ViewGene
Locus Name:
GeneID:
Location:

GeneID:1717
TrivialName: PA14_64900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64900
PAO1 Ortholog Locus:PA4913
Sequence Length:1125
Protein Length:374
Start: 5784480
Stop: 5783356
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08298.1|AE004904_6 (AE004904) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 371/374 (99%), Positives = 373/374 (99%)
Sequence:
ATGTCCAAGAAGCTGTTCAGAAAAGGCATCCTGGCTCTCGCGGTTTCGTCCGTGATGGGTCTTTCCACGCAT
GCGCTGGCCGACGTCGTGATCGGCGTGGCCGGACCGCATACCGGCGCCAACGCCTCCTTCGGCGAGCAATAC
TGGCGCGGCGCGTCCCAGGCGGCGGAAGACATCAACGCGGCGGGTGGGATCAACGGCGAGAAGATCAAGCTG
GTCAAGGCCGACGACGCCTGCGAACCGAAGCAGGCCGTGGCCGTGGCCAACCGCCTGGTGGACCAGGACAAG
GCCATCGCCGTGGTCGGCCATTTCTGCTCTTCTTCGACCATCCCCGCATCCGAGGTCTACGACGAGGCCGGG
ATCATCGCCATCACCCCCGGTTCCACCAACCCGCAGGTCACCGAGCGCGGACTCTCCGGGATGTTTCGCATG
TGCGGCCGCGACGACCAGCAGGGCGTGGTCGCCGGCGACTATATCGTCAAGGTGCTGAAGGCCAAGAAGGTC
GCGGTGATCCACGACAAGGACACCTATGGCCAGGGCCTGGCGGACGCCACCAGGGCGCAACTGAACAAGCTC
GGCGTGAAAGAGGTTCTCTACGAGGGCCTGACCCGCGGCGAGAAGGACTTCAACGCGCTGGTTACCAAGATC
CGCGCCTCCGGTGCCGAGGTCGTCTACTTCGGCGGCCTGCATCCGGAAGCCGGTCCGCTGGTACGGCAGATG
CGTGAACAGGGACTGACCGCCAAGTTCATGTCCGACGACGGCGTGGTCACCGACGAACTGGCGACCACCGCC
GGCGGTCCGCAGTACGTCAAGGGCGTGCTGATGACCTTCGGCGCCGACCCGCGGCTGATCCCCGACGGCAAG
GCGGTGGTGGAGAAGTTCCGTGCCGGCGGTTTCGAGCCGGAAGGCTACACCCTCTACTCCTACGCCTCGATC
CAGTCCCTGGCGGCGGCCTTCAACGGCGCCGGCGCCAACGATCCGGCCAAGGCCGCCGAGTGGCTGAAGTCG
AATCCGGTGCAGACCGTGATGGGCAAGAAGGAATGGGACAAGAAGGGCGACCTGAAAGTCTCCGACTACGTG
GTCTACGAGTGGGACGACAAGGGCAAGTACCACCAGTTGCCCTGA
Translation:
MSKKLFRKGILALAVSSVMGLSTHALADVVIGVAGPHTGANASFGEQYWRGASQAAEDINAAGGINGEKIKL
VKADDACEPKQAVAVANRLVDQDKAIAVVGHFCSSSTIPASEVYDEAGIIAITPGSTNPQVTERGLSGMFRM
CGRDDQQGVVAGDYIVKVLKAKKVAVIHDKDTYGQGLADATRAQLNKLGVKEVLYEGLTRGEKDFNALVTKI
RASGAEVVYFGGLHPEAGPLVRQMREQGLTAKFMSDDGVVTDELATTAGGPQYVKGVLMTFGADPRLIPDGK
AVVEKFRAGGFEPEGYTLYSYASIQSLAAAFNGAGANDPAKAAEWLKSNPVQTVMGKKEWDKKGDLKVSDYV
VYEWDDKGKYHQLP*
AnnotationID:1726GeneID:1717
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 15:03:47
Gene Name:
Confidence Code:3
GeneProduct:putative binding protein component of ABC transporter
Cell Localization:()
Synonyms:PA4913
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative branched-chain amino acid ABC transporter, periplasmic component
Functional Category Confidence Code:5
COGs:COG0683
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70436.1|AE016685_1 (AE016792) branched-chain amino acid ABC transporter, periplasmic
           amino acid-binding protein [Pseudomonas putida KT2440]
          Length = 378

 Score =  601 bits (1549), Expect = e-171
 Identities = 295/374 (78%), Positives = 332/374 (88%), Gaps = 1/374 (0%)

>gb|AAO58347.1| (AE016873) high affinity branched-chain amino acid ABC transporter,
           periplasmic amino acid-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 380

 Score =  577 bits (1487), Expect = e-164
 Identities = 285/376 (75%), Positives = 326/376 (86%), Gaps = 3/376 (0%)

>gb|AAN30682.1|AE014469_4 (AE014469) branched-chain amino acid ABC transporter, periplasmic
           amino acid-binding protein, putative [Brucella suis
           1330]
          Length = 371

 Score =  383 bits (984), Expect = e-106
 Identities = 199/376 (52%), Positives = 262/376 (69%), Gaps = 10/376 (2%)






 
Structural Features:
COG0683, LivK, ABC-type branched-chain amino acid transport systems, 
periplasmic component 
[Amino acid transport and metabolism]
CD-Length = 366 residues,  97.8% aligned
Score =  281 bits (721), Expect = 7e-77
Identities = 142/358 (39%), Positives = 190/358 (53%), Gaps = 6/358 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:3437




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:20584




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35123




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:1717_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:1717
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3019
                           PA4913_tr
                           translation of PA4913
                           374
                           99.19
                           99.73
                           0
                           1910.0
     

     
     
93720
                           gb|AAG08298.1|AE004904_6
                           (AE004904) probable binding protein component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           374
                           99.19
                           99.73
                           0
                           1910.0
     

     
     
93721
                           gb|AAN70436.1|AE016685_1
                           (AE016792) branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas putida KT2440]
                           378
                           78.04
                           87.83
                           4
                           1550.0
     

     
     
93722
                           gb|AAO58347.1|
                           (AE016873) high affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           380
                           75.00
                           85.78
                           6
                           1490.0
     

     
     
93723
                           emb|CAC47059.1|
                           (AL591790) PUTATIVE LEUCINE-SPECIFIC BINDING PROTEIN PRECURSOR [Sinorhizobium meliloti]
                           380
                           53.15
                           68.15
                           14
                           1003.0
     

     






      

          
GC ORFID: 44719How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4913Glimmer Score: 

          
Start: 5048161Stop: 5047037

          
Length: 1125


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4913 translation of PA4913Homolog Bit Score 740.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7641 (ORF: BLASTX 577.0), psyr_15may02_Scaffold5_revised_gene6073 (ORF: BLASTX 299.0), t_PA1074 (ORF: BLASTX 293.0), t_PA4913 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCAAGAAGCTGTTCAGAAAAGGCATCCTGGCTCTCGCGGTTTCGTCCGTGATGGGTCTTTCCACGCAT 
GCGCTGGCCGACGTCGTGATCGGCGTGGCCGGACCGCATACCGGCGCCAACGCCTCCTTCGGCGAGCAATAC 
TGGCGCGGCGCGTCCCAGGCGGCGGAAGACATCAACGCGGCGGGTGGGATCAACGGCGAGAAGATCAAGCTG 
GTCAAGGCCGACGACGCCTGCGAACCGAAGCAGGCCGTGGCCGTGGCCAACCGCCTGGTGGACCAGGACAAG 
GCCATCGCCGTGGTCGGCCATTTCTGCTCTTCTTCGACCATCCCCGCATCCGAGGTCTACGACGAGGCCGGG 
ATCATCGCCATCACCCCCGGTTCCACCAACCCGCAGGTCACCGAGCGCGGACTCTCCGGGATGTTTCGCATG 
TGCGGCCGCGACGACCAGCAGGGCGTGGTCGCCGGCGACTATATCGTCAAGGTGCTGAAGGCCAAGAAGGTC 
GCGGTGATCCACGACAAGGACACCTATGGCCAGGGCCTGGCGGACGCCACCAGGGCGCAACTGAACAAGCTC 
GGCGTGAAAGAGGTTCTCTACGAGGGCCTGACCCGCGGCGAGAAGGACTTCAACGCGCTGGTTACCAAGATC 
CGCGCCTCCGGTGCCGAGGTCGTCTACTTCGGCGGCCTGCATCCGGAAGCCGGTCCGCTGGTACGGCAGATG 
CGTGAACAGGGACTGACCGCCAAGTTCATGTCCGACGACGGCGTGGTCACCGACGAACTGGCGACCACCGCC 
GGCGGTCCGCAGTACGTCAAGGGCGTGCTGATGACCTTCGGCGCCGACCCGCGGCTGATCCCCGACGGCAAG 
GCGGTGGTGGAGAAGTTCCGTGCCGGCGGTTTCGAGCCGGAAGGCTACACCCTCTACTCCTACGCCTCGATC 
CAGTCCCTGGCGGCGGCCTTCAACGGCGCCGGCGCCAACGATCCGGCCAAGGCCGCCGAGTGGCTGAAGTCG 
AATCCGGTGCAGACCGTGATGGGCAAGAAGGAATGGGACAAGAAGGGCGACCTGAAAGTCTCCGACTACGTG 
GTCTACGAGTGGGACGACAAGGGCAAGTACCACCAGTTGCCCTGA