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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG05980.1|AE004688_2 (AE004688) probable periplasmic spermidine/putrescine-binding protein [Pseudomonas aeruginosa PAO1]
Identities = 367/367 (100%), Positives = 367/367 (100%)
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Sequence:
ATGAAAAAAGTTTGTGCACTGGCGTTATCGATCCTGACGACGATCGGTGCGACAGCGGCGGACAGTGCATGG
GCTGCGCAAACCAGCGTCCATCTTTACAACTGGTATGACTTCATCGCCCCGGAAACGCCCAAGGCTTTCCAG
AAGGAAACCGGCACCCGTGTCGTCCTCGACACCTTCGACAGCGCCGAGACCGCGCAGGGCAAACTGATGGTC
GGCCGCTCCGGCTACGACGTGGTGGTGATCACCTCCAACATCCTGCCCGGACTGATCAAGGCAGGCGTCCTC
CAGGAACTCGACCGCGATCGGCTCCCCCACTGGAAGAACCTCGACGCGGACATCCTCGGGAAGCTTCAGGCC
AACGATCCCGGCAATCGCTATGCCGTACCTTATCTCTGGGGAACCACCGGGATCGCCTACGACGTGGACAAG
GTCCGCAAGCTGCTCGGCCCCGACGCGCCGGTCGACTCCTGGGACCTGGTCTTCAAGGAGGAGAATATCTCC
CGCCTCAGCCAGTGCGGCGTGGCCACGCTGGACTCCTCCACCGAGCTGGTTTCCATCGCCCTCAACTACCTG
GGCCTGCCGCACAACAGCCAGAATCCCGAGGATTACCAGAAAGCCCAGGAACTGTTGCTGAAGGTTCGCCCC
TACATTCGCTATTTCGACTCCTCCAGAGTCGACACCGACCTCTCCAACGGCAACGTCTGCGTGGTGGTCGGC
TGGCAGGGCACGGCCTACATGGCCCAGGTCAACAACGAACAGGCCGGGAACGGTCGCCATATCGCCTACAGC
ATTCCCCGGGAAGGCTCGCTGGTCTGGGCCGAGAACATGGTGCTGCTCAAGGATGCACCGCATCCGCAGCAA
GGTTATGCGCTGATCGACTACCTGCTGCGTCCGGAGGTCATCGCCAGGACCTCCAACTACGTGGGCTATCCG
AATGGCAACCAGGCGGCGCTGCCGCTGGTGGAGCGGAAGCTGCGGGAAAACCCGGCGGTTTACCTGAGCAAG
GAAACCATGGCGACCCTCTTCCCGCTGGAAACCCTGCCACTGAAGGTCGAGAGAATCCGTACCCGGGTCTGG
AGCCGAGTCAAGACCGGGAGCTGA |
Translation:
MKKVCALALSILTTIGATAADSAWAAQTSVHLYNWYDFIAPETPKAFQKETGTRVVLDTFDSAETAQGKLMV
GRSGYDVVVITSNILPGLIKAGVLQELDRDRLPHWKNLDADILGKLQANDPGNRYAVPYLWGTTGIAYDVDK
VRKLLGPDAPVDSWDLVFKEENISRLSQCGVATLDSSTELVSIALNYLGLPHNSQNPEDYQKAQELLLKVRP
YIRYFDSSRVDTDLSNGNVCVVVGWQGTAYMAQVNNEQAGNGRHIAYSIPREGSLVWAENMVLLKDAPHPQQ
GYALIDYLLRPEVIARTSNYVGYPNGNQAALPLVERKLRENPAVYLSKETMATLFPLETLPLKVERIRTRVW
SRVKTGS* |
AnnotationID:1724 | GeneID:1715 |
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Modification Date/Time: |
2005-03-07 08:08:06 |
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GeneProduct: | putative periplasmic spermidine/putrescine-binding protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | putative ABC transporter, periplasmic polyamine-binding protein |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | amino acid biosynthesis and metabolims |
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Homology: | >gb|AAN69439.1|AE016579_10 (AE016788) ABC transporter, periplasmic polyamine-binding protein,
putative [Pseudomonas putida KT2440]
Length = 369
Score = 489 bits (1260), Expect = e-138
Identities = 231/360 (64%), Positives = 288/360 (80%)
>gb|AAC15511.1| (L49465) putative putrescine/spermidine binding protein
[Pseudomonas fluorescens]
Length = 377
Score = 392 bits (1007), Expect = e-108
Identities = 186/358 (51%), Positives = 258/358 (72%), Gaps = 5/358 (1%)
>gb|AAN54338.1|AE015571_1 (AE015571) polyamine ABC transporter, periplasmic polyamine-binding
protein [Shewanella oneidensis MR-1]
Length = 367
Score = 349 bits (895), Expect = 2e-95
Identities = 175/367 (47%), Positives = 247/367 (67%), Gaps = 2/367 (0%) |
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Structural Features: | COG0687, PotD, Spermidine/putrescine-binding periplasmic protein
[Amino acid transport and metabolism]
CD-Length = 363 residues, 98.6% aligned
Score = 333 bits (856), Expect = 2e-92
Identities = 147/367 (40%), Positives = 212/367 (57%), Gaps = 10/367 (2%) |
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GC ORFID: 44717 | How Found: BLASTX |
GC_TrimmedSeqID: 69 | Blast Result ID |
Subject Sequence Name: t_PA2592 | Glimmer Score: |
Start: 2306532 | Stop: 2307635 |
Length: 1104 | |
Start Codon: ATG | Truncated Start: |
Stop Codon: TGA | Truncated Stop: |
Homolog: t_PA2592 translation of PA2592 | Homolog Bit Score 740.0 |
Other Homologs: t_PA2711 (ORF: BLASTX 385.0), t_PA1410 (ORF: BLASTX 379.0), t_PA0301 (ORF: BLASTX 364.0), t_PA0300 (ORF: BLASTX 359.0), psyr_15may02_Scaffold6_revised_gene6511 (ORF: BLASTX 342.0), psyr_15may02_Scaffold6_revised_gene6512 (ORF: BLASTX 338.0), psyr_15may02_Scaffold7_revised_gene7441 (ORF: BLASTX 308.0), t_PA2592 (ORF: GLIMMER) |
GC ORF Sequence |
ATGAAAAAAGTTTGTGCACTGGCGTTATCGATCCTGACGACGATCGGTGCGACAGCGGCGGACAGTGCATGG GCTGCGCAAACCAGCGTCCATCTTTACAACTGGTATGACTTCATCGCCCCGGAAACGCCCAAGGCTTTCCAG AAGGAAACCGGCACCCGTGTCGTCCTCGACACCTTCGACAGCGCCGAGACCGCGCAGGGCAAACTGATGGTC GGCCGCTCCGGCTACGACGTGGTGGTGATCACCTCCAACATCCTGCCCGGACTGATCAAGGCAGGCGTCCTC CAGGAACTCGACCGCGATCGGCTCCCCCACTGGAAGAACCTCGACGCGGACATCCTCGGGAAGCTTCAGGCC AACGATCCCGGCAATCGCTATGCCGTACCTTATCTCTGGGGAACCACCGGGATCGCCTACGACGTGGACAAG GTCCGCAAGCTGCTCGGCCCCGACGCGCCGGTCGACTCCTGGGACCTGGTCTTCAAGGAGGAGAATATCTCC CGCCTCAGCCAGTGCGGCGTGGCCACGCTGGACTCCTCCACCGAGCTGGTTTCCATCGCCCTCAACTACCTG GGCCTGCCGCACAACAGCCAGAATCCCGAGGATTACCAGAAAGCCCAGGAACTGTTGCTGAAGGTTCGCCCC TACATTCGCTATTTCGACTCCTCCAGAGTCGACACCGACCTCTCCAACGGCAACGTCTGCGTGGTGGTCGGC TGGCAGGGCACGGCCTACATGGCCCAGGTCAACAACGAACAGGCCGGGAACGGTCGCCATATCGCCTACAGC ATTCCCCGGGAAGGCTCGCTGGTCTGGGCCGAGAACATGGTGCTGCTCAAGGATGCACCGCATCCGCAGCAA GGTTATGCGCTGATCGACTACCTGCTGCGTCCGGAGGTCATCGCCAGGACCTCCAACTACGTGGGCTATCCG AATGGCAACCAGGCGGCGCTGCCGCTGGTGGAGCGGAAGCTGCGGGAAAACCCGGCGGTTTACCTGAGCAAG GAAACCATGGCGACCCTCTTCCCGCTGGAAACCCTGCCACTGAAGGTCGAGAGAATCCGTACCCGGGTCTGG AGCCGAGTCAAGACCGGGAGCTGA |
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