ViewGene
Locus Name:
GeneID:
Location:

GeneID:1718
TrivialName: PA14_68500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68500
PAO1 Ortholog Locus:PA5186
Sequence Length:1164
Protein Length:387
Start: 6111291
Stop: 6110128
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08571.1|AE004931_8 (AE004931) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 384/387 (99%), Positives = 385/387 (99%)
Sequence:
ATGCAAGCTTTCAGTTTCGCCACTACCGCGCAGTTCCTCTGCGAGGCCGGCTCCGCCATCCGCCTGGCGGAA
CTCTGCCGCGAGCGAAGGGCGCGCCGCGTGTTGATCGTGACCGACCCGGGGATCACCCGGCTCGGCTTGCTG
GATGCGATCCTGCCCGGCTTCCCGCGCCTGGGCCTGGCCGTCGAGGTGTACGACCAGGTGCTCGCCGATCCG
CCTGAATCGGTGGTCGAGGCCGCGCTCGGGCGGGCGCGGGGCATGGCTGCCGAGCTGGTGGTCGGTTTCGGC
GGTGGCAGTTCCATGGACGTGGCCAAACTGGTCGCGCTGCTCGCCCATCCAGAGGCAGGGCAGGGGCTCGGC
GAGGTCTTCGGGGTCGGCAACGCACGCGGGCCGCGCCTGCCGCTGATCCAGGTGCCGACCACCGCCGGGACC
GGCTCCGAGGTGACGCCGATCGCCATCGTCACCACTGGCGAGACCACCAAGATGGGTGTGGTCTCGCCCTAC
CTGCTGCCCGATCTGGCGCTGCTCGATGCCGACCTGACCCTCGGGCTGCCGCCGGCGGTCACCGCGGCGACC
GGTATCGACGCGATGGTGCATGCGATCGAGAGCTATACCAGCAAGCTGAAGAAGAACCCGCTGTCCGACCTG
CTGGCGCGGGAGGCGTTGCGCCTGCTGGCGGCCAACCTGGAACGCGCGGTAGGCGACGGCGGCGACCGCGAG
GCGCGCCAGGCCATGCTGCTGGGCGCCTGCCTGGCCGGGCAGGCCTTCGCCAATGCGCCGGTGGCGGCGGTG
CATGCCCTGGCCTATCCGCTGGGAGGGCATTTCCACATTCCCCACGGCCTGAGCAATGCGCTGGTGCTACCG
GAGGTGATTCGTTTCAACGCTCCCGCTGCCGCTGGACTCTATGCCGAGCTGGCGCCGCTGCTGCTGGGCGAC
CGCTTGCGTCCGGGCGATCGCGACGCGCTTACCGCGCAGCTGATCGACGAACTGGCCCAGCTCAGTCCGCGC
AACGGCCTGCCGAGCCGCTTGCGCGACGCCGGGGTGGACGAGGCGATGCTGCCGCGCCTGGCCGCCGACGCG
ATGCTCCAGCAGCGTCTGCTGGTCAACAACCCGCGCGAGGTCGGCGAGGCGGACGCCCTGGCGATCTATCGC
GCGGCATACTGA
Translation:
MQAFSFATTAQFLCEAGSAIRLAELCRERRARRVLIVTDPGITRLGLLDAILPGFPRLGLAVEVYDQVLADP
PESVVEAALGRARGMAAELVVGFGGGSSMDVAKLVALLAHPEAGQGLGEVFGVGNARGPRLPLIQVPTTAGT
GSEVTPIAIVTTGETTKMGVVSPYLLPDLALLDADLTLGLPPAVTAATGIDAMVHAIESYTSKLKKNPLSDL
LAREALRLLAANLERAVGDGGDREARQAMLLGACLAGQAFANAPVAAVHALAYPLGGHFHIPHGLSNALVLP
EVIRFNAPAAAGLYAELAPLLLGDRLRPGDRDALTAQLIDELAQLSPRNGLPSRLRDAGVDEAMLPRLAADA
MLQQRLLVNNPREVGEADALAIYRAAY*
AnnotationID:1727GeneID:1718
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 17:05:06
Gene Name:
Confidence Code:3
GeneProduct:putative alcohol dehydrogenase, iron-containing
Cell Localization:()
Synonyms:attL
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1454,pfam00465
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67663.1|AE016396_5 (AE016781) alcohol dehydrogenase, iron-containing [Pseudomonas
           putida KT2440]
          Length = 387

 Score =  531 bits (1369), Expect = e-150
 Identities = 280/387 (72%), Positives = 317/387 (81%)

>gb|AAL13074.2| (AY052389) AttL [Agrobacterium tumefaciens]
          Length = 399

 Score =  414 bits (1064), Expect = e-115
 Identities = 226/387 (58%), Positives = 276/387 (71%), Gaps = 9/387 (2%)

>gb|AAL45828.1| (AE008938) alcohol dehydrogenase [Agrobacterium tumefaciens str.
           C58 (U. Washington)]
          Length = 386

 Score =  414 bits (1064), Expect = e-115
 Identities = 226/387 (58%), Positives = 276/387 (71%), Gaps = 9/387 (2%)






 
Structural Features:
COG1454, EutG, Alcohol dehydrogenase, class IV 
[Energy production and conversion]
CD-Length = 377 residues,  99.2% aligned
Score =  380 bits (978), Expect = 1e-106
Identities = 181/383 (47%), Positives = 231/383 (60%), Gaps = 10/383 (2%)

pfam00465, Fe-ADH, Iron-containing alcohol dehydrogenase.
CD-Length = 365 residues,  98.6% aligned
Score =  274 bits (703), Expect = 1e-74
Identities = 140/368 (38%), Positives = 209/368 (56%), Gaps = 10/368 (2%)








   
Genomic Context:






   
Comment:


















    ReferenceID:3439




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20586




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34891




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1718_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1718
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3021
                           PA5186_tr
                           translation of PA5186
                           387
                           99.22
                           99.48
                           0
                           1911.0
     

     
     
93783
                           gb|AAG08571.1|AE004931_8
                           (AE004931) probable iron-containing alcohol dehydrogenase [Pseudomonas aeruginosa PAO1]
                           387
                           99.22
                           99.48
                           0
                           1911.0
     

     
     
93784
                           gb|AAN67663.1|AE016396_5
                           (AE016781) alcohol dehydrogenase, iron-containing [Pseudomonas putida KT2440]
                           387
                           72.35
                           81.91
                           0
                           1369.0
     

     
     
93786
                           gb|AAL45828.1|
                           (AE008938) alcohol dehydrogenase [Agrobacterium tumefaciens str. C58 (U. Washington)]
                           392
                           57.90
                           70.91
                           11
                           1075.0
     

     
     
93788
                           gb|AAD43989.1|U59485_16
                           (U59485) AttL [Agrobacterium tumefaciens]
                           392
                           57.90
                           70.91
                           11
                           1075.0
     

     






      

          
GC ORFID: 44720How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5186Glimmer Score: 

          
Start: 5374977Stop: 5373814

          
Length: 1164


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5186 translation of PA5186Homolog Bit Score 740.0

          
Other Homologs:  t_PA5186 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCTTTCAGTTTCGCCACTACCGCGCAGTTCCTCTGCGAGGCCGGCTCCGCCATCCGCCTGGCGGAA 
CTCTGCCGCGAGCGAAGGGCGCGCCGCGTGTTGATCGTGACCGACCCGGGGATCACCCGGCTCGGCTTGCTG 
GATGCGATCCTGCCCGGCTTCCCGCGCCTGGGCCTGGCCGTCGAGGTGTACGACCAGGTGCTCGCCGATCCG 
CCTGAATCGGTGGTCGAGGCCGCGCTCGGGCGGGCGCGGGGCATGGCTGCCGAGCTGGTGGTCGGTTTCGGC 
GGTGGCAGTTCCATGGACGTGGCCAAACTGGTCGCGCTGCTCGCCCATCCAGAGGCAGGGCAGGGGCTCGGC 
GAGGTCTTCGGGGTCGGCAACGCACGCGGGCCGCGCCTGCCGCTGATCCAGGTGCCGACCACCGCCGGGACC 
GGCTCCGAGGTGACGCCGATCGCCATCGTCACCACTGGCGAGACCACCAAGATGGGTGTGGTCTCGCCCTAC 
CTGCTGCCCGATCTGGCGCTGCTCGATGCCGACCTGACCCTCGGGCTGCCGCCGGCGGTCACCGCGGCGACC 
GGTATCGACGCGATGGTGCATGCGATCGAGAGCTATACCAGCAAGCTGAAGAAGAACCCGCTGTCCGACCTG 
CTGGCGCGGGAGGCGTTGCGCCTGCTGGCGGCCAACCTGGAACGCGCGGTAGGCGACGGCGGCGACCGCGAG 
GCGCGCCAGGCCATGCTGCTGGGCGCCTGCCTGGCCGGGCAGGCCTTCGCCAATGCGCCGGTGGCGGCGGTG 
CATGCCCTGGCCTATCCGCTGGGAGGGCATTTCCACATTCCCCACGGCCTGAGCAATGCGCTGGTGCTACCG 
GAGGTGATTCGTTTCAACGCTCCCGCTGCCGCTGGACTCTATGCCGAGCTGGCGCCGCTGCTGCTGGGCGAC 
CGCTTGCGTCCGGGCGATCGCGACGCGCTTACCGCGCAGCTGATCGACGAACTGGCCCAGCTCAGTCCGCGC 
AACGGCCTGCCGAGCCGCTTGCGCGACGCCGGGGTGGACGAGGCGATGCTGCCGCGCCTGGCCGCCGACGCG 
ATGCTCCAGCAGCGTCTGCTGGTCAACAACCCGCGCGAGGTCGGCGAGGCGGACGCCCTGGCGATCTATCGC 
GCGGCATACTGA