ViewGene

Locus Name:
GeneID:
Location:

GeneID:1716
TrivialName: PA14_24370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24370
PAO1 Ortholog Locus:PA3076
Sequence Length:1080
Protein Length:359
Start: 2121786
Stop: 2120707
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06464.1|AE004731_12 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 357/359 (99%), Positives = 357/359 (99%)
Sequence:
ATGCGCTTCCGTACCCTGTACCTCGTCCTGTGCGGCCTGCTCCTGGGCCACGCCGCGACGGCCGCCGAACCG
CCGACCGCGCCCACGCCGCCGACGCAGCCGGCCGAAGGGCCGGGCGGCGCGGCCTATCGCCATGCCAGCGTG
CATCAGTGGCACTTCGGCGAAGGCGCTCGCGAATACTGGGTGTTCACCCCCGAGCAACCGGTCCCCGGCAAC
GCTCCGCTGGTGATCTTCCTGCACGGCTGGAGCGTGATGCAGCCGGACCTCTACCGCGCCTGGATCGACCAT
ATCGTCCGCCGCGGCATGGTGGTGGTCTACCCGCGCTACCAGCCGGACCTGAAGACGCCCAACGCAGACTTC
CTCGACAATGCCGCCGGCGCCCTCGGCGACGCCCTCAGGCGCCTGCAGGCCGGCGAGCTGGGGGTGCGCCCG
CGGCTGAACCAGGTCGCCTACCTCGGCCACTCCGCCGGCGGACTGCTCGCCGCCAACCTGGCGGCCGCCAGC
GAACGCCTGAAGCTGCCGGCGGCGAAGGCGCTGATGGTGGTCGAGCCCGGCAAGAGCCAGGGCAAGCGCTGG
GACGGCGTGGCCCAGGAACGCCTGTCGGGGCTGGCCAAGGGTACCCTGCTGCTGGCGGTCTGCGGCGACGAG
GACAGCCACGTGGCCTGCACCGACGCCAAGCGCATCTACCGCCAGAGCCGGCACATTCCGCCCAGCGACAAG
AACCTCCTGCTGCTGCGCAGCGATCGCCACGGCGCTCCGCCGCTGCTGGCCAACCACGCGGCGCCCACCGCG
CCGGTATTCGGCCCGCAGTATCCGAAGGAAGAAGACAGCGACTGGTTGCTCGACCGCGTCGAGAAGCGCCTC
GAAGTCCAGCAGGCCGAAGGCCGCTATACCGGCCACGACCCGCTGGTGATCGACGCCCTCGACTGGTACGGC
ACCTGGAAGCTGTTCGATGGCCTCACCGACGCGGCGTTCTACAACCGCAACCGCCAGTACGCCCTGGGCGCT
ACGCCGGAGCAGACCGGCATGGGCCAGTGGAGCGACGGCACCCCGGTGAAGCCAATCAAGGTGCTCAAGTAG
Translation:
MRFRTLYLVLCGLLLGHAATAAEPPTAPTPPTQPAEGPGGAAYRHASVHQWHFGEGAREYWVFTPEQPVPGN
APLVIFLHGWSVMQPDLYRAWIDHIVRRGMVVVYPRYQPDLKTPNADFLDNAAGALGDALRRLQAGELGVRP
RLNQVAYLGHSAGGLLAANLAAASERLKLPAAKALMVVEPGKSQGKRWDGVAQERLSGLAKGTLLLAVCGDE
DSHVACTDAKRIYRQSRHIPPSDKNLLLLRSDRHGAPPLLANHAAPTAPVFGPQYPKEEDSDWLLDRVEKRL
EVQQAEGRYTGHDPLVIDALDWYGTWKLFDGLTDAAFYNRNRQYALGATPEQTGMGQWSDGTPVKPIKVLK*
AnnotationID:1725GeneID:1716
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 15:03:37
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3076
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:3435
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:20582
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32438
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:1716_cdd.html
URL:
Homologs By Global Alignment
Gene ID:1716

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3018 PA3076_tr translation of PA3076 359 99.44 99.44 0 1911.0
93719 gb|AAG06464.1|AE004731_12 (AE004731) hypothetical protein PA3076 [Pseudomonas aeruginosa PAO1] 359 99.44 99.44 0 1911.0
GC ORFID: 44718How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3076Glimmer Score:
Start: 2832144Stop: 2833223
Length: 1080
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA3076 translation of PA3076Homolog Bit Score 740.0
Other Homologs: t_PA3076 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCTTCCGTACCCTGTACCTCGTCCTGTGCGGCCTGCTCCTGGGCCACGCCGCGACGGCCGCCGAACCG
CCGACCGCGCCCACGCCGCCGACGCAGCCGGCCGAAGGGCCGGGCGGCGCGGCCTATCGCCATGCCAGCGTG
CATCAGTGGCACTTCGGCGAAGGCGCTCGCGAATACTGGGTGTTCACCCCCGAGCAACCGGTCCCCGGCAAC
GCTCCGCTGGTGATCTTCCTGCACGGCTGGAGCGTGATGCAGCCGGACCTCTACCGCGCCTGGATCGACCAT
ATCGTCCGCCGCGGCATGGTGGTGGTCTACCCGCGCTACCAGCCGGACCTGAAGACGCCCAACGCAGACTTC
CTCGACAATGCCGCCGGCGCCCTCGGCGACGCCCTCAGGCGCCTGCAGGCCGGCGAGCTGGGGGTGCGCCCG
CGGCTGAACCAGGTCGCCTACCTCGGCCACTCCGCCGGCGGACTGCTCGCCGCCAACCTGGCGGCCGCCAGC
GAACGCCTGAAGCTGCCGGCGGCGAAGGCGCTGATGGTGGTCGAGCCCGGCAAGAGCCAGGGCAAGCGCTGG
GACGGCGTGGCCCAGGAACGCCTGTCGGGGCTGGCCAAGGGTACCCTGCTGCTGGCGGTCTGCGGCGACGAG
GACAGCCACGTGGCCTGCACCGACGCCAAGCGCATCTACCGCCAGAGCCGGCACATTCCGCCCAGCGACAAG
AACCTCCTGCTGCTGCGCAGCGATCGCCACGGCGCTCCGCCGCTGCTGGCCAACCACGCGGCGCCCACCGCG
CCGGTATTCGGCCCGCAGTATCCGAAGGAAGAAGACAGCGACTGGTTGCTCGACCGCGTCGAGAAGCGCCTC
GAAGTCCAGCAGGCCGAAGGCCGCTATACCGGCCACGACCCGCTGGTGATCGACGCCCTCGACTGGTACGGC
ACCTGGAAGCTGTTCGATGGCCTCACCGACGCGGCGTTCTACAACCGCAACCGCCAGTACGCCCTGGGCGCT
ACGCCGGAGCAGACCGGCATGGGCCAGTGGAGCGACGGCACCCCGGTGAAGCCAATCAAGGTGCTCAAGTAG