCTC
CAGGCGCCGCTGTACACCGCCTACGCGGAGCTTTCCGGCTACGGCGCGGCAGCCACCGCCAGCGCTTTCTCC
GGCTATGTGCTTGGCGTACTGCCGGTGCTGCTGGTACTCGGCGGGTTGTCCGATCGGATGGGGCGCAAGCCG
CCGATCGTCGTCGCGTTGCTGCTGTCGATGGTGGCCACCCTGGTGATGGCGCTCTGGCCGCGCCTGGAGGCG
CTCGGCGTGGCGCGCCTGTTGCTCGGCGTCGGCACGGCCCTGGCATCGGCCACCGGGACGGCCTACATGAGC
GAACTGATGGCGGGCGGGGATTCCCGCACCTCGGCCAACTGGGTGACCGCCAGCACCTCGCTCGGCTTCGGC
CTCGGCGCGGCACTGACCAGTCTGTTCCTGCTGTTCCGGGAGAGCCTGGTGCCCGGCAGCTTCTGGGTCCAG
CTGGGACTGGCCTGCGTGGCCCTGGCGGCGGTGGCGGGCCTGCCGGACGAGGCGCCGCGCGGGCGCGATACG
CCGATGCTGCGGCTGCCGTTCTTTCCCGCCGGCAGCCTGCCGTACGGCTTCTCGATCCTGCTGGCATGGGCC
ACTGTGGGCCTGGTCATCGCGGTCCTGCCTTCGCTGCTGGCGGCCCACGGGCTGGCGCGCTGGTCGGGCTTC
TCGACCTTCACCGTGATCAGCTGCGGCCTGCTGTTCCAGCCGCTGGCGCGGCGGATGGCGCCGGCCTCGGCG
ACCTGCCTGGGGCTGGTGATCCTGCCGCCGAGCTATGCCCTGCTGGCCTGGGGCGCGATCCACGGCTCACTG
GCTGCGGTGCTGTTCGGTGCGCTGGGCGCGAGCAGTTCCTGCTACGGCTTCACCTACCTGGGCGGGCTGTCG
GCGGTGAATGTCCTGGCCGGTGCGGAAAAGCCGCGGGCCAGCGCGGGCTACTTCCTGTTGGCCTACCTCGGC
TTCAGCCTGCCGGTGATCTTCACCGGACTGATCGCGGATCGCTTCGGTGCGTCGACGGCGTTGCTGCTTTTC
GGCGTGTCGCTGACGTTGGCTGCCGTTGCGGTGGCGCTTTCCATCTTGCGCGGGGTCGGGCGCTTCAAGGCC
AGCGCTTCGCGTGCCTAG

Translation:

MSNTRRHAACLAFGLCLITLAVNLQAPLYTAYAELSGYGAAATASAFSGYVLGVLPVLLVLGGLSDRMGRKP
PIVVALLLSMVATLVMALWPRLEALGVARLLLGVGTALASATGTAYMSELMAGGDSRTSANWVTASTSLGFG
LGAALTSLFLLFRESLVPGSFWVQLGLACVALAAVAGLPDEAPRGRDTPMLRLPFFPAGSLPYGFSILLAWA
TVGLVIAVLPSLLAAHGLARWSGFSTFTVISCGLLFQPLARRMAPASATCLGLVILPPSYALLAWGAIHGSL
AAVLFGALGASSSCYGFTYLGGLSAVNVLAGAEKPRASAGYFLLAYLGFSLPVIFTGLIADRFGASTALLLF
GVSLTLAAVAVALSILRGVGRFKASASRA*

AnnotationID:1732 GeneID:1723

AnnotatorUID: diggins

Modification Date/Time: 2005-03-16 08:08:20

Gene Name:

Confidence Code: 3

GeneProduct: putative MFS transporter

Cell Localization: ()

Synonyms: PA5282

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies): membrane protein

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:3449

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:20596

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34787

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 1723_cdd.html

URL:

Homologs By Global Alignment

Gene ID:1723

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3030 PA5282_tr translation of PA5282 389 98.71 98.97 0 1909.0

93860 gb|AAG08667.1|AE004940_11 (AE004940) probable MFS transporter [Pseudomonas aeruginosa PAO1] 389 98.71 98.97 0 1909.0

GC ORFID: `44725`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5282`	Glimmer Score:
Start: `5484020`	Stop: `5482851`
Length: `1170`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA5282 translation of PA5282`	Homolog Bit Score `739.0`
Other Homologs: `t_PA5282 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCAATACCCGTCGCCACGCCGCATGCCTGGCCTTCGGCCTGTGCCTGATCACCTTGGCGGTGAACCTC CAGGCGCCGCTGTACACCGCCTACGCGGAGCTTTCCGGCTACGGCGCGGCAGCCACCGCCAGCGCTTTCTCC GGCTATGTGCTTGGCGTACTGCCGGTGCTGCTGGTACTCGGCGGGTTGTCCGATCGGATGGGGCGCAAGCCG CCGATCGTCGTCGCGTTGCTGCTGTCGATGGTGGCCACCCTGGTGATGGCGCTCTGGCCGCGCCTGGAGGCG CTCGGCGTGGCGCGCCTGTTGCTCGGCGTCGGCACGGCCCTGGCATCGGCCACCGGGACGGCCTACATGAGC GAACTGATGGCGGGCGGGGATTCCCGCACCTCGGCCAACTGGGTGACCGCCAGCACCTCGCTCGGCTTCGGC CTCGGCGCGGCACTGACCAGTCTGTTCCTGCTGTTCCGGGAGAGCCTGGTGCCCGGCAGCTTCTGGGTCCAG CTGGGACTGGCCTGCGTGGCCCTGGCGGCGGTGGCGGGCCTGCCGGACGAGGCGCCGCGCGGGCGCGATACG CCGATGCTGCGGCTGCCGTTCTTTCCCGCCGGCAGCCTGCCGTACGGCTTCTCGATCCTGCTGGCATGGGCC ACTGTGGGCCTGGTCATCGCGGTCCTGCCTTCGCTGCTGGCGGCCCACGGGCTGGCGCGCTGGTCGGGCTTC TCGACCTTCACCGTGATCAGCTGCGGCCTGCTGTTCCAGCCGCTGGCGCGGCGGATGGCGCCGGCCTCGGCG ACCTGCCTGGGGCTGGTGATCCTGCCGCCGAGCTATGCCCTGCTGGCCTGGGGCGCGATCCACGGCTCACTG GCTGCGGTGCTGTTCGGTGCGCTGGGCGCGAGCAGTTCCTGCTACGGCTTCACCTACCTGGGCGGGCTGTCG GCGGTGAATGTCCTGGCCGGTGCGGAAAAGCCGCGGGCCAGCGCGGGCTACTTCCTGTTGGCCTACCTCGGC TTCAGCCTGCCGGTGATCTTCACCGGACTGATCGCGGATCGCTTCGGTGCGTCGACGGCGTTGCTGCTTTTC GGCGTGTCGCTGACGTTGGCTGCCGTTGCGGTGGCGCTTTCCATCTTGCGCGGGGTCGGGCGCTTCAAGGCC AGCGCTTCGCGTGCCTAG