ViewGene

Locus Name:
GeneID:
Location:

GeneID:1722
TrivialName: PA14_56870
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_56870
PAO1 Ortholog Locus:PA4373
Sequence Length:1095
Protein Length:364
Start: 5065754
Stop: 5066848
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07761.1|AE004853_4 (AE004853) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 361/364 (99%), Positives = 363/364 (99%)
Sequence:
ATGCTGCGACGTCATGTGATCGGCCTGGGCAGCCTGCTGCTCGGCGCCTTGTCCTTCGGCGGCTGGAGCTTC
AACCGCCAGGGTAGCCAACCGCTGGTGCTGTCGGCGCGCGACGACGCCGATGGCCAGCATTACGCGGTGGGC
TACCGCCTGGACGGCAAGTGCCAGTTCGCCACCCGCGTGGCCCAGCGCTGCCACGACATCGTCCAGCACCCG
AGCCTGCCGCTGGCGCTGTTCGTCGCCCGCCGGCCAGGCACCGAAAGCTACCTGATCGACCTGAACGACGGT
CGCCTGCTGCAGACCCTGGTCTCGCAGAAAGACCGCCACTTCTACGGCCACGGCGTGTTCCACCAGAGCGGC
GAGTGGCTCTACGCCACCGAGAACGACACTACCGATCCCGGTCGCGGCGTGCTCGGCGTCTACCGTTTCGAC
GGCGAGCGACTGCAGCACAGCGGCGAGATCTCCACCCACGGCCTCGGGCCGCACCAGGTTTCCTGGATGCCC
GACGGCGAGACCCTGGTAGTGGCCAACGGCGGCATTCGCACCGAGGCGGAAAGCCGGGTCGAGATGAACCTC
GACGCCATGGAGCCCAGCCTGGTGCTGATGCGCCGCGACGGCAATCTGCTGTCCAAGGAAACCCTGGCGCAG
CAGATGAACAGCGTCCGCCACCTGGCGATCGGTCGCGACGGCACCATCGTCGCCGGCCAGCAGTTCATGGGC
GATGCCCACGAACATGCCGACCTGCTGGCGATCAAGCGCCCCGGCCGTCCCTTCGAAGCCTTCCCGGTGGCC
GAGGAGCAGCGCCTGGCGATGGCCCAGTACACCGCCAGCGTGGCGATCCACGACGACCTGCGCCTGGTGGCC
CTGACCGCCCCGCGCGGCAACCGTTTCTTCATCTGGGACCTGGACAGCGGTGCCGTACGCCTCGACGCGCCG
TTGCCGGACTGCGCCGGCGTGGGCGCGGTGAAGAACGGCTTCGTCGTCACATCCGGACAGGGCCGTTGCCGC
TTCTACGACTGCCAGGGCGAGCGCATCGCCGCGCAACCGCTGGAGCTGCCTGCCGGCCTCTGGGACAACCAC
CTGCACCTGGCCTGA
Translation:
MLRRHVIGLGSLLLGALSFGGWSFNRQGSQPLVLSARDDADGQHYAVGYRLDGKCQFATRVAQRCHDIVQHP
SLPLALFVARRPGTESYLIDLNDGRLLQTLVSQKDRHFYGHGVFHQSGEWLYATENDTTDPGRGVLGVYRFD
GERLQHSGEISTHGLGPHQVSWMPDGETLVVANGGIRTEAESRVEMNLDAMEPSLVLMRRDGNLLSKETLAQ
QMNSVRHLAIGRDGTIVAGQQFMGDAHEHADLLAIKRPGRPFEAFPVAEEQRLAMAQYTASVAIHDDLRLVA
LTAPRGNRFFIWDLDSGAVRLDAPLPDCAGVGAVKNGFVVTSGQGRCRFYDCQGERIAAQPLELPAGLWDNH
LHLA*
AnnotationID:1731GeneID:1722
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 07:07:41
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4373
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3447
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17124
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1722_cdd.html
URL:
ReferenceID:20594
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:1722

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3029 PA4373_tr translation of PA4373 364 99.17 99.72 0 1907.0
93857 gb|AAG07761.1|AE004853_4 (AE004853) hypothetical protein PA4373 [Pseudomonas aeruginosa PAO1] 364 99.17 99.72 0 1907.0
93859 gb|AAN66533.1|AE016282_1 (AE016777) conserved hypothetical protein [Pseudomonas putida KT2440] 365 77.80 87.12 1 1529.0
93858 gb|AAO57819.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 365 77.26 88.21 1 1534.0
GC ORFID: 44724How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4373Glimmer Score:
Start: 4329430Stop: 4330524
Length: 1095
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4373 translation of PA4373Homolog Bit Score 739.0
Other Homologs: psyr_15may02_Scaffold12_revised_gene1981 (ORF: BLASTX 606.0), t_PA4373 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCGACGTCATGTGATCGGCCTGGGCAGCCTGCTGCTCGGCGCCTTGTCCTTCGGCGGCTGGAGCTTC
AACCGCCAGGGTAGCCAACCGCTGGTGCTGTCGGCGCGCGACGACGCCGATGGCCAGCATTACGCGGTGGGC
TACCGCCTGGACGGCAAGTGCCAGTTCGCCACCCGCGTGGCCCAGCGCTGCCACGACATCGTCCAGCACCCG
AGCCTGCCGCTGGCGCTGTTCGTCGCCCGCCGGCCAGGCACCGAAAGCTACCTGATCGACCTGAACGACGGT
CGCCTGCTGCAGACCCTGGTCTCGCAGAAAGACCGCCACTTCTACGGCCACGGCGTGTTCCACCAGAGCGGC
GAGTGGCTCTACGCCACCGAGAACGACACTACCGATCCCGGTCGCGGCGTGCTCGGCGTCTACCGTTTCGAC
GGCGAGCGACTGCAGCACAGCGGCGAGATCTCCACCCACGGCCTCGGGCCGCACCAGGTTTCCTGGATGCCC
GACGGCGAGACCCTGGTAGTGGCCAACGGCGGCATTCGCACCGAGGCGGAAAGCCGGGTCGAGATGAACCTC
GACGCCATGGAGCCCAGCCTGGTGCTGATGCGCCGCGACGGCAATCTGCTGTCCAAGGAAACCCTGGCGCAG
CAGATGAACAGCGTCCGCCACCTGGCGATCGGTCGCGACGGCACCATCGTCGCCGGCCAGCAGTTCATGGGC
GATGCCCACGAACATGCCGACCTGCTGGCGATCAAGCGCCCCGGCCGTCCCTTCGAAGCCTTCCCGGTGGCC
GAGGAGCAGCGCCTGGCGATGGCCCAGTACACCGCCAGCGTGGCGATCCACGACGACCTGCGCCTGGTGGCC
CTGACCGCCCCGCGCGGCAACCGTTTCTTCATCTGGGACCTGGACAGCGGTGCCGTACGCCTCGACGCGCCG
TTGCCGGACTGCGCCGGCGTGGGCGCGGTGAAGAACGGCTTCGTCGTCACATCCGGACAGGGCCGTTGCCGC
TTCTACGACTGCCAGGGCGAGCGCATCGCCGCGCAACCGCTGGAGCTGCCTGCCGGCCTCTGGGACAACCAC
CTGCACCTGGCCTGA