ViewGene
Locus Name:
GeneID:
Location:

GeneID:1720
TrivialName: PA14_29500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29500
PAO1 Ortholog Locus:PA2676
Sequence Length:1188
Protein Length:395
Start: 2558922
Stop: 2560109
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06064.1|AE004695_17 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 393/395 (99%), Positives = 393/395 (99%)
Sequence:
ATGAATTTCATCTACCAAGCCGTCGATCGCAAGGGCAGGCGCGTTCGTGGCGAACTCTGCCTCCCCACGCGC
CAGGATGCGCTGCGGCAGTTGCAGCGCCAGGGGCTCACCCCGCTCAGCCTGGAGGTGAAACGCCGCAACCTG
GGCTCGCGACGTCGGCTCAAGGCCGAGGAATTGAACATGGCCATCCACGAGCTGGCCACCATGCTCGCGGCG
GGAGTGAGCATGGCCGACGCGGTGGAGGCCCAGGAGCGAGGCGCGCGCCACCCGAAGTTGATTTCCGCCCTG
CAGGCGATGGCCAATGGTCTGCGCCAGGGGCAGTCCTTTCCCGTGGTGCTGGAGAGCGCCGGCCTCGACCTG
CCGCGCTATGTATATCAACTGGTGGCGGCCGGCGAGATGACCGGAAACCTCGCAGGAGCCCTGAGGGACTGT
GCCACGCAGATGGAATACGAACGGCGAACCCGCGCCGAGTTGCAAGGGGCGCTGATCTACCCTGCGATTCTG
GTGCTCAGCGGGGTGCTCGCCGTGGCGACCCTGTTCGTCTTCGTCGTTCCGAAATTCGCCAATCTCCTGAAC
GAGACCGCCCAGCTTCCGTGGCTTGCCTGGGCAGTGCTGAGCATCGGGGTATGGAGCAACGAGAGTTCCGGC
TTGCTGGCGTTCGCCGTCCTGCTGCTTGCTGGCGGCATTGCCGTGGCGCTGCGCAATCCGGCGCTCCGCGCC
CATGCGCTCGACCAGTTGGTGCGCCTGCCCGTAGTCGGGGAATGGTTGATGCAGGCGGAAATAGCGCAATGG
TCGAAGGTGCTTGGAACCCTGCTGGGAAATCGTGTGCCGCTGGTGGAGGCCCTGGCGCTTTCCGCCGCTGGC
GTCCGCATTGCCCGGCAGCGCCGGACCCTGGAGCGAGTCACCCAGGATGTGCGGGCCGGCATCGCCTTGTCG
GCAGCGTTGGAGGAGCGCCAGGCGGTCACGTCCATCGGTTCGAGCCTGGTGCGGGTTGGAGAGGCCTCCGGG
CAGCTCGCGGAGATGCTGCAGAGCCTGGCGACGCTCTATGGAGAGGCCGGGCAGGCGCGAATGAAAAAGGCC
CTGGTGCTGATCGAGCCTCTGGCGATCCTGCTGATCGGCTCTGTGTTCGGCCTGATCATTACCGGCGTGGTA
CTGGCGATTACCAGCGCCAACGACATGGTGCTTTGA
Translation:
MNFIYQAVDRKGRRVRGELCLPTRQDALRQLQRQGLTPLSLEVKRRNLGSRRRLKAEELNMAIHELATMLAA
GVSMADAVEAQERGARHPKLISALQAMANGLRQGQSFPVVLESAGLDLPRYVYQLVAAGEMTGNLAGALRDC
ATQMEYERRTRAELQGALIYPAILVLSGVLAVATLFVFVVPKFANLLNETAQLPWLAWAVLSIGVWSNESSG
LLAFAVLLLAGGIAVALRNPALRAHALDQLVRLPVVGEWLMQAEIAQWSKVLGTLLGNRVPLVEALALSAAG
VRIARQRRTLERVTQDVRAGIALSAALEERQAVTSIGSSLVRVGEASGQLAEMLQSLATLYGEAGQARMKKA
LVLIEPLAILLIGSVFGLIITGVVLAITSANDMVL*
AnnotationID:1729GeneID:1720
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 18:06:48
Gene Name:
Confidence Code:3
GeneProduct:putative type II secretion system protein
Cell Localization:()
Synonyms:hplS
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1459
Secondary Functional Category(ies):intracellular trafficking and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1459, PulF, Type II secretory pathway, component PulF 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 397 residues,  99.5% aligned
Score =  312 bits (802), Expect = 3e-86
Identities = 138/396 (34%), Positives = 227/396 (57%), Gaps = 1/396 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3443




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20590




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36347




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1720_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1720
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3023
                           PA2676_tr
                           translation of PA2676
                           395
                           99.49
                           99.49
                           0
                           1908.0
     

     
     
93802
                           gb|AAG06064.1|AE004695_17
                           (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           395
                           99.49
                           99.49
                           0
                           1908.0
     

     






      

          
GC ORFID: 44722How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2676Glimmer Score: 

          
Start: 2395004Stop: 2393817

          
Length: 1188


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2676 translation of PA2676Homolog Bit Score 739.0

          
Other Homologs:  t_PA2676 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATTTCATCTACCAAGCCGTCGATCGCAAGGGCAGGCGCGTTCGTGGCGAACTCTGCCTCCCCACGCGC 
CAGGATGCGCTGCGGCAGTTGCAGCGCCAGGGGCTCACCCCGCTCAGCCTGGAGGTGAAACGCCGCAACCTG 
GGCTCGCGACGTCGGCTCAAGGCCGAGGAATTGAACATGGCCATCCACGAGCTGGCCACCATGCTCGCGGCG 
GGAGTGAGCATGGCCGACGCGGTGGAGGCCCAGGAGCGAGGCGCGCGCCACCCGAAGTTGATTTCCGCCCTG 
CAGGCGATGGCCAATGGTCTGCGCCAGGGGCAGTCCTTTCCCGTGGTGCTGGAGAGCGCCGGCCTCGACCTG 
CCGCGCTATGTATATCAACTGGTGGCGGCCGGCGAGATGACCGGAAACCTCGCAGGAGCCCTGAGGGACTGT 
GCCACGCAGATGGAATACGAACGGCGAACCCGCGCCGAGTTGCAAGGGGCGCTGATCTACCCTGCGATTCTG 
GTGCTCAGCGGGGTGCTCGCCGTGGCGACCCTGTTCGTCTTCGTCGTTCCGAAATTCGCCAATCTCCTGAAC 
GAGACCGCCCAGCTTCCGTGGCTTGCCTGGGCAGTGCTGAGCATCGGGGTATGGAGCAACGAGAGTTCCGGC 
TTGCTGGCGTTCGCCGTCCTGCTGCTTGCTGGCGGCATTGCCGTGGCGCTGCGCAATCCGGCGCTCCGCGCC 
CATGCGCTCGACCAGTTGGTGCGCCTGCCCGTAGTCGGGGAATGGTTGATGCAGGCGGAAATAGCGCAATGG 
TCGAAGGTGCTTGGAACCCTGCTGGGAAATCGTGTGCCGCTGGTGGAGGCCCTGGCGCTTTCCGCCGCTGGC 
GTCCGCATTGCCCGGCAGCGCCGGACCCTGGAGCGAGTCACCCAGGATGTGCGGGCCGGCATCGCCTTGTCG 
GCAGCGTTGGAGGAGCGCCAGGCGGTCACGTCCATCGGTTCGAGCCTGGTGCGGGTTGGAGAGGCCTCCGGG 
CAGCTCGCGGAGATGCTGCAGAGCCTGGCGACGCTCTATGGAGAGGCCGGGCAGGCGCGAATGAAAAAGGCC 
CTGGTGCTGATCGAGCCTCTGGCGATCCTGCTGATCGGCTCTGTGTTCGGCCTGATCATTACCGGCGTGGTA 
CTGGCGATTACCAGCGCCAACGACATGGTGCTTTGA