ViewGene

Locus Name:
GeneID:
Location:

GeneID:1721
TrivialName: PA14_29090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29090
PAO1 Ortholog Locus:PA2711
Sequence Length:1092
Protein Length:363
Start: 2517184
Stop: 2516093
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06099.1|AE004699_4 (AE004699) probable periplasmic spermidine/putrescine-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 362/363 (99%), Positives = 363/363 (100%)
Sequence:
ATGAAGACCCGCATCGCTTCCCTCACCCTCCTCGCCCTCGCTTGCGGCAGCGGCGCAACCCTCGCCGCGGAC
AACCTGAAGATCTACAACTGGTCCGAATACATCGCTCCCGAAACCGTGGCGAACTTCGCCAAGGAAACCGGC
ATCCAGGCCACCTACGACGTCTACGACAGCAACGAGACCCTCGACGGCAAGCTGATGACCGGCCAATCCGGC
TACGACGTGGTATTCCCGTCGAACCACTTCATGGCCAAGCAGATCCAGGCCGGCGCCCTGAAGAAGCTGGAC
AAGTCCCAGTTGCCCAACTGGAAGAACCTCAACCCGGTGCTGCTCAAGGCCCTGGAGGTCAACGATCCGGGC
AACCAGTACGGCTTCCCCTACCTCTGGGGCACCACCGGCATCGGCTACAACCCGGCGAAGATCAAGGCGGTG
CTCGGCGACGACGCGCCGCTGGACTCCTGGGATATCTTCTTCAAGCCCGAATACATGCAGAAACTGAGCAAG
TGCGGGGTGGCGGTGCTGGACAACGGCCCCGAGCTGCTGCCCATCACCCTCAACTACCTCGGCCTGCCACAC
CACAGCCAGAAGGCCGACGACTACAAGCAGGCCCAGGCGGCGCTGCTGAAGGTGCGCCCGTACATCCGCTAC
TTCCACTCCTCGAAGTACGTCAGCGACCTGGCCAACGGCGAGATCTGCATGGTGGTCGGTTTCTCCGGCGAC
ATCCTGCAGGCCGCGACCCGCGCCAAGGAGGCCAACAACGGCGTGGAAGTGCGCTACTCGACGCCGAAGGAA
GGCTCGCCGCTGTGGTTCGACATGGTCTCGATGCCGGTCGACGCGCCCGACGAGAAGGCCGGCTACGCCTTC
ATGAACTACCTGCTGCGTCCCGAGGTGATGGCGGCGATCAGCAACCATGTGCACTACGCCAACGGCAACCTG
GCCGCCGACCCGCTGGTGGACGCCGAGATCAAGGCCGACCCGGCGATCTACCCGCCGCAGGAGAAGATGGCC
AAGCTGTTCGCCCTGGAATCCATGCCGCAGAAGATCGACCGCGTGCGCACGCGCACCTGGAACACGGTGAAG
ACCGGCAAGTGA
Translation:
MKTRIASLTLLALACGSGATLAADNLKIYNWSEYIAPETVANFAKETGIQATYDVYDSNETLDGKLMTGQSG
YDVVFPSNHFMAKQIQAGALKKLDKSQLPNWKNLNPVLLKALEVNDPGNQYGFPYLWGTTGIGYNPAKIKAV
LGDDAPLDSWDIFFKPEYMQKLSKCGVAVLDNGPELLPITLNYLGLPHHSQKADDYKQAQAALLKVRPYIRY
FHSSKYVSDLANGEICMVVGFSGDILQAATRAKEANNGVEVRYSTPKEGSPLWFDMVSMPVDAPDEKAGYAF
MNYLLRPEVMAAISNHVHYANGNLAADPLVDAEIKADPAIYPPQEKMAKLFALESMPQKIDRVRTRTWNTVK
TGK*
AnnotationID:1730GeneID:1721
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 06:06:11
Gene Name:
Confidence Code:3
GeneProduct:putative periplasmic spermidine/putrescine-binding protein
Cell Localization:()
Synonyms:potF4
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0687
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66498.1|AE016279_1 (AE016777) periplasmic polyamine-binding protein, putative
           [Pseudomonas putida KT2440]
          Length = 359

 Score =  551 bits (1421), Expect = e-156
 Identities = 262/362 (72%), Positives = 303/362 (83%), Gaps = 4/362 (1%)

>gb|AAO56285.1| (AE016865) putrescine ABC transporter, periplasmic
           putrescine-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 359

 Score =  444 bits (1143), Expect = e-124
 Identities = 207/363 (57%), Positives = 272/363 (74%), Gaps = 5/363 (1%)

>gb|AAC73941.1| (AE000187) periplasmic putrescine-binding protein; permease protein
           [Escherichia coli K12]
          Length = 370

 Score =  423 bits (1087), Expect = e-118
 Identities = 206/365 (56%), Positives = 266/365 (72%), Gaps = 3/365 (0%)

Structural Features:
COG0687, PotD, Spermidine/putrescine-binding periplasmic protein 
[Amino acid transport and metabolism] 
CD-Length = 363 residues,  96.7% aligned
Score =  333 bits (856), Expect = 1e-92
Identities = 158/360 (43%), Positives = 208/360 (57%), Gaps = 10/360 (2%)
Genomic Context:
Comment:
other posssible gene name: potF2
ReferenceID:3445
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20592
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36328
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1721_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1721

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3024 PA2711_tr translation of PA2711 363 99.72 99.99 0 1907.0
93803 gb|AAG06099.1|AE004699_4 (AE004699) probable periplasmic spermidine/putrescine-binding protein [Pseudomonas aeruginosa PAO1] 363 99.72 99.99 0 1907.0
93804 gb|AAN66498.1|AE016279_1 (AE016777) periplasmic polyamine-binding protein, putative [Pseudomonas putida KT2440] 363 72.17 83.47 4 1424.0
93807 gb|AAK15488.1|AF323694_3 (AF323694) PotF2 [Pseudomonas fluorescens] 368 57.33 73.91 8 1124.0
93805 gb|AAO56285.1| (AE016865) putrescine ABC transporter, periplasmic putrescine-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 364 56.86 74.72 6 1147.0
GC ORFID: 44723How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2711Glimmer Score:
Start: 2436742Stop: 2437833
Length: 1092
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2711 translation of PA2711Homolog Bit Score 739.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7441 (ORF: BLASTX 444.0), t_PA0301 (ORF: BLASTX 438.0), t_PA0300 (ORF: BLASTX 427.0), t_PA1410 (ORF: BLASTX 426.0), psyr_15may02_Scaffold6_revised_gene6512 (ORF: BLASTX 420.0), psyr_15may02_Scaffold6_revised_gene6511 (ORF: BLASTX 415.0), t_PA2592 (ORF: BLASTX 384.0), t_PA2711 (ORF: GLIMMER)
GC ORF Sequence
ATGAAGACCCGCATCGCTTCCCTCACCCTCCTCGCCCTCGCTTGCGGCAGCGGCGCAACCCTCGCCGCGGAC
AACCTGAAGATCTACAACTGGTCCGAATACATCGCTCCCGAAACCGTGGCGAACTTCGCCAAGGAAACCGGC
ATCCAGGCCACCTACGACGTCTACGACAGCAACGAGACCCTCGACGGCAAGCTGATGACCGGCCAATCCGGC
TACGACGTGGTATTCCCGTCGAACCACTTCATGGCCAAGCAGATCCAGGCCGGCGCCCTGAAGAAGCTGGAC
AAGTCCCAGTTGCCCAACTGGAAGAACCTCAACCCGGTGCTGCTCAAGGCCCTGGAGGTCAACGATCCGGGC
AACCAGTACGGCTTCCCCTACCTCTGGGGCACCACCGGCATCGGCTACAACCCGGCGAAGATCAAGGCGGTG
CTCGGCGACGACGCGCCGCTGGACTCCTGGGATATCTTCTTCAAGCCCGAATACATGCAGAAACTGAGCAAG
TGCGGGGTGGCGGTGCTGGACAACGGCCCCGAGCTGCTGCCCATCACCCTCAACTACCTCGGCCTGCCACAC
CACAGCCAGAAGGCCGACGACTACAAGCAGGCCCAGGCGGCGCTGCTGAAGGTGCGCCCGTACATCCGCTAC
TTCCACTCCTCGAAGTACGTCAGCGACCTGGCCAACGGCGAGATCTGCATGGTGGTCGGTTTCTCCGGCGAC
ATCCTGCAGGCCGCGACCCGCGCCAAGGAGGCCAACAACGGCGTGGAAGTGCGCTACTCGACGCCGAAGGAA
GGCTCGCCGCTGTGGTTCGACATGGTCTCGATGCCGGTCGACGCGCCCGACGAGAAGGCCGGCTACGCCTTC
ATGAACTACCTGCTGCGTCCCGAGGTGATGGCGGCGATCAGCAACCATGTGCACTACGCCAACGGCAACCTG
GCCGCCGACCCGCTGGTGGACGCCGAGATCAAGGCCGACCCGGCGATCTACCCGCCGCAGGAGAAGATGGCC
AAGCTGTTCGCCCTGGAATCCATGCCGCAGAAGATCGACCGCGTGCGCACGCGCACCTGGAACACGGTGAAG
ACCGGCAAGTGA