ViewGene
Locus Name:
GeneID:
Location:

GeneID:172
TrivialName: PA14_46640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46640
PAO1 Ortholog Locus:PA1365
Sequence Length:2442
Protein Length:813
Start: 4158230
Stop: 4155789
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04754.1|AE004565_13 (AE004565) probable siderophore receptor [Pseudomonas aeruginosa PAO1]
Identities = 813/813 (100%), Positives = 813/813 (100%)
Sequence:
GTGCATTTTTCCCTCCGCAGTCGCCACCTGCGTCCTTCATTGCTCGCCAGCAGCCTGCTCCTGGCGGTGTCG
GCCCAGGGCCAGGAAAAGCTCGACGTGGATCTGCCCGCCGCGCCGCTCGGCCAGGCGATCAACGCCCTCGCG
CAACAATCCTCGGTACAGATCCTTTTCGCCGGCGATCTCGGCGCCGGCCGCCAGGCGCCCGCGCTGAAGGGG
CGTTTCACCCCCGAAGAGGCATTGCGCCAGTTGCTCAGGGACAGCGGCCTGAAGGCGCAGGCCAGGGACGAA
CATACCTTCATCGTCGTTCCGGCCAGCGAAGCCGCCGTGCCCGCTACGCAAGCCCGCAGCGAACCGCTGGAC
ATGGAGCAGATGGAAATCACCGCCTCGCGCACCAGCAGCGACCTGGTCTCCGCCACGCGCCAGTCCACCGTC
ATCGAGCATGCCCAGCTGGAGGAGCTGCGCCAGGGCTCCGACAGCCTGGCCACCGTGCTGGCCAAGGCGGTG
CCGGGGATGTCCGATTCCAGCCGCACCATCACCGAATACGGCCAGACCCTGCGCGGGCGCAGCATGCTGGTG
ATGGTCGATGGCGTGCCGCTGAACACCAATCGCGACTCCTCGCGCAACCTGGCCAACATTGACCCGGCACTG
ATCGAGCGGATCGAGGTGATCCGTGGCAGCAGCGCCATCTACGGCAGCGGCGCCACCGGCGGGATCATCTCC
ATCACCACGCGTCCGGCCGGCGGCGAGAACCGCGCGGAAACCCGCCTCAGCGCCACCTCGCCGCTGACCCGG
CTGGGCAGCGATGGCCTCGGCGGCCAGTTCCAGCAATACTTCGCCGGCTCCCTGGGGGCGCTCGACTATTCG
TTCGACTTCGGCACCCGCCACGTCGGCGCTTCCTACGACGCCCATGGCGACCGCATCGCCCCGGAACCCAGC
CAGGGCGACCTGTTCGACTCGAACGTCTACAACATCGGCGGCAAGCTCGGCCTGCGCATCGACGAGAACCAG
CGCGTGCAGCTCGCCCTCAGCCACTACGACGCCCGCCAGGACACCGACTACGCCACCGACCCGAGGGTCGCC
AGGCTGCCGCCGGGCTCGGTCCCGGCCAACGCGATCAAGGGCCTGGAGCTGGACGAGCAGAACCGCATCCGC
AACACCCTGGCGAACCTCGAGTACGAGAACCTCGACATCCTCGGCAGCCGGCTCTCCGCGCAGCTCTACTAC
CGCGACTACTTCACCCGCTTCACCCCGTTCGACGCCCGCGCCGTCTCCACCCGCGGCGGCAACGTCGACCAG
ATCATGCAGAACAGCGAAGTGTTCGGCAGCCGCCTGACCCTGCGCACGCCGCTGGGCGAAAGCGGCAATACC
GAACTGGTCTGGGGCGGCGACTACAACCAGGAACGCAGCGACATGCCGCTCGACGTGTTCGACCCGGCGGCC
TACGACGCCAGCGGCGGGCTGGTCTTCGACAAGATCGGCAAGCTCACCTACATGCCGCCGCTACGCACCCGC
AGCGCCGGCGCGTTCGCCCAGTTGCAGCATCGCTTCGACGAACACTGGTCGATCGACGGCGGCCTGCGCTAC
GAATACTCCACCGCCGAATTCGACGACTTCATCCCGCTCTCCGAGTCCAAGGCCGCCTCGCCGGTGACCGTC
AAGGGCGGCGACCTCGACTACGACGCGGTGCTGTCGAACCTCGGCATCGTCTATTCGCCGGTGGCTGGCCAG
GAAATCTATGCCTCCTTCAGCCAGGGCTTCCAGCTGCCCGACGTCGGCATCCAGCTGCGCAACGCCCGCCGT
GGCTTCGATATCGGCTCCTCGAACCTCGAACCGGTGAAGACCAACAACTACGAACTCGGCTGGCGCGGCGCC
ATCGGCGGCAACACCCTGGGCAGCCTGGCGCTGTTCTACACCACCTCCAAGCTGGGCGACGTGCAGAGCTTC
AACAACGGCCTGATCCTCACCCGCACCAAGGAGCGCATCTACGGCGTCGAGGCCAGCGCCGACTGGCTCAGC
GACGACGAAGTCTGGGGCGCGGGCGGCAGCGCCACCTGGATGCGCGGACGCGAGAAGCCGGACGGCAAGGAC
TGGCAGGACATGACCGGCTACCGCGTGCCGCCGCTGAAGCTGACCGCCTACCTGCAATACAAGCCGGATGCC
GACTGGAACAACCGCCTGCAGGCCACCTTCTTCGACTCCAAGGACTACCGTCTCGACGGCGTGGAAAGCTTC
GGCCGGCGCCAGGTCAGCACCTACACCACGGTCGACCTGGTCAGCCAGTACCGCATCACCCCCGACGACCAG
TTGAGCCTGGGCATCCAGAACCTGTTCAACCGCGACTACTACCCGCTCTACAGCCAGTTGCTGCGCAACAAC
AACAACACCAGCCACCTGCCGGCGCCGGGCACGGTGCTGACGGCGAGCTATACGCACAACTGGTGA
Translation:
MHFSLRSRHLRPSLLASSLLLAVSAQGQEKLDVDLPAAPLGQAINALAQQSSVQILFAGDLGAGRQAPALKG
RFTPEEALRQLLRDSGLKAQARDEHTFIVVPASEAAVPATQARSEPLDMEQMEITASRTSSDLVSATRQSTV
IEHAQLEELRQGSDSLATVLAKAVPGMSDSSRTITEYGQTLRGRSMLVMVDGVPLNTNRDSSRNLANIDPAL
IERIEVIRGSSAIYGSGATGGIISITTRPAGGENRAETRLSATSPLTRLGSDGLGGQFQQYFAGSLGALDYS
FDFGTRHVGASYDAHGDRIAPEPSQGDLFDSNVYNIGGKLGLRIDENQRVQLALSHYDARQDTDYATDPRVA
RLPPGSVPANAIKGLELDEQNRIRNTLANLEYENLDILGSRLSAQLYYRDYFTRFTPFDARAVSTRGGNVDQ
IMQNSEVFGSRLTLRTPLGESGNTELVWGGDYNQERSDMPLDVFDPAAYDASGGLVFDKIGKLTYMPPLRTR
SAGAFAQLQHRFDEHWSIDGGLRYEYSTAEFDDFIPLSESKAASPVTVKGGDLDYDAVLSNLGIVYSPVAGQ
EIYASFSQGFQLPDVGIQLRNARRGFDIGSSNLEPVKTNNYELGWRGAIGGNTLGSLALFYTTSKLGDVQSF
NNGLILTRTKERIYGVEASADWLSDDEVWGAGGSATWMRGREKPDGKDWQDMTGYRVPPLKLTAYLQYKPDA
DWNNRLQATFFDSKDYRLDGVESFGRRQVSTYTTVDLVSQYRITPDDQLSLGIQNLFNRDYYPLYSQLLRNN
NNTSHLPAPGTVLTASYTHNW*
AnnotationID:182GeneID:172
AnnotatorUID: danlee
Modification Date/Time: 2005-09-28 12:12:20
Gene Name:
Confidence Code:3
GeneProduct: probable siderophore receptor
Cell Localization:(6) Outer membrane protein
Synonyms:PA1365
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to PA01 PA1365.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:14073




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17489




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:172
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
307
                           PA1365_tr
                           translation of PA1365
                           813
                           99.99
                           99.99
                           0
                           4184.0
     

     
     
19420
                           gb|AAG04754.1|AE004565_13
                           (AE004565) probable siderophore receptor [Pseudomonas aeruginosa PAO1]
                           813
                           99.87
                           99.99
                           0
                           4181.0
     

     
     
19421
                           emb|CAD17567.1|
                           (AL646078) PROBABLE FERRIC SIDEROPHORE RECEPTOR OUTER MEMBRANE SIGNAL PEPTIDE PROTEIN [Ralstonia solanacearum]
                           827
                           61.42
                           75.93
                           29
                           2652.0
     

     
     
19422
                           emb|CAA66129.1|
                           (X97499) ferric alcaligin E [Ralstonia metallidurans]
                           868
                           51.95
                           66.70
                           83
                           2213.0
     

     
     
19423
                           dbj|BAB72355.1|
                           (AP003582) ORF_ID:alr0397~similar to ferric aerobactin receptor [Nostoc sp. PCC 7120]
                           906
                           34.76
                           51.21
                           132
                           1360.0
     

     






      

          
GC ORFID: 43174How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1365Glimmer Score: 

          
Start: 795679Stop: 798120

          
Length: 2442


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1365 translation of PA1365Homolog Bit Score 1616.0

          
Other Homologs:  t_PA1365 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCATTTTTCCCTCCGCAGTCGCCACCTGCGTCCTTCATTGCTCGCCAGCAGCCTGCTCCTGGCGGTGTCG 
GCCCAGGGCCAGGAAAAGCTCGACGTGGATCTGCCCGCCGCGCCGCTCGGCCAGGCGATCAACGCCCTCGCG 
CAACAATCCTCGGTACAGATCCTTTTCGCCGGCGATCTCGGCGCCGGCCGCCAGGCGCCCGCGCTGAAGGGG 
CGTTTCACCCCCGAAGAGGCATTGCGCCAGTTGCTCAGGGACAGCGGCCTGAAGGCGCAGGCCAGGGACGAA 
CATACCTTCATCGTCGTTCCGGCCAGCGAAGCCGCCGTGCCCGCTACGCAAGCCCGCAGCGAACCGCTGGAC 
ATGGAGCAGATGGAAATCACCGCCTCGCGCACCAGCAGCGACCTGGTCTCCGCCACGCGCCAGTCCACCGTC 
ATCGAGCATGCCCAGCTGGAGGAGCTGCGCCAGGGCTCCGACAGCCTGGCCACCGTGCTGGCCAAGGCGGTG 
CCGGGGATGTCCGATTCCAGCCGCACCATCACCGAATACGGCCAGACCCTGCGCGGGCGCAGCATGCTGGTG 
ATGGTCGATGGCGTGCCGCTGAACACCAATCGCGACTCCTCGCGCAACCTGGCCAACATTGACCCGGCACTG 
ATCGAGCGGATCGAGGTGATCCGTGGCAGCAGCGCCATCTACGGCAGCGGCGCCACCGGCGGGATCATCTCC 
ATCACCACGCGTCCGGCCGGCGGCGAGAACCGCGCGGAAACCCGCCTCAGCGCCACCTCGCCGCTGACCCGG 
CTGGGCAGCGATGGCCTCGGCGGCCAGTTCCAGCAATACTTCGCCGGCTCCCTGGGGGCGCTCGACTATTCG 
TTCGACTTCGGCACCCGCCACGTCGGCGCTTCCTACGACGCCCATGGCGACCGCATCGCCCCGGAACCCAGC 
CAGGGCGACCTGTTCGACTCGAACGTCTACAACATCGGCGGCAAGCTCGGCCTGCGCATCGACGAGAACCAG 
CGCGTGCAGCTCGCCCTCAGCCACTACGACGCCCGCCAGGACACCGACTACGCCACCGACCCGAGGGTCGCC 
AGGCTGCCGCCGGGCTCGGTCCCGGCCAACGCGATCAAGGGCCTGGAGCTGGACGAGCAGAACCGCATCCGC 
AACACCCTGGCGAACCTCGAGTACGAGAACCTCGACATCCTCGGCAGCCGGCTCTCCGCGCAGCTCTACTAC 
CGCGACTACTTCACCCGCTTCACCCCGTTCGACGCCCGCGCCGTCTCCACCCGCGGCGGCAACGTCGACCAG 
ATCATGCAGAACAGCGAAGTGTTCGGCAGCCGCCTGACCCTGCGCACGCCGCTGGGCGAAAGCGGCAATACC 
GAACTGGTCTGGGGCGGCGACTACAACCAGGAACGCAGCGACATGCCGCTCGACGTGTTCGACCCGGCGGCC 
TACGACGCCAGCGGCGGGCTGGTCTTCGACAAGATCGGCAAGCTCACCTACATGCCGCCGCTACGCACCCGC 
AGCGCCGGCGCGTTCGCCCAGTTGCAGCATCGCTTCGACGAACACTGGTCGATCGACGGCGGCCTGCGCTAC 
GAATACTCCACCGCCGAATTCGACGACTTCATCCCGCTCTCCGAGTCCAAGGCCGCCTCGCCGGTGACCGTC 
AAGGGCGGCGACCTCGACTACGACGCGGTGCTGTCGAACCTCGGCATCGTCTATTCGCCGGTGGCTGGCCAG 
GAAATCTATGCCTCCTTCAGCCAGGGCTTCCAGCTGCCCGACGTCGGCATCCAGCTGCGCAACGCCCGCCGT 
GGCTTCGATATCGGCTCCTCGAACCTCGAACCGGTGAAGACCAACAACTACGAACTCGGCTGGCGCGGCGCC 
ATCGGCGGCAACACCCTGGGCAGCCTGGCGCTGTTCTACACCACCTCCAAGCTGGGCGACGTGCAGAGCTTC 
AACAACGGCCTGATCCTCACCCGCACCAAGGAGCGCATCTACGGCGTCGAGGCCAGCGCCGACTGGCTCAGC 
GACGACGAAGTCTGGGGCGCGGGCGGCAGCGCCACCTGGATGCGCGGACGCGAGAAGCCGGACGGCAAGGAC 
TGGCAGGACATGACCGGCTACCGCGTGCCGCCGCTGAAGCTGACCGCCTACCTGCAATACAAGCCGGATGCC 
GACTGGAACAACCGCCTGCAGGCCACCTTCTTCGACTCCAAGGACTACCGTCTCGACGGCGTGGAAAGCTTC 
GGCCGGCGCCAGGTCAGCACCTACACCACGGTCGACCTGGTCAGCCAGTACCGCATCACCCCCGACGACCAG 
TTGAGCCTGGGCATCCAGAACCTGTTCAACCGCGACTACTACCCGCTCTACAGCCAGTTGCTGCGCAACAAC 
AACAACACCAGCCACCTGCCGGCGCCGGGCACGGTGCTGACGGCGAGCTATACGCACAACTGGTGA