ViewGene

Locus Name:
GeneID:
Location:

GeneID:1719
TrivialName: PA14_35640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_35640
PAO1 Ortholog Locus:PA2239
Sequence Length:1104
Protein Length:367
Start: 3168846
Stop: 3167743
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05627.1|AE004649_18 (AE004649) probable transferase [Pseudomonas aeruginosa PAO1]
Identities = 366/367 (99%), Positives = 366/367 (99%)
Sequence:
ATGCGCATAGGACTCGACTACCGCACCGTCGGCAGCTCGCCGCACTCGGGCATCAGCCGCCAGGTCTATGCC
ATGGAGCAGGCCCTGGAAAGCCTGCCCGGCACGCAGGTGACCCGCTTCACCGTGGCCCCTCTCGACGACCCG
CTGCGCCAGCGGGCGGTCTGCCCGCCGTGGGGCTGCCCGCGCACCGCGATGCACCAGCCGCACCAGCGCCTG
CGCTTCGAAGCCGGGTTCCTCCCACGCGCCTTGCGCGAGCAGGACATCGACCTGTACATCAGCACCTTCAAC
ATGGGCCTGCCGCTACCGCCGCGTCCGCCGGGCGTGCGCTATGCGCTGCTGATCCACGACCTGTTCCAGATC
ACCCTGAAGAACTACCACGCCAACCGCCTGAAGGCGCTGGTCTATCGAGTCAGCGACTACCTGTCGATCGCC
TATGCGCTGCGTGTCGCCGACCGTGTCTGGACCCCTTCGCAGTACAGCGCCGACGAGGCTGTGCGGCTGTTT
CCCGGGGTCGCCGGGAAAGTCCGGGTGCTGCCCAACCAGGTCGACGGCTTCGCCGGCGAACCCGCCGACCTC
TCGGCACGCGGCCTGCCGCCACGCTACTGGCTGCTGGTGGGTACCCGCGAACTGCGCAAGAACGTGCCCTGG
TTCGTCAGCGCCTGGGCCCGGGCGCGCGCCCAGGCGCCCGGCGTGCCGCCGCTGGTGCTGGTCGGCAGCCTC
GACCACCTGCCCGAGGAACAACGCGGCTTGCCCGGCCTGCACGCGCTCGGCGGGCTCGACGACGCCGAACTG
CACGCGCTGTACCGCCAGGCCGAGCGGCTCTGGCAACCGTCCTACGCGGAAGGCTTCGGCCTGCCGGTGGTC
GAGGCGCTGAGCGTCGGCACGCCGGTGGCGGTGGCCAGCGGCACCTCGCTGGACGAAGTCACCCCGCCGTCG
GCGCCGCGCTTCTCGCCCAGCGACGGCGCCGCCCTGGAACGCCTGATGCTGCGCCTGGCCGATGCGCCGCGC
GAGGCCTCGGCGGAAGAACTCATCGCCTGGGCTGCACGCTTCAACCGCGAAGCCTACCGGCAACGGCTGGCC
GCACTGATCGAGGAACTGAGTTGA
Translation:
MRIGLDYRTVGSSPHSGISRQVYAMEQALESLPGTQVTRFTVAPLDDPLRQRAVCPPWGCPRTAMHQPHQRL
RFEAGFLPRALREQDIDLYISTFNMGLPLPPRPPGVRYALLIHDLFQITLKNYHANRLKALVYRVSDYLSIA
YALRVADRVWTPSQYSADEAVRLFPGVAGKVRVLPNQVDGFAGEPADLSARGLPPRYWLLVGTRELRKNVPW
FVSAWARARAQAPGVPPLVLVGSLDHLPEEQRGLPGLHALGGLDDAELHALYRQAERLWQPSYAEGFGLPVV
EALSVGTPVAVASGTSLDEVTPPSAPRFSPSDGAALERLMLRLADAPREASAEELIAWAARFNREAYRQRLA
ALIEELS*
AnnotationID:1728GeneID:1719
AnnotatorUID: danlee
Modification Date/Time: 2005-10-10 15:03:37
Gene Name:pslI
Confidence Code:3
GeneProduct:putative glycosyltransferase
Cell Localization:()
Synonyms:PA2239
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):Cell wall / LPS / capsule
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|68345865|gb|AAY93471.1|  glycosyl transferase, group 1 family protein [Pseudomonas fluorescens Pf-5]
     Length=366
     Score =  445 bits (1144),  Expect = 1e-123
     Identities = 221/366 (60%), Positives = 269/366 (73%), Gaps = 1/366 (0%)

gi|71556546|gb|AAZ35757.1|  glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. phaseolicola 1448A]
     Length=366
     Score =  408 bits (1048),  Expect = 2e-112
     Identities = 207/368 (56%), Positives = 256/368 (69%), Gaps = 5/368 (1%)

gi|28853945|gb|AAO57011.1|  glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=366
     Score =  406 bits (1044),  Expect = 5e-112
     Identities = 206/368 (55%), Positives = 257/368 (69%), Gaps = 5/368 (1%)
Structural Features:
COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer membrane].
             CD-Length = 381 residues,  99.0% aligned
             Score = 93.5 bits (230), Expect = 4e-20
Genomic Context:
Comment:
ReferenceID:3441
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20588
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32534
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1719_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1719

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3022 PA2239_tr translation of PA2239 367 99.72 99.72 0 1907.0
93800 gb|AAG05627.1|AE004649_18 (AE004649) probable transferase [Pseudomonas aeruginosa PAO1] 367 99.72 99.72 0 1907.0
93801 gb|AAO57011.1| (AE016868) glycosyl transferase, group 1 family protein [Pseudomonas syringae pv. tomato str. DC3000] 369 55.82 69.64 5 1048.0
GC ORFID: 44721How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2239Glimmer Score:
Start: 1785070Stop: 1786173
Length: 1104
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2239 translation of PA2239Homolog Bit Score 739.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6841 (ORF: BLASTX 400.0), t_PA2239 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCATAGGACTCGACTACCGCACCGTCGGCAGCTCGCCGCACTCGGGCATCAGCCGCCAGGTCTATGCC
ATGGAGCAGGCCCTGGAAAGCCTGCCCGGCACGCAGGTGACCCGCTTCACCGTGGCCCCTCTCGACGACCCG
CTGCGCCAGCGGGCGGTCTGCCCGCCGTGGGGCTGCCCGCGCACCGCGATGCACCAGCCGCACCAGCGCCTG
CGCTTCGAAGCCGGGTTCCTCCCACGCGCCTTGCGCGAGCAGGACATCGACCTGTACATCAGCACCTTCAAC
ATGGGCCTGCCGCTACCGCCGCGTCCGCCGGGCGTGCGCTATGCGCTGCTGATCCACGACCTGTTCCAGATC
ACCCTGAAGAACTACCACGCCAACCGCCTGAAGGCGCTGGTCTATCGAGTCAGCGACTACCTGTCGATCGCC
TATGCGCTGCGTGTCGCCGACCGTGTCTGGACCCCTTCGCAGTACAGCGCCGACGAGGCTGTGCGGCTGTTT
CCCGGGGTCGCCGGGAAAGTCCGGGTGCTGCCCAACCAGGTCGACGGCTTCGCCGGCGAACCCGCCGACCTC
TCGGCACGCGGCCTGCCGCCACGCTACTGGCTGCTGGTGGGTACCCGCGAACTGCGCAAGAACGTGCCCTGG
TTCGTCAGCGCCTGGGCCCGGGCGCGCGCCCAGGCGCCCGGCGTGCCGCCGCTGGTGCTGGTCGGCAGCCTC
GACCACCTGCCCGAGGAACAACGCGGCTTGCCCGGCCTGCACGCGCTCGGCGGGCTCGACGACGCCGAACTG
CACGCGCTGTACCGCCAGGCCGAGCGGCTCTGGCAACCGTCCTACGCGGAAGGCTTCGGCCTGCCGGTGGTC
GAGGCGCTGAGCGTCGGCACGCCGGTGGCGGTGGCCAGCGGCACCTCGCTGGACGAAGTCACCCCGCCGTCG
GCGCCGCGCTTCTCGCCCAGCGACGGCGCCGCCCTGGAACGCCTGATGCTGCGCCTGGCCGATGCGCCGCGC
GAGGCCTCGGCGGAAGAACTCATCGCCTGGGCTGCACGCTTCAACCGCGAAGCCTACCGGCAACGGCTGGCC
GCACTGATCGAGGAACTGAGTTGA